Wall clock time and date at job start Mon Mar 30 2020 04:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47120 * 2 1 4 4 C 1.50707 * 109.46574 * 119.99332 * 2 1 3 5 5 H 1.08002 * 119.99237 * 120.00067 * 4 2 1 6 6 C 1.37875 * 120.00306 * 300.00031 * 4 2 1 7 7 N 1.31507 * 119.99731 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99847 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46814 * 90.00352 * 8 6 4 10 10 H 1.48498 * 109.46948 * 209.99894 * 8 6 4 11 11 H 1.48499 * 109.47394 * 330.00208 * 8 6 4 12 12 N 1.46501 * 109.47311 * 239.99503 * 2 1 3 13 13 C 1.34775 * 120.00025 * 85.00222 * 12 2 1 14 14 O 1.21278 * 119.99656 * 0.02562 * 13 12 2 15 15 C 1.50696 * 119.99943 * 179.97438 * 13 12 2 16 16 H 1.08994 * 109.47558 * 300.00426 * 15 13 12 17 17 C 1.53005 * 109.46808 * 60.00474 * 15 13 12 18 18 C 1.52996 * 109.46874 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.47334 * 299.99770 * 18 17 15 20 20 C 1.53000 * 109.47274 * 60.00276 * 19 18 17 21 21 C 1.52996 * 109.46799 * 179.97438 * 15 13 12 22 22 H 1.09000 * 109.47764 * 300.00207 * 21 15 13 23 23 C 1.50696 * 109.47298 * 60.00791 * 21 15 13 24 24 O 1.20833 * 119.99655 * 359.97438 * 23 21 15 25 25 O 1.34222 * 120.00432 * 180.27351 * 23 21 15 26 26 H 1.08998 * 109.47120 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47070 * 300.00770 * 1 2 3 28 28 H 1.09007 * 109.46389 * 60.00491 * 1 2 3 29 29 H 0.97000 * 119.99661 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99450 * 265.00526 * 12 2 1 31 31 H 1.09004 * 109.46966 * 299.99395 * 17 15 13 32 32 H 1.09000 * 109.47278 * 60.00085 * 17 15 13 33 33 H 1.09002 * 109.47587 * 60.00075 * 18 17 15 34 34 H 1.09005 * 109.47173 * 179.97438 * 18 17 15 35 35 H 1.09006 * 109.47262 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47439 * 299.99997 * 19 18 17 37 37 H 1.08990 * 109.47355 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47116 * 59.99522 * 20 19 18 39 39 H 0.96701 * 117.00458 * 179.72178 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3211 -1.1201 4.0081 9 1 3.6294 -0.5457 4.4126 10 1 1.3428 -0.9489 5.1121 11 1 2.4856 -2.5660 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0185 -2.3571 14 8 1.8592 1.1584 -2.4115 15 6 2.6501 -0.7288 -3.5873 16 1 3.6494 -1.1207 -3.3977 17 6 1.7065 -1.8830 -3.9312 18 6 2.2167 -2.6039 -5.1806 19 6 2.2677 -1.6206 -6.3517 20 6 3.2113 -0.4664 -6.0078 21 6 2.7009 0.2540 -4.7587 22 1 1.7015 0.6455 -4.9483 23 6 3.6300 1.3912 -4.4204 24 8 4.1934 1.4135 -3.3517 25 8 3.8271 2.3824 -5.3037 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 0.7080 1.1611 3.4843 30 1 2.2491 -1.6319 -1.1524 31 1 1.6699 -2.5834 -3.0968 32 1 0.7072 -1.4912 -4.1210 33 1 3.2161 -2.9957 -4.9914 34 1 1.5447 -3.4265 -5.4254 35 1 2.6317 -2.1341 -7.2417 36 1 1.2683 -1.2288 -6.5410 37 1 3.2473 0.2343 -6.8418 38 1 4.2107 -0.8582 -5.8185 39 1 4.4288 3.0922 -5.0402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391786.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:40 Heat of formation + Delta-G solvation = -181.702253 kcal Electronic energy + Delta-G solvation = -21646.166017 eV Core-core repulsion = 18358.438563 eV Total energy + Delta-G solvation = -3287.727454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97004 -40.31223 -38.50742 -37.06886 -36.60676 -34.36228 -32.37106 -32.23748 -30.39328 -27.36184 -25.86960 -24.31547 -23.10750 -21.95984 -21.19000 -20.61997 -19.00155 -18.89853 -17.80658 -17.53823 -17.13293 -16.56171 -16.09913 -15.79563 -15.32000 -14.97842 -14.72308 -14.53878 -14.28822 -14.04184 -13.69490 -13.39594 -13.33002 -12.92187 -12.88072 -12.75121 -12.50380 -12.31747 -12.29958 -12.25905 -12.13090 -11.86084 -11.46182 -11.31590 -11.15062 -11.07755 -10.65193 -10.44492 -9.70753 -8.18907 -6.36810 1.33692 1.42564 1.44099 1.54791 1.90921 2.16667 2.34803 2.63090 3.11145 3.42418 3.72699 3.87098 4.12386 4.15990 4.31763 4.36511 4.44572 4.47202 4.60552 4.74408 4.88443 4.90347 4.97755 5.07340 5.09497 5.18807 5.24563 5.33372 5.38038 5.43594 5.56082 5.61585 5.67788 5.69475 5.91628 6.09757 6.71534 6.98866 7.05894 7.31395 7.61172 8.87681 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025610 B = 0.005078 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.070837 B = 5512.916723 C = 6016.687692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.272 3.728 3 H -0.013 1.013 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.257 1.257 12 N -0.706 5.706 13 C 0.506 3.494 14 O -0.600 6.600 15 C -0.085 4.085 16 H 0.106 0.894 17 C -0.107 4.107 18 C -0.115 4.115 19 C -0.116 4.116 20 C -0.102 4.102 21 C -0.056 4.056 22 H 0.108 0.892 23 C 0.483 3.517 24 O -0.548 6.548 25 O -0.512 6.512 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.011 0.989 29 H 0.265 0.735 30 H 0.402 0.598 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -8.169 -19.460 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.168 3.832 3 H 0.005 0.995 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.181 1.181 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.482 6.482 15 C -0.106 4.106 16 H 0.124 0.876 17 C -0.145 4.145 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.139 4.139 21 C -0.076 4.076 22 H 0.125 0.875 23 C 0.327 3.673 24 O -0.438 6.438 25 O -0.325 6.325 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.030 0.970 29 H 0.074 0.926 30 H 0.237 0.763 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 3.230 -7.538 -19.170 20.851 hybrid contribution 0.679 0.613 1.653 1.890 sum 3.910 -6.925 -17.517 19.238 Atomic orbital electron populations 1.21854 0.98024 0.99533 0.99379 1.18279 0.91232 0.91446 0.82202 0.99515 1.21558 1.32537 1.13529 0.90923 0.91003 1.25849 0.94839 0.95622 1.02449 1.70065 1.37040 1.24056 1.24591 0.85305 0.77690 0.79249 0.77844 1.20593 1.20664 1.18106 1.46193 1.65527 1.14016 1.09715 1.21178 0.76757 0.86909 0.85796 1.90585 1.53251 1.18310 1.86010 1.21288 1.02546 0.96584 0.90211 0.87620 1.21590 0.97662 0.94794 1.00434 1.21583 1.02586 0.98122 0.92894 1.21586 0.99718 0.95204 0.98800 1.21581 1.00234 0.98284 0.93844 1.20913 0.98696 0.90496 0.97495 0.87455 1.23777 0.79644 0.83151 0.80725 1.90742 1.49311 1.78093 1.25656 1.84439 1.65428 1.34748 1.47920 0.93748 0.91689 0.97035 0.92560 0.76265 0.90225 0.91607 0.90668 0.89413 0.88820 0.91222 0.89143 0.90680 0.71851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.27 15.00 2.56 44.25 0.11 15.11 16 3 H -0.01 -0.87 7.58 -2.39 -0.02 -0.89 16 4 C -0.55 -30.41 8.73 25.60 0.22 -30.18 16 5 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -54.74 11.32 21.45 0.24 -54.49 16 8 Si 0.97 43.35 29.54 68.60 2.03 45.38 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 11 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 12 N -0.71 -31.37 4.96 -446.09 -2.21 -33.59 16 13 C 0.51 21.58 6.11 87.66 0.54 22.12 16 14 O -0.60 -31.22 13.82 17.50 0.24 -30.97 16 15 C -0.08 -2.45 1.71 -11.54 -0.02 -2.47 16 16 H 0.11 2.93 8.10 -2.39 -0.02 2.91 16 17 C -0.11 -2.24 5.10 30.59 0.16 -2.08 16 18 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 19 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 20 C -0.10 -1.66 5.14 30.58 0.16 -1.50 16 21 C -0.06 -1.48 1.81 -11.55 -0.02 -1.50 16 22 H 0.11 2.93 8.10 -2.39 -0.02 2.91 16 23 C 0.48 15.62 6.61 71.23 0.47 16.09 16 24 O -0.55 -23.19 14.92 28.79 0.43 -22.77 16 25 O -0.51 -12.64 13.33 -51.34 -0.68 -13.33 16 26 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 3.74 6.07 -2.39 -0.01 3.73 16 28 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 30 H 0.40 15.06 7.96 -92.70 -0.74 14.32 16 31 H 0.08 1.62 7.56 -2.38 -0.02 1.60 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 7.35 9.10 -74.06 -0.67 6.67 16 Total: -1.00 -78.86 317.15 2.79 -76.08 By element: Atomic # 1 Polarization: 26.03 SS G_CDS: -0.35 Total: 25.68 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 3.09 Total: 8.01 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -1.97 Total: -88.08 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -0.01 Total: -67.07 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -78.86 2.79 -76.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391786.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.627 kcal (2) G-P(sol) polarization free energy of solvation -78.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds