Wall clock time and date at job start Mon Mar 30 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48504 * 109.47321 * 270.00529 * 3 2 1 5 5 H 1.48505 * 109.46770 * 30.00073 * 3 2 1 6 6 H 1.48493 * 109.47288 * 150.00226 * 3 2 1 7 7 C 1.38952 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47074 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99962 * 180.02562 * 13 12 10 15 15 C 1.52990 * 109.47024 * 205.00014 * 14 13 12 16 16 C 1.53005 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46795 * 60.00309 * 16 15 14 18 18 C 1.50700 * 109.47208 * 59.99892 * 17 16 15 19 19 N 1.34777 * 119.99675 * 180.27843 * 18 17 16 20 20 O 1.21283 * 119.99803 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.46876 * 300.00027 * 17 16 15 22 22 C 1.52996 * 109.46922 * 84.99821 * 14 13 12 23 23 H 0.96995 * 119.99935 * 359.97438 * 1 2 3 24 24 H 0.97003 * 120.00244 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.46818 * 60.00088 * 12 10 9 26 26 H 1.09000 * 109.47548 * 299.99813 * 12 10 9 27 27 H 1.00897 * 110.99645 * 303.95355 * 13 12 10 28 28 H 1.09005 * 109.46799 * 325.00132 * 14 13 12 29 29 H 1.09004 * 109.47351 * 60.00086 * 15 14 13 30 30 H 1.08996 * 109.47567 * 299.99977 * 15 14 13 31 31 H 1.08996 * 109.47069 * 300.00569 * 16 15 14 32 32 H 1.09000 * 109.47011 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46846 * 180.02562 * 17 16 15 34 34 H 0.97004 * 119.99652 * 179.72868 * 19 18 17 35 35 H 0.97000 * 119.99894 * 359.71837 * 19 18 17 36 36 H 1.09004 * 109.47239 * 180.02562 * 21 17 16 37 37 H 1.09005 * 109.47323 * 300.00275 * 21 17 16 38 38 H 1.09000 * 109.47764 * 299.99948 * 22 14 13 39 39 H 1.09005 * 109.47129 * 60.00513 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 -0.0007 14 6 1.4980 -7.2709 -0.0008 15 6 2.4044 -8.3426 0.6081 16 6 1.6747 -9.6875 0.6087 17 6 1.3201 -10.0757 -0.8282 18 6 2.5821 -10.1891 -1.6440 19 7 2.5133 -10.5175 -2.9494 20 8 3.6591 -9.9795 -1.1272 21 6 0.4137 -9.0040 -1.4371 22 6 1.1437 -7.6588 -1.4377 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3907 0.0002 25 1 0.6167 -4.9208 -0.8897 26 1 0.6174 -4.9206 0.8903 27 1 2.8326 -5.9125 -0.7825 28 1 0.5850 -7.1891 0.5891 29 1 2.6568 -8.0662 1.6319 30 1 3.3173 -8.4244 0.0183 31 1 0.7620 -9.6054 1.1987 32 1 2.3207 -10.4510 1.0421 33 1 0.7999 -11.0336 -0.8278 34 1 3.3254 -10.5866 -3.4754 35 1 1.6519 -10.6848 -3.3627 36 1 0.1606 -9.2808 -2.4606 37 1 -0.4991 -8.9219 -0.8470 38 1 0.4980 -6.8953 -1.8716 39 1 2.0567 -7.7406 -2.0276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038091988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:22 Heat of formation + Delta-G solvation = -92.565945 kcal Electronic energy + Delta-G solvation = -20738.919613 eV Core-core repulsion = 17487.350151 eV Total energy + Delta-G solvation = -3251.569462 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.61159 -38.37075 -37.39944 -34.57905 -33.95909 -33.62263 -31.18598 -30.69655 -29.65402 -26.20052 -24.16687 -22.98019 -22.66163 -20.94356 -19.66579 -19.10661 -17.85584 -17.37867 -16.66269 -16.25600 -15.72266 -15.13870 -14.70623 -14.51174 -14.18163 -14.10811 -13.87823 -13.66115 -13.12468 -12.85080 -12.57124 -12.29767 -12.00941 -11.96457 -11.52649 -11.48551 -11.19639 -11.01868 -10.83932 -10.43851 -10.36251 -10.31059 -10.16905 -9.91491 -9.58345 -9.46807 -8.37564 -7.94149 -7.87320 -6.37929 -3.78384 2.48867 3.20667 3.28872 3.32816 3.35620 3.96527 4.14602 4.35471 4.44460 4.54702 4.72467 4.88962 5.11357 5.16315 5.22886 5.26740 5.31122 5.42155 5.51681 5.63167 5.70688 5.78724 5.88963 5.91955 6.04434 6.07701 6.20799 6.33716 6.43334 6.50257 6.73088 7.10981 7.40631 7.59065 7.80040 8.10922 8.11425 8.66346 9.22374 9.59210 10.11391 10.80033 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.003331 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.030541 B = 8404.820829 C = 8499.498223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.566 5.566 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.051 3.949 13 N -0.663 5.663 14 C 0.090 3.910 15 C -0.121 4.121 16 C -0.097 4.097 17 C -0.110 4.110 18 C 0.521 3.479 19 N -0.860 5.860 20 O -0.531 6.531 21 C -0.104 4.104 22 C -0.156 4.156 23 H 0.271 0.729 24 H 0.392 0.608 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.349 0.651 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.399 0.601 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 -21.338 -4.974 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.227 3.773 11 O -0.466 6.466 12 C -0.082 4.082 13 N -0.293 5.293 14 C -0.021 4.021 15 C -0.158 4.158 16 C -0.136 4.136 17 C -0.132 4.132 18 C 0.307 3.693 19 N -0.424 5.424 20 O -0.407 6.407 21 C -0.143 4.143 22 C -0.195 4.195 23 H 0.081 0.919 24 H 0.225 0.775 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.168 0.832 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.230 0.770 35 H 0.227 0.773 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.082 -20.955 -3.761 21.512 hybrid contribution -0.814 0.722 -1.501 1.854 sum -3.896 -20.233 -5.262 21.266 Atomic orbital electron populations 1.69611 1.05926 1.28069 1.50901 1.25249 0.95630 0.99676 0.97434 0.85861 0.79281 0.80838 0.78334 1.20469 1.20946 1.19391 1.19715 0.93383 0.82289 1.47384 0.87957 1.41866 1.09151 1.04596 1.64636 1.19875 0.88422 0.84782 0.84267 1.90527 1.13805 1.87087 1.55138 1.21703 0.94471 0.91090 1.00916 1.60180 1.18341 0.99639 1.51185 1.21630 0.96768 0.89761 0.93937 1.21727 0.99877 0.91767 1.02461 1.21348 1.00603 0.98511 0.93114 1.21407 0.94197 1.00661 0.96885 1.20680 0.91389 0.74984 0.82287 1.43944 1.12600 1.74233 1.11575 1.90716 1.30695 1.48348 1.70926 1.21486 0.98126 0.94100 1.00586 1.22395 1.00686 0.96927 0.99474 0.91941 0.77507 0.94117 0.89719 0.83167 0.90832 0.91322 0.89128 0.91368 0.91292 0.88731 0.77030 0.77307 0.91801 0.90478 0.91587 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.94 13.05 55.50 0.72 -24.22 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 3 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 8 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 9 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 10 C 0.44 10.83 7.82 -10.99 -0.09 10.74 16 11 O -0.58 -16.49 15.78 5.55 0.09 -16.40 16 12 C 0.05 0.94 5.97 -4.97 -0.03 0.91 16 13 N -0.66 -11.59 5.87 -107.99 -0.63 -12.22 16 14 C 0.09 1.19 2.47 -67.72 -0.17 1.02 16 15 C -0.12 -1.60 5.23 -26.73 -0.14 -1.74 16 16 C -0.10 -0.97 5.09 -26.73 -0.14 -1.11 16 17 C -0.11 -0.90 3.01 -91.77 -0.28 -1.17 16 18 C 0.52 5.30 5.91 -10.98 -0.06 5.23 16 19 N -0.86 -5.56 8.76 31.22 0.27 -5.29 16 20 O -0.53 -7.79 14.49 5.55 0.08 -7.71 16 21 C -0.10 -0.80 5.35 -26.71 -0.14 -0.94 16 22 C -0.16 -1.72 4.95 -26.71 -0.13 -1.85 16 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 25 H 0.04 0.67 7.43 -51.93 -0.39 0.29 16 26 H 0.08 1.45 8.06 -51.93 -0.42 1.03 16 27 H 0.35 6.49 8.17 -39.29 -0.32 6.17 16 28 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.09 1.43 5.51 -51.93 -0.29 1.14 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.40 2.39 8.93 -40.82 -0.36 2.03 16 35 H 0.40 1.40 8.24 -40.82 -0.34 1.06 16 36 H 0.06 0.37 7.56 -51.93 -0.39 -0.03 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 39 H 0.06 0.78 7.21 -51.93 -0.37 0.41 16 LS Contribution 315.50 15.07 4.75 4.75 Total: -1.00 -34.45 315.50 -6.83 -41.28 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -5.62 Total: 15.27 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -1.42 Total: 2.91 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.31 Total: -56.51 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.12 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.45 -6.83 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.287 kcal (2) G-P(sol) polarization free energy of solvation -34.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds