Wall clock time and date at job start Mon Mar 30 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86800 * 120.00261 * 2 1 4 4 H 1.48504 * 109.47321 * 270.00529 * 3 2 1 5 5 H 1.48505 * 109.46770 * 30.00073 * 3 2 1 6 6 H 1.48493 * 109.47288 * 150.00226 * 3 2 1 7 7 C 1.38952 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00199 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99946 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00076 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99929 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00078 * 179.97438 * 10 9 7 13 13 N 1.46906 * 109.47074 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99962 * 180.02562 * 13 12 10 15 15 C 1.52990 * 109.47024 * 205.00014 * 14 13 12 16 16 C 1.53005 * 109.47213 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.46795 * 60.00309 * 16 15 14 18 18 C 1.50700 * 109.47208 * 59.99892 * 17 16 15 19 19 N 1.34777 * 119.99675 * 180.27843 * 18 17 16 20 20 O 1.21283 * 119.99803 * 359.97438 * 18 17 16 21 21 C 1.52998 * 109.46876 * 300.00027 * 17 16 15 22 22 C 1.52996 * 109.46922 * 84.99821 * 14 13 12 23 23 H 0.96995 * 119.99935 * 359.97438 * 1 2 3 24 24 H 0.97003 * 120.00244 * 359.97438 * 9 7 2 25 25 H 1.09005 * 109.46818 * 60.00088 * 12 10 9 26 26 H 1.09000 * 109.47548 * 299.99813 * 12 10 9 27 27 H 1.00897 * 110.99645 * 303.95355 * 13 12 10 28 28 H 1.09005 * 109.46799 * 325.00132 * 14 13 12 29 29 H 1.09004 * 109.47351 * 60.00086 * 15 14 13 30 30 H 1.08996 * 109.47567 * 299.99977 * 15 14 13 31 31 H 1.08996 * 109.47069 * 300.00569 * 16 15 14 32 32 H 1.09000 * 109.47011 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46846 * 180.02562 * 17 16 15 34 34 H 0.97004 * 119.99652 * 179.72868 * 19 18 17 35 35 H 0.97000 * 119.99894 * 359.71837 * 19 18 17 36 36 H 1.09004 * 109.47239 * 180.02562 * 21 17 16 37 37 H 1.09005 * 109.47323 * 300.00275 * 21 17 16 38 38 H 1.09000 * 109.47764 * 299.99948 * 22 14 13 39 39 H 1.09005 * 109.47129 * 60.00513 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0010 12 6 1.2437 -4.8630 0.0000 13 7 2.1983 -5.9796 -0.0007 14 6 1.4980 -7.2709 -0.0008 15 6 2.4044 -8.3426 0.6081 16 6 1.6747 -9.6875 0.6087 17 6 1.3201 -10.0757 -0.8282 18 6 2.5821 -10.1891 -1.6440 19 7 2.5133 -10.5175 -2.9494 20 8 3.6591 -9.9795 -1.1272 21 6 0.4137 -9.0040 -1.4371 22 6 1.1437 -7.6588 -1.4377 23 1 -0.4850 0.8400 0.0004 24 1 0.3533 -2.3907 0.0002 25 1 0.6167 -4.9208 -0.8897 26 1 0.6174 -4.9206 0.8903 27 1 2.8326 -5.9125 -0.7825 28 1 0.5850 -7.1891 0.5891 29 1 2.6568 -8.0662 1.6319 30 1 3.3173 -8.4244 0.0183 31 1 0.7620 -9.6054 1.1987 32 1 2.3207 -10.4510 1.0421 33 1 0.7999 -11.0336 -0.8278 34 1 3.3254 -10.5866 -3.4754 35 1 1.6519 -10.6848 -3.3627 36 1 0.1606 -9.2808 -2.4606 37 1 -0.4991 -8.9219 -0.8470 38 1 0.4980 -6.8953 -1.8716 39 1 2.0567 -7.7406 -2.0276 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038091988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:22 Heat of formation + Delta-G solvation = -121.996567 kcal Electronic energy + Delta-G solvation = -20740.195821 eV Core-core repulsion = 17487.350151 eV Total energy + Delta-G solvation = -3252.845670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42389 -40.16377 -38.54492 -36.11926 -35.41988 -34.60145 -33.27750 -31.50919 -30.79904 -27.85593 -25.82879 -23.90148 -23.53391 -21.94247 -21.14948 -20.29868 -19.89038 -18.17513 -17.76052 -17.39572 -16.85173 -16.56607 -16.34122 -16.05987 -15.57913 -15.30261 -15.08227 -14.68545 -14.47761 -14.17238 -13.74385 -13.54461 -13.20834 -13.16499 -13.02871 -12.84263 -12.75711 -12.43322 -12.12999 -12.00821 -11.77448 -11.52672 -11.31682 -11.19657 -10.64392 -10.41809 -10.33898 -10.02801 -9.22316 -8.47795 -5.96681 1.37147 1.40877 1.54029 1.75628 2.03673 2.28749 2.71552 2.94936 3.19153 3.50790 3.75012 3.81240 4.02616 4.05133 4.25788 4.34961 4.42157 4.47231 4.49246 4.60064 4.63080 4.65732 4.86526 4.97899 5.07965 5.14746 5.25591 5.31080 5.39771 5.44147 5.57762 5.92553 6.00245 6.20608 6.40076 6.56476 6.59628 7.11536 7.47127 7.54680 8.10896 8.69670 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.003331 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.030541 B = 8404.820829 C = 8499.498223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.275 1.275 7 C -0.337 4.337 8 H 0.076 0.924 9 N -0.571 5.571 10 C 0.435 3.565 11 O -0.627 6.627 12 C 0.068 3.932 13 N -0.684 5.684 14 C 0.090 3.910 15 C -0.118 4.118 16 C -0.095 4.095 17 C -0.104 4.104 18 C 0.513 3.487 19 N -0.843 5.843 20 O -0.587 6.587 21 C -0.098 4.098 22 C -0.151 4.151 23 H 0.278 0.722 24 H 0.397 0.603 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.337 0.663 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.133 0.867 34 H 0.402 0.598 35 H 0.416 0.584 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.067 0.933 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.938 -22.316 -5.693 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.200 1.200 7 C -0.466 4.466 8 H 0.094 0.906 9 N -0.209 5.209 10 C 0.222 3.778 11 O -0.513 6.513 12 C -0.064 4.064 13 N -0.314 5.314 14 C -0.019 4.019 15 C -0.157 4.157 16 C -0.133 4.133 17 C -0.125 4.125 18 C 0.299 3.701 19 N -0.406 5.406 20 O -0.468 6.468 21 C -0.136 4.136 22 C -0.190 4.190 23 H 0.088 0.912 24 H 0.231 0.769 25 H 0.085 0.915 26 H 0.122 0.878 27 H 0.155 0.845 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.232 0.768 35 H 0.248 0.752 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.619 -21.969 -4.517 23.122 hybrid contribution -0.028 0.988 -1.291 1.626 sum -5.647 -20.981 -5.808 22.491 Atomic orbital electron populations 1.69663 1.06768 1.29357 1.50184 1.26031 0.96577 1.02339 0.96158 0.84931 0.77853 0.76850 0.78710 1.19503 1.19302 1.19989 1.19666 0.92663 0.84148 1.50155 0.90591 1.41913 1.09313 1.04619 1.65010 1.20975 0.88266 0.86333 0.82203 1.90493 1.16119 1.88014 1.56708 1.21553 0.93981 0.87927 1.02959 1.60187 1.18949 1.01208 1.51073 1.21729 0.96692 0.87507 0.95964 1.21661 0.99422 0.94038 1.00534 1.21326 1.00900 0.95934 0.95120 1.21446 0.93415 1.02692 0.94992 1.21174 0.91407 0.74259 0.83249 1.43821 1.13801 1.72461 1.10537 1.90707 1.32783 1.51051 1.72217 1.21517 0.97928 0.91394 1.02754 1.22308 1.00319 0.99306 0.97103 0.91206 0.76873 0.91466 0.87773 0.84461 0.89312 0.93381 0.92093 0.89046 0.92098 0.84950 0.76757 0.75241 0.88974 0.88440 0.91456 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.04 13.05 21.66 0.28 -49.76 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.34 -19.70 9.68 84.04 0.81 -18.88 16 8 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 9 N -0.57 -30.24 5.29 -306.98 -1.62 -31.86 16 10 C 0.43 21.77 7.82 87.66 0.69 22.45 16 11 O -0.63 -36.95 15.78 -3.06 -0.05 -37.00 16 12 C 0.07 2.46 5.97 85.56 0.51 2.97 16 13 N -0.68 -24.13 5.87 -495.56 -2.91 -27.04 16 14 C 0.09 2.31 2.47 44.91 0.11 2.42 16 15 C -0.12 -3.18 5.23 30.59 0.16 -3.02 16 16 C -0.09 -1.72 5.09 30.60 0.16 -1.56 16 17 C -0.10 -1.37 3.01 -11.54 -0.03 -1.41 16 18 C 0.51 9.77 5.91 87.66 0.52 10.29 16 19 N -0.84 -9.22 8.76 -173.53 -1.52 -10.74 16 20 O -0.59 -17.73 14.49 -3.04 -0.04 -17.77 16 21 C -0.10 -1.10 5.35 30.61 0.16 -0.94 16 22 C -0.15 -3.04 4.95 30.61 0.15 -2.89 16 23 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 24 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 25 H 0.07 2.09 7.43 -2.38 -0.02 2.08 16 26 H 0.10 3.38 8.06 -2.39 -0.02 3.36 16 27 H 0.34 13.06 8.17 -89.70 -0.73 12.32 16 28 H 0.09 2.01 7.80 -2.38 -0.02 1.99 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 2.04 5.51 -2.39 -0.01 2.02 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 33 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.40 4.33 8.93 -92.71 -0.83 3.50 16 35 H 0.42 1.53 8.24 -92.71 -0.76 0.77 16 36 H 0.09 0.58 7.56 -2.38 -0.02 0.56 16 37 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 1.34 7.45 -2.39 -0.02 1.32 16 39 H 0.04 1.06 7.21 -2.38 -0.02 1.05 16 Total: -1.00 -78.26 315.50 -2.08 -80.34 By element: Atomic # 1 Polarization: 40.77 SS G_CDS: -1.95 Total: 38.82 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 3.70 Total: 9.28 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -5.77 Total: -119.40 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -0.09 Total: -54.77 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -78.26 -2.08 -80.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038091988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.661 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds