Wall clock time and date at job start Mon Mar 30 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47239 * 2 1 4 4 C 1.50701 * 109.47191 * 119.99679 * 2 1 3 5 5 H 1.07998 * 119.99749 * 114.85486 * 4 2 1 6 6 C 1.37871 * 120.00103 * 294.85523 * 4 2 1 7 7 N 1.31510 * 120.00262 * 0.17346 * 6 4 2 8 8 Si 1.86807 * 119.99910 * 180.45415 * 6 4 2 9 9 H 1.48503 * 109.46737 * 264.73143 * 8 6 4 10 10 H 1.48495 * 109.47173 * 24.72725 * 8 6 4 11 11 H 1.48499 * 109.47060 * 144.73284 * 8 6 4 12 12 N 1.46493 * 109.46988 * 240.00049 * 2 1 3 13 13 C 1.34782 * 120.00271 * 85.00354 * 12 2 1 14 14 O 1.21284 * 119.99763 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00172 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46973 * 183.39481 * 15 13 12 17 17 C 1.50695 * 110.01795 * 298.99934 * 16 15 13 18 18 O 1.20829 * 119.99867 * 125.77303 * 17 16 15 19 19 O 1.34232 * 120.00506 * 305.76969 * 17 16 15 20 20 C 1.54269 * 110.02981 * 177.61299 * 16 15 13 21 21 C 1.54968 * 104.15703 * 217.13796 * 20 16 15 22 22 C 1.54894 * 102.77830 * 37.88885 * 21 20 16 23 23 C 1.53874 * 110.03050 * 60.39535 * 16 15 13 24 24 H 1.09006 * 109.46720 * 296.91949 * 1 2 3 25 25 H 1.09003 * 109.47520 * 56.91814 * 1 2 3 26 26 H 1.09001 * 109.46963 * 176.92411 * 1 2 3 27 27 H 0.96999 * 120.00457 * 180.27371 * 7 6 4 28 28 H 0.97001 * 120.00451 * 264.99316 * 12 2 1 29 29 H 1.08998 * 109.46997 * 303.39639 * 15 13 12 30 30 H 1.09004 * 109.47080 * 63.39449 * 15 13 12 31 31 H 0.96701 * 117.00160 * 179.97438 * 19 17 16 32 32 H 1.09001 * 110.48608 * 335.77851 * 20 16 15 33 33 H 1.08997 * 110.48971 * 98.43034 * 20 16 15 34 34 H 1.08995 * 110.71947 * 279.57187 * 21 20 16 35 35 H 1.09004 * 110.76230 * 156.22227 * 21 20 16 36 36 H 1.09002 * 110.48521 * 203.40945 * 22 21 20 37 37 H 1.08996 * 110.48672 * 80.76115 * 22 21 20 38 38 H 1.09001 * 110.02800 * 238.56656 * 23 16 15 39 39 H 1.08994 * 110.03089 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5830 -1.6343 1.1336 6 6 1.7890 -0.1806 2.4799 7 7 1.1155 0.9427 2.5981 8 14 2.4227 -1.0546 4.0045 9 1 1.3519 -1.9212 4.5593 10 1 3.5975 -1.8885 3.6447 11 1 2.8221 -0.0489 5.0215 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6499 -0.7285 -3.5874 16 6 2.7817 0.2732 -4.7365 17 6 1.4372 0.8761 -5.0520 18 8 1.3008 2.0767 -5.0618 19 8 0.3911 0.0797 -5.3222 20 6 3.3525 -0.4285 -5.9862 21 6 4.2830 0.6334 -6.6252 22 6 4.9248 1.3140 -5.3907 23 6 3.7806 1.3808 -4.3581 24 1 -0.3633 0.4653 0.9164 25 1 -0.3634 0.5609 -0.8611 26 1 -0.3633 -1.0262 -0.0551 27 1 0.9477 1.3175 3.4769 28 1 2.2491 -1.6317 -1.1526 29 1 3.6234 -1.1720 -3.3785 30 1 1.9461 -1.5123 -3.8676 31 1 -0.4511 0.5125 -5.5184 32 1 3.9227 -1.3124 -5.7004 33 1 2.5500 -0.6965 -6.6732 34 1 3.7056 1.3524 -7.2062 35 1 5.0444 0.1579 -7.2436 36 1 5.2691 2.3167 -5.6439 37 1 5.7489 0.7117 -5.0085 38 1 3.2930 2.3546 -4.4035 39 1 4.1710 1.2050 -3.3558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:23 Heat of formation + Delta-G solvation = -151.124180 kcal Electronic energy + Delta-G solvation = -21596.758313 eV Core-core repulsion = 18310.356824 eV Total energy + Delta-G solvation = -3286.401489 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.80991 -38.74549 -37.45187 -35.76916 -34.76434 -32.40904 -31.68516 -29.06899 -28.73792 -26.01342 -25.21342 -23.33745 -21.31897 -20.87841 -19.50613 -19.08042 -17.60335 -17.12348 -16.51175 -16.05163 -15.28397 -15.19784 -14.94475 -14.59775 -14.26680 -13.87657 -13.30484 -13.00280 -12.85015 -12.45022 -12.10116 -11.71756 -11.49715 -11.39833 -11.20992 -11.13533 -11.11082 -10.99714 -10.93744 -10.80106 -10.74154 -10.45376 -10.33282 -10.26598 -10.01087 -9.04032 -8.96598 -8.57083 -7.89499 -6.12783 -4.21559 2.56148 3.21071 3.23944 3.31051 3.33217 3.40037 4.00667 4.34328 4.47690 4.52771 4.76073 5.10714 5.19432 5.20940 5.35676 5.44073 5.47212 5.56800 5.69964 5.74218 5.76861 5.80674 5.90649 6.10559 6.15204 6.35416 6.55030 6.79422 6.80063 6.94175 7.14165 7.45937 7.54668 7.68834 7.88681 8.10902 8.19346 8.66799 8.78807 9.13178 9.46025 10.94487 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.004686 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.849242 B = 5973.585355 C = 6323.804331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.285 1.285 12 N -0.708 5.708 13 C 0.493 3.507 14 O -0.544 6.544 15 C -0.135 4.135 16 C -0.030 4.030 17 C 0.497 3.503 18 O -0.499 6.499 19 O -0.522 6.522 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.108 4.108 24 H 0.081 0.919 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.405 0.595 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.480 -5.329 -16.591 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.070 0.930 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.210 1.210 12 N -0.356 5.356 13 C 0.277 3.723 14 O -0.422 6.422 15 C -0.175 4.175 16 C -0.032 4.032 17 C 0.339 3.661 18 O -0.385 6.385 19 O -0.334 6.334 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.163 4.163 23 C -0.146 4.146 24 H 0.100 0.900 25 H 0.034 0.966 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.263 0.737 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.533 -4.183 -16.352 17.477 hybrid contribution -0.298 -0.680 0.940 1.198 sum 4.235 -4.862 -15.412 16.706 Atomic orbital electron populations 1.22028 0.98769 0.98512 1.00822 1.18733 0.90747 0.94240 0.80064 0.93050 1.21209 1.36428 1.09069 0.90501 0.92109 1.24901 0.94875 0.94893 0.99065 1.69939 1.39219 1.18821 1.24055 0.86449 0.79070 0.79249 0.82417 1.20623 1.19817 1.21049 1.46509 1.65079 1.13468 1.10565 1.20427 0.79151 0.87795 0.84939 1.90747 1.50934 1.15681 1.84870 1.21920 1.04031 0.98634 0.92916 1.20825 0.89634 0.96674 0.96029 1.22956 0.86049 0.85258 0.71867 1.90644 1.84278 1.16594 1.46989 1.84476 1.21827 1.44704 1.82359 1.22507 0.99305 0.98469 0.94739 1.22550 0.98518 0.97721 0.97620 1.22421 0.97875 1.00763 0.95260 1.22266 0.93924 0.99290 0.99095 0.89989 0.96581 0.95505 0.92582 0.77985 0.88066 0.88267 0.73665 0.89786 0.90749 0.91514 0.91133 0.91411 0.91490 0.88801 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.34 37.16 0.35 -3.23 16 2 C 0.26 6.75 2.47 -69.09 -0.17 6.58 16 3 H 0.05 1.53 7.58 -51.93 -0.39 1.14 16 4 C -0.53 -14.14 8.68 -34.44 -0.30 -14.44 16 5 H 0.06 1.53 7.72 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.31 -17.82 -0.09 1.69 16 7 N -0.88 -25.22 11.69 55.43 0.65 -24.57 16 8 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.71 -14.56 5.07 -54.93 -0.28 -14.83 16 13 C 0.49 9.59 6.89 -10.99 -0.08 9.51 16 14 O -0.54 -12.85 13.10 -0.78 -0.01 -12.86 16 15 C -0.13 -1.84 4.42 -27.89 -0.12 -1.97 16 16 C -0.03 -0.41 0.59 -154.54 -0.09 -0.50 16 17 C 0.50 7.99 5.19 36.00 0.19 8.17 16 18 O -0.50 -9.72 15.72 -22.20 -0.35 -10.07 16 19 O -0.52 -6.85 13.10 -39.26 -0.51 -7.36 16 20 C -0.11 -1.12 5.90 -25.03 -0.15 -1.27 16 21 C -0.13 -1.21 6.91 -24.69 -0.17 -1.38 16 22 C -0.13 -1.37 6.83 -25.07 -0.17 -1.55 16 23 C -0.11 -1.60 4.76 -25.61 -0.12 -1.72 16 24 H 0.08 2.23 6.42 -51.93 -0.33 1.90 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.39 6.80 8.53 -40.82 -0.35 6.45 16 29 H 0.10 1.12 8.12 -51.93 -0.42 0.70 16 30 H 0.10 1.19 8.02 -51.93 -0.42 0.77 16 31 H 0.41 3.83 9.10 45.56 0.41 4.24 16 32 H 0.08 0.68 7.84 -51.93 -0.41 0.27 16 33 H 0.07 0.70 7.77 -51.93 -0.40 0.30 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.09 1.67 6.41 -51.93 -0.33 1.34 16 39 H 0.08 1.22 6.99 -51.93 -0.36 0.85 16 LS Contribution 318.48 15.07 4.80 4.80 Total: -1.00 -33.54 318.48 -6.74 -40.28 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.08 Total: 9.09 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -0.93 Total: -0.11 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.37 Total: -39.41 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.87 Total: -30.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.54 -6.74 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.846 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds