Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.34780 * 120.00034 * 275.00683 * 12 2 1 14 14 O 1.21278 * 119.99851 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00157 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.46733 * 299.99799 * 15 13 12 17 17 C 1.53002 * 109.47108 * 59.99156 * 15 13 12 18 18 C 1.53002 * 109.46977 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47251 * 300.00487 * 18 17 15 20 20 C 1.52999 * 109.47102 * 60.00162 * 19 18 17 21 21 C 1.52997 * 109.47250 * 179.97438 * 15 13 12 22 22 H 1.08997 * 109.47264 * 299.99899 * 21 15 13 23 23 C 1.50704 * 109.47095 * 60.00049 * 21 15 13 24 24 O 1.20827 * 119.99671 * 359.97438 * 23 21 15 25 25 O 1.34224 * 119.99880 * 180.02562 * 23 21 15 26 26 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 27 27 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 28 28 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 31 31 H 1.08997 * 109.47726 * 300.00326 * 17 15 13 32 32 H 1.09007 * 109.46799 * 60.00683 * 17 15 13 33 33 H 1.08997 * 109.47034 * 60.00687 * 18 17 15 34 34 H 1.08998 * 109.46718 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.46921 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47264 * 300.00059 * 19 18 17 37 37 H 1.08996 * 109.47633 * 60.00019 * 20 19 18 38 38 H 1.09002 * 109.46929 * 180.02562 * 20 19 18 39 39 H 0.96695 * 117.00138 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 1.9760 -1.5507 3.8325 17 6 4.0514 -1.2798 3.3222 18 6 4.5606 -2.0017 4.5713 19 6 4.6120 -1.0191 5.7429 20 6 3.2096 -0.4682 6.0084 21 6 2.7010 0.2544 4.7588 22 1 3.3741 1.0760 4.5137 23 6 1.3198 0.7975 5.0205 24 8 0.3894 0.4356 4.3398 25 8 1.1234 1.6840 6.0090 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7046 1.1585 -3.4844 30 1 2.2492 -1.6317 1.1525 31 1 4.0147 -1.9802 2.4878 32 1 4.7243 -0.4579 3.0774 33 1 3.8877 -2.8236 4.8157 34 1 5.5599 -2.3939 4.3823 35 1 4.9744 -1.5336 6.6329 36 1 5.2850 -0.1972 5.4986 37 1 2.5366 -1.2900 6.2528 38 1 3.2463 0.2322 6.8428 39 1 0.2203 2.0042 6.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = -157.377809 kcal Electronic energy + Delta-G solvation = -21657.214666 eV Core-core repulsion = 18370.541999 eV Total energy + Delta-G solvation = -3286.672667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69807 -38.84412 -37.32239 -35.81092 -34.65897 -32.42397 -31.29422 -31.12425 -28.54243 -25.20530 -24.69363 -23.30588 -21.50959 -20.81211 -19.79390 -19.17536 -17.71819 -17.30579 -16.54012 -15.80787 -15.28443 -15.16907 -14.67911 -14.52037 -14.05267 -13.79010 -13.51296 -13.15405 -12.76497 -12.48259 -12.39502 -12.15892 -11.63826 -11.48212 -11.29825 -11.17971 -11.04678 -10.93720 -10.86449 -10.70915 -10.59574 -10.38905 -10.24228 -10.17337 -10.01672 -8.96313 -8.82854 -8.49443 -7.78677 -6.07449 -4.16555 2.57767 3.20812 3.25921 3.33338 3.36115 3.55799 4.08428 4.39313 4.46281 4.71295 4.76031 5.04564 5.12341 5.24107 5.24975 5.29682 5.34078 5.52740 5.54465 5.77635 5.83302 5.93593 5.95304 5.99287 6.03717 6.19860 6.31285 6.76164 6.93352 7.11568 7.26252 7.57379 7.65222 7.76575 7.99873 8.19168 8.22815 8.76851 8.85091 9.25008 9.51426 10.98467 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.005214 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.857651 B = 5368.591227 C = 6215.406251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.046 0.954 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.515 3.485 14 O -0.554 6.554 15 C -0.096 4.096 16 H 0.098 0.902 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.111 4.111 21 C -0.055 4.055 22 H 0.113 0.887 23 C 0.487 3.513 24 O -0.496 6.496 25 O -0.524 6.524 26 H 0.016 0.984 27 H 0.088 0.912 28 H 0.024 0.976 29 H 0.263 0.737 30 H 0.386 0.614 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.077 0.923 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 -4.804 17.125 18.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.299 3.701 14 O -0.433 6.433 15 C -0.118 4.118 16 H 0.116 0.884 17 C -0.149 4.149 18 C -0.158 4.158 19 C -0.156 4.156 20 C -0.148 4.148 21 C -0.075 4.075 22 H 0.131 0.869 23 C 0.328 3.672 24 O -0.381 6.381 25 O -0.336 6.336 26 H 0.035 0.965 27 H 0.106 0.894 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.990 -4.087 16.716 18.221 hybrid contribution -0.367 -0.621 -0.918 1.168 sum 5.623 -4.709 15.798 17.418 Atomic orbital electron populations 1.22053 0.98537 0.99015 1.00846 1.18697 0.91027 0.93825 0.80024 0.93596 1.21273 1.32196 1.13091 0.90386 0.92096 1.24902 0.94866 0.94993 0.99051 1.69930 1.35798 1.22751 1.23644 0.86403 0.78565 0.79508 0.82653 1.19758 1.20916 1.20926 1.46419 1.65257 1.13337 1.10508 1.20069 0.78211 0.87392 0.84407 1.90618 1.51343 1.16413 1.84926 1.21293 0.98802 0.98433 0.93285 0.88392 1.21547 0.94234 1.00688 0.98386 1.21585 1.01466 0.98120 0.94624 1.21559 0.96256 0.99311 0.98519 1.21569 0.97320 1.00087 0.95836 1.20777 0.91560 0.99024 0.96132 0.86910 1.23164 0.91930 0.75932 0.76211 1.90746 1.44421 1.57248 1.45695 1.84480 1.38395 1.57915 1.52788 0.96466 0.89367 0.95660 0.92713 0.78139 0.90443 0.90977 0.91642 0.91383 0.91434 0.91411 0.91389 0.90400 0.73707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.26 37.16 0.34 -3.54 16 2 C 0.27 7.06 2.56 -69.08 -0.18 6.89 16 3 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.06 1.78 5.31 -17.82 -0.09 1.69 16 7 N -0.88 -25.55 11.31 55.43 0.63 -24.92 16 8 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.71 -15.41 4.96 -54.93 -0.27 -15.68 16 13 C 0.51 10.69 6.11 -10.98 -0.07 10.62 16 14 O -0.55 -13.73 13.82 -15.90 -0.22 -13.95 16 15 C -0.10 -1.43 1.71 -91.77 -0.16 -1.58 16 16 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 17 C -0.11 -1.30 5.10 -26.73 -0.14 -1.44 16 18 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 19 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 20 C -0.11 -1.06 5.14 -26.70 -0.14 -1.20 16 21 C -0.06 -0.75 1.81 -91.74 -0.17 -0.92 16 22 H 0.11 1.58 8.10 -51.93 -0.42 1.16 16 23 C 0.49 7.75 6.62 36.01 0.24 7.99 16 24 O -0.50 -9.95 14.92 -25.91 -0.39 -10.34 16 25 O -0.52 -6.57 13.33 -39.24 -0.52 -7.09 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.52 6.06 -51.93 -0.31 2.20 16 28 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 30 H 0.39 7.29 7.96 -40.82 -0.32 6.96 16 31 H 0.08 0.90 7.56 -51.93 -0.39 0.51 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.40 3.55 9.10 45.56 0.41 3.96 16 LS Contribution 317.14 15.07 4.78 4.78 Total: -1.00 -34.44 317.14 -7.18 -41.62 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.20 Total: 8.20 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.97 Total: 1.46 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.35 Total: -40.60 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -1.13 Total: -31.38 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.44 -7.18 -41.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.755 kcal (2) G-P(sol) polarization free energy of solvation -34.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds