Wall clock time and date at job start Mon Mar 30 2020 04:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46592 * 2 1 4 4 C 1.50700 * 109.47318 * 240.00437 * 2 1 3 5 5 H 1.07999 * 119.99988 * 239.99541 * 4 2 1 6 6 C 1.37885 * 120.00047 * 59.99721 * 4 2 1 7 7 N 1.31518 * 119.99792 * 359.72305 * 6 4 2 8 8 Si 1.86795 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47021 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47081 * 119.99727 * 8 6 4 11 11 H 1.48501 * 109.47213 * 240.00099 * 8 6 4 12 12 N 1.46497 * 109.47495 * 120.00082 * 2 1 3 13 13 C 1.34780 * 120.00034 * 275.00683 * 12 2 1 14 14 O 1.21278 * 119.99851 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00157 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.46733 * 299.99799 * 15 13 12 17 17 C 1.53002 * 109.47108 * 59.99156 * 15 13 12 18 18 C 1.53002 * 109.46977 * 180.02562 * 17 15 13 19 19 C 1.52997 * 109.47251 * 300.00487 * 18 17 15 20 20 C 1.52999 * 109.47102 * 60.00162 * 19 18 17 21 21 C 1.52997 * 109.47250 * 179.97438 * 15 13 12 22 22 H 1.08997 * 109.47264 * 299.99899 * 21 15 13 23 23 C 1.50704 * 109.47095 * 60.00049 * 21 15 13 24 24 O 1.20827 * 119.99671 * 359.97438 * 23 21 15 25 25 O 1.34224 * 119.99880 * 180.02562 * 23 21 15 26 26 H 1.08996 * 109.46948 * 299.99657 * 1 2 3 27 27 H 1.08996 * 109.46989 * 60.00145 * 1 2 3 28 28 H 1.09002 * 109.46768 * 179.97438 * 1 2 3 29 29 H 0.97000 * 119.99468 * 179.97438 * 7 6 4 30 30 H 0.97000 * 120.00091 * 95.00023 * 12 2 1 31 31 H 1.08997 * 109.47726 * 300.00326 * 17 15 13 32 32 H 1.09007 * 109.46799 * 60.00683 * 17 15 13 33 33 H 1.08997 * 109.47034 * 60.00687 * 18 17 15 34 34 H 1.08998 * 109.46718 * 180.02562 * 18 17 15 35 35 H 1.08998 * 109.46921 * 179.97438 * 19 18 17 36 36 H 1.08997 * 109.47264 * 300.00059 * 19 18 17 37 37 H 1.08996 * 109.47633 * 60.00019 * 20 19 18 38 38 H 1.09002 * 109.46929 * 180.02562 * 20 19 18 39 39 H 0.96695 * 117.00138 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6534 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9386 0.8269 -2.6034 8 14 2.3214 -1.1200 -4.0080 9 1 3.1466 -2.2867 -3.6039 10 1 1.1661 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8589 1.1585 2.4115 15 6 2.6489 -0.7288 3.5877 16 1 1.9760 -1.5507 3.8325 17 6 4.0514 -1.2798 3.3222 18 6 4.5606 -2.0017 4.5713 19 6 4.6120 -1.0191 5.7429 20 6 3.2096 -0.4682 6.0084 21 6 2.7010 0.2544 4.7588 22 1 3.3741 1.0760 4.5137 23 6 1.3198 0.7975 5.0205 24 8 0.3894 0.4356 4.3398 25 8 1.1234 1.6840 6.0090 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7046 1.1585 -3.4844 30 1 2.2492 -1.6317 1.1525 31 1 4.0147 -1.9802 2.4878 32 1 4.7243 -0.4579 3.0774 33 1 3.8877 -2.8236 4.8157 34 1 5.5599 -2.3939 4.3823 35 1 4.9744 -1.5336 6.6329 36 1 5.2850 -0.1972 5.4986 37 1 2.5366 -1.2900 6.2528 38 1 3.2463 0.2322 6.8428 39 1 0.2203 2.0042 6.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391788.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:42 Heat of formation + Delta-G solvation = -181.542999 kcal Electronic energy + Delta-G solvation = -21658.262547 eV Core-core repulsion = 18370.541999 eV Total energy + Delta-G solvation = -3287.720548 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.96467 -40.30781 -38.50716 -37.06031 -36.60851 -34.35639 -32.37764 -32.23490 -30.38693 -27.37079 -25.87119 -24.33440 -23.07477 -21.98825 -21.17133 -20.62818 -19.00708 -18.89566 -17.80093 -17.50065 -17.14818 -16.53883 -16.15465 -15.78167 -15.24494 -14.99653 -14.66170 -14.55459 -14.45435 -13.94658 -13.69978 -13.41261 -13.32067 -12.95583 -12.87319 -12.72363 -12.49165 -12.33606 -12.31175 -12.26699 -12.10154 -11.86182 -11.46334 -11.30929 -11.13829 -11.07312 -10.65205 -10.45288 -9.70941 -8.18067 -6.36237 1.34257 1.44341 1.44423 1.57492 1.91021 2.16911 2.35208 2.63440 3.12069 3.42546 3.72743 3.87155 4.12482 4.16191 4.31726 4.36014 4.44403 4.47242 4.60695 4.71360 4.87931 4.90156 4.97512 5.08127 5.09269 5.18805 5.24375 5.33182 5.38032 5.42135 5.55920 5.61511 5.67358 5.68505 5.90046 6.08554 6.72561 6.98886 7.06410 7.32137 7.61117 8.88835 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025875 B = 0.005214 C = 0.004504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.857651 B = 5368.591227 C = 6215.406251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.274 3.726 3 H -0.005 1.005 4 C -0.543 4.543 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.977 3.023 9 H -0.257 1.257 10 H -0.280 1.280 11 H -0.283 1.283 12 N -0.706 5.706 13 C 0.506 3.494 14 O -0.600 6.600 15 C -0.084 4.084 16 H 0.108 0.892 17 C -0.108 4.108 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.101 4.101 21 C -0.057 4.057 22 H 0.106 0.894 23 C 0.484 3.516 24 O -0.547 6.547 25 O -0.512 6.512 26 H 0.002 0.998 27 H 0.066 0.934 28 H 0.037 0.963 29 H 0.265 0.735 30 H 0.403 0.597 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.030 -7.093 18.344 21.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.012 0.988 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.189 4.189 7 N -0.559 5.559 8 Si 0.801 3.199 9 H -0.180 1.180 10 H -0.205 1.205 11 H -0.209 1.209 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.481 6.481 15 C -0.105 4.105 16 H 0.126 0.874 17 C -0.146 4.146 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.139 4.139 21 C -0.077 4.077 22 H 0.124 0.876 23 C 0.328 3.672 24 O -0.436 6.436 25 O -0.326 6.326 26 H 0.021 0.979 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.238 0.762 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 7.883 -6.397 17.990 20.657 hybrid contribution -0.999 0.205 -1.234 1.601 sum 6.884 -6.192 16.756 19.144 Atomic orbital electron populations 1.21873 0.98983 0.99072 0.98995 1.18272 0.90620 0.91823 0.82303 0.98755 1.21575 1.32444 1.13503 0.90634 0.90612 1.25883 0.94843 0.95604 1.02552 1.70085 1.36962 1.24353 1.24531 0.85224 0.78045 0.78534 0.78071 1.18048 1.20544 1.20860 1.46194 1.65464 1.14023 1.09791 1.21187 0.76834 0.87077 0.85545 1.90585 1.53003 1.18783 1.85777 1.21285 1.00630 0.98288 0.90344 0.87381 1.21592 0.91864 1.00645 1.00481 1.21581 1.02534 0.98104 0.92917 1.21587 0.95050 0.99376 0.99338 1.21593 0.98348 1.00199 0.93742 1.20930 0.90182 0.98952 0.97623 0.87628 1.23730 0.92341 0.75482 0.75669 1.90727 1.46144 1.59178 1.47571 1.84442 1.39865 1.56840 1.51406 0.97901 0.91510 0.94422 0.92593 0.76248 0.90293 0.91846 0.90520 0.89532 0.88784 0.91357 0.90540 0.89157 0.71838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.24 9.26 71.98 0.67 -6.57 16 2 C 0.27 15.06 2.56 44.25 0.11 15.17 16 3 H -0.01 -0.35 7.58 -2.38 -0.02 -0.37 16 4 C -0.54 -29.65 8.73 25.60 0.22 -29.42 16 5 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 6 C 0.01 0.59 5.31 84.66 0.45 1.04 16 7 N -0.92 -54.60 11.31 21.45 0.24 -54.36 16 8 Si 0.98 42.70 29.54 68.60 2.03 44.73 16 9 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 N -0.71 -31.34 4.96 -446.09 -2.21 -33.55 16 13 C 0.51 21.56 6.11 87.66 0.54 22.09 16 14 O -0.60 -31.19 13.82 17.49 0.24 -30.95 16 15 C -0.08 -2.42 1.71 -11.54 -0.02 -2.44 16 16 H 0.11 2.93 8.10 -2.38 -0.02 2.91 16 17 C -0.11 -2.33 5.10 30.60 0.16 -2.17 16 18 C -0.11 -1.56 5.92 30.59 0.18 -1.38 16 19 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 20 C -0.10 -1.65 5.14 30.61 0.16 -1.49 16 21 C -0.06 -1.50 1.81 -11.52 -0.02 -1.52 16 22 H 0.11 2.93 8.10 -2.39 -0.02 2.91 16 23 C 0.48 15.40 6.62 71.24 0.47 15.87 16 24 O -0.55 -22.53 14.92 28.81 0.43 -22.10 16 25 O -0.51 -12.45 13.33 -51.36 -0.68 -13.13 16 26 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 27 H 0.07 3.98 6.06 -2.39 -0.01 3.96 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 30 H 0.40 15.02 7.96 -92.71 -0.74 14.29 16 31 H 0.08 1.67 7.56 -2.39 -0.02 1.65 16 32 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.28 8.11 -2.39 -0.02 1.27 16 39 H 0.42 7.12 9.10 -74.06 -0.67 6.45 16 Total: -1.00 -77.98 317.14 2.79 -75.19 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.35 Total: 26.24 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 3.09 Total: 7.93 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -1.97 Total: -87.91 kcal Atomic # 8 Polarization: -66.17 SS G_CDS: -0.01 Total: -66.18 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -77.98 2.79 -75.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391788.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.352 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds