Wall clock time and date at job start Mon Mar 30 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47120 * 2 1 4 4 C 1.50707 * 109.46574 * 119.99332 * 2 1 3 5 5 H 1.08002 * 119.99237 * 120.00067 * 4 2 1 6 6 C 1.37875 * 120.00306 * 300.00031 * 4 2 1 7 7 N 1.31507 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46814 * 90.00352 * 8 6 4 10 10 H 1.48498 * 109.46948 * 209.99894 * 8 6 4 11 11 H 1.48499 * 109.47394 * 330.00208 * 8 6 4 12 12 N 1.46501 * 109.47311 * 239.99503 * 2 1 3 13 13 C 1.34775 * 120.00025 * 85.00222 * 12 2 1 14 14 O 1.21278 * 119.99656 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99943 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.47558 * 300.00426 * 15 13 12 17 17 C 1.53005 * 109.46808 * 60.00474 * 15 13 12 18 18 C 1.52996 * 109.46874 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47334 * 299.99770 * 18 17 15 20 20 C 1.53000 * 109.47274 * 60.00276 * 19 18 17 21 21 C 1.52996 * 109.46799 * 179.97438 * 15 13 12 22 22 H 1.09000 * 109.47764 * 300.00207 * 21 15 13 23 23 C 1.50696 * 109.47298 * 60.00791 * 21 15 13 24 24 O 1.20833 * 119.99655 * 359.97438 * 23 21 15 25 25 O 1.34222 * 120.00432 * 180.27351 * 23 21 15 26 26 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47070 * 300.00770 * 1 2 3 28 28 H 1.09007 * 109.46389 * 60.00491 * 1 2 3 29 29 H 0.97000 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99450 * 265.00526 * 12 2 1 31 31 H 1.09004 * 109.46966 * 299.99395 * 17 15 13 32 32 H 1.09000 * 109.47278 * 60.00085 * 17 15 13 33 33 H 1.09002 * 109.47587 * 60.00075 * 18 17 15 34 34 H 1.09005 * 109.47173 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.47262 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47439 * 299.99997 * 19 18 17 37 37 H 1.08990 * 109.47355 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47116 * 59.99522 * 20 19 18 39 39 H 0.96701 * 117.00458 * 179.72178 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3211 -1.1201 4.0081 9 1 3.6294 -0.5457 4.4126 10 1 1.3428 -0.9489 5.1121 11 1 2.4856 -2.5660 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8592 1.1584 -2.4115 15 6 2.6501 -0.7288 -3.5873 16 1 3.6494 -1.1207 -3.3977 17 6 1.7065 -1.8830 -3.9312 18 6 2.2167 -2.6039 -5.1806 19 6 2.2677 -1.6206 -6.3517 20 6 3.2113 -0.4664 -6.0078 21 6 2.7009 0.2540 -4.7587 22 1 1.7015 0.6455 -4.9483 23 6 3.6300 1.3912 -4.4204 24 8 4.1934 1.4135 -3.3517 25 8 3.8271 2.3824 -5.3037 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7080 1.1611 3.4843 30 1 2.2491 -1.6319 -1.1524 31 1 1.6699 -2.5834 -3.0968 32 1 0.7072 -1.4912 -4.1210 33 1 3.2161 -2.9957 -4.9914 34 1 1.5447 -3.4265 -5.4254 35 1 2.6317 -2.1341 -7.2417 36 1 1.2683 -1.2288 -6.5410 37 1 3.2473 0.2343 -6.8418 38 1 4.2107 -0.8582 -5.8185 39 1 4.4288 3.0922 -5.0402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:40 Heat of formation + Delta-G solvation = -157.234979 kcal Electronic energy + Delta-G solvation = -21645.105036 eV Core-core repulsion = 18358.438563 eV Total energy + Delta-G solvation = -3286.666473 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69549 -38.84174 -37.32795 -35.79890 -34.66280 -32.42258 -31.30148 -31.12571 -28.57493 -25.21696 -24.69238 -23.30386 -21.53686 -20.78620 -19.84265 -19.14999 -17.70459 -17.30152 -16.53196 -15.81585 -15.32381 -15.14062 -14.65389 -14.50017 -14.03850 -13.77633 -13.65771 -13.09360 -12.76854 -12.48529 -12.30833 -12.27428 -11.62079 -11.48190 -11.31708 -11.18929 -11.01982 -10.96660 -10.85782 -10.71981 -10.63299 -10.40053 -10.25544 -10.18205 -10.00763 -8.98833 -8.82876 -8.48307 -7.79336 -6.06775 -4.15427 2.58965 3.21623 3.28140 3.34263 3.36171 3.55680 4.08342 4.40428 4.45824 4.70538 4.75364 5.03889 5.11256 5.23625 5.25665 5.29245 5.33438 5.52320 5.54093 5.77223 5.82811 5.92782 5.94676 5.98280 6.02420 6.18556 6.29900 6.77702 6.88240 7.01715 7.21703 7.56465 7.63943 7.76123 7.99326 8.20413 8.21824 8.76975 8.85594 9.25040 9.52284 10.99371 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.005078 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.070837 B = 5512.916723 C = 6016.687692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.265 3.735 3 H 0.047 0.953 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.515 3.485 14 O -0.554 6.554 15 C -0.097 4.097 16 H 0.099 0.901 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.055 4.055 22 H 0.112 0.888 23 C 0.486 3.514 24 O -0.494 6.494 25 O -0.524 6.524 26 H 0.025 0.975 27 H 0.089 0.911 28 H 0.013 0.987 29 H 0.263 0.737 30 H 0.386 0.614 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 -5.598 -17.892 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.299 3.701 14 O -0.433 6.433 15 C -0.119 4.119 16 H 0.117 0.883 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.074 4.074 22 H 0.130 0.870 23 C 0.327 3.673 24 O -0.380 6.380 25 O -0.336 6.336 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.086 0.914 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.686 -4.943 -17.544 18.424 hybrid contribution 0.836 -0.315 1.217 1.510 sum 3.522 -5.258 -16.327 17.510 Atomic orbital electron populations 1.22065 0.98589 0.98954 1.00762 1.18700 0.90839 0.94022 0.80096 0.93506 1.21233 1.32189 1.13110 0.90406 0.92163 1.24887 0.94860 0.94988 0.99029 1.69908 1.35993 1.22568 1.23753 0.86454 0.78594 0.79824 0.82245 1.20595 1.21108 1.19868 1.46412 1.65280 1.13343 1.10465 1.20064 0.78139 0.87244 0.84621 1.90618 1.51522 1.16006 1.85144 1.21293 1.01854 0.95757 0.92965 0.88313 1.21540 0.98769 0.96016 0.98470 1.21584 1.01743 0.97895 0.94583 1.21558 0.99936 0.95998 0.98134 1.21555 0.99637 0.97733 0.95923 1.20751 0.99387 0.91129 0.96180 0.86957 1.23160 0.80324 0.82454 0.81398 1.90761 1.46928 1.76803 1.23477 1.84475 1.65292 1.34830 1.49016 0.95548 0.89260 0.96787 0.92665 0.78141 0.90507 0.91061 0.91604 0.91397 0.91423 0.91434 0.90384 0.91366 0.73681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.26 37.16 0.34 -3.36 16 2 C 0.27 7.05 2.56 -69.08 -0.18 6.87 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 4 C -0.53 -14.58 8.73 -34.44 -0.30 -14.88 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.65 11.32 55.43 0.63 -25.02 16 8 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.71 -15.42 4.96 -54.93 -0.27 -15.69 16 13 C 0.51 10.70 6.11 -10.99 -0.07 10.64 16 14 O -0.55 -13.75 13.82 -15.91 -0.22 -13.97 16 15 C -0.10 -1.44 1.71 -91.77 -0.16 -1.59 16 16 H 0.10 1.42 8.10 -51.93 -0.42 1.00 16 17 C -0.11 -1.27 5.10 -26.73 -0.14 -1.41 16 18 C -0.12 -1.04 5.92 -26.74 -0.16 -1.20 16 19 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 20 C -0.11 -1.07 5.14 -26.75 -0.14 -1.20 16 21 C -0.05 -0.75 1.81 -91.79 -0.17 -0.91 16 22 H 0.11 1.56 8.10 -51.93 -0.42 1.14 16 23 C 0.49 7.83 6.61 36.00 0.24 8.06 16 24 O -0.49 -10.12 14.92 -25.92 -0.39 -10.51 16 25 O -0.52 -6.65 13.33 -39.24 -0.52 -7.18 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.39 7.29 7.96 -40.82 -0.32 6.96 16 31 H 0.08 0.87 7.56 -51.93 -0.39 0.47 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.41 3.63 9.10 45.56 0.41 4.04 16 LS Contribution 317.15 15.07 4.78 4.78 Total: -1.00 -34.65 317.15 -7.18 -41.84 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.20 Total: 7.97 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -0.97 Total: 1.61 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.35 Total: -40.71 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.13 Total: -31.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.65 -7.18 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.397 kcal (2) G-P(sol) polarization free energy of solvation -34.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds