Wall clock time and date at job start Mon Mar 30 2020 04:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47239 * 2 1 4 4 C 1.50701 * 109.47191 * 119.99679 * 2 1 3 5 5 H 1.07998 * 119.99749 * 114.85486 * 4 2 1 6 6 C 1.37871 * 120.00103 * 294.85523 * 4 2 1 7 7 N 1.31510 * 120.00262 * 0.17346 * 6 4 2 8 8 Si 1.86807 * 119.99910 * 180.45415 * 6 4 2 9 9 H 1.48503 * 109.46737 * 264.73143 * 8 6 4 10 10 H 1.48495 * 109.47173 * 24.72725 * 8 6 4 11 11 H 1.48499 * 109.47060 * 144.73284 * 8 6 4 12 12 N 1.46493 * 109.46988 * 240.00049 * 2 1 3 13 13 C 1.34782 * 120.00271 * 85.00354 * 12 2 1 14 14 O 1.21284 * 119.99763 * 359.97438 * 13 12 2 15 15 C 1.50696 * 120.00172 * 179.97438 * 13 12 2 16 16 C 1.53000 * 109.46973 * 183.39481 * 15 13 12 17 17 C 1.50695 * 110.01795 * 298.99934 * 16 15 13 18 18 O 1.20829 * 119.99867 * 125.77303 * 17 16 15 19 19 O 1.34232 * 120.00506 * 305.76969 * 17 16 15 20 20 C 1.54269 * 110.02981 * 177.61299 * 16 15 13 21 21 C 1.54968 * 104.15703 * 217.13796 * 20 16 15 22 22 C 1.54894 * 102.77830 * 37.88885 * 21 20 16 23 23 C 1.53874 * 110.03050 * 60.39535 * 16 15 13 24 24 H 1.09006 * 109.46720 * 296.91949 * 1 2 3 25 25 H 1.09003 * 109.47520 * 56.91814 * 1 2 3 26 26 H 1.09001 * 109.46963 * 176.92411 * 1 2 3 27 27 H 0.96999 * 120.00457 * 180.27371 * 7 6 4 28 28 H 0.97001 * 120.00451 * 264.99316 * 12 2 1 29 29 H 1.08998 * 109.46997 * 303.39639 * 15 13 12 30 30 H 1.09004 * 109.47080 * 63.39449 * 15 13 12 31 31 H 0.96701 * 117.00160 * 179.97438 * 19 17 16 32 32 H 1.09001 * 110.48608 * 335.77851 * 20 16 15 33 33 H 1.08997 * 110.48971 * 98.43034 * 20 16 15 34 34 H 1.08995 * 110.71947 * 279.57187 * 21 20 16 35 35 H 1.09004 * 110.76230 * 156.22227 * 21 20 16 36 36 H 1.09002 * 110.48521 * 203.40945 * 22 21 20 37 37 H 1.08996 * 110.48672 * 80.76115 * 22 21 20 38 38 H 1.09001 * 110.02800 * 238.56656 * 23 16 15 39 39 H 1.08994 * 110.03089 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5830 -1.6343 1.1336 6 6 1.7890 -0.1806 2.4799 7 7 1.1155 0.9427 2.5981 8 14 2.4227 -1.0546 4.0045 9 1 1.3519 -1.9212 4.5593 10 1 3.5975 -1.8885 3.6447 11 1 2.8221 -0.0489 5.0215 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0182 -2.3572 14 8 1.8582 1.1585 -2.4117 15 6 2.6499 -0.7285 -3.5874 16 6 2.7817 0.2732 -4.7365 17 6 1.4372 0.8761 -5.0520 18 8 1.3008 2.0767 -5.0618 19 8 0.3911 0.0797 -5.3222 20 6 3.3525 -0.4285 -5.9862 21 6 4.2830 0.6334 -6.6252 22 6 4.9248 1.3140 -5.3907 23 6 3.7806 1.3808 -4.3581 24 1 -0.3633 0.4653 0.9164 25 1 -0.3634 0.5609 -0.8611 26 1 -0.3633 -1.0262 -0.0551 27 1 0.9477 1.3175 3.4769 28 1 2.2491 -1.6317 -1.1526 29 1 3.6234 -1.1720 -3.3785 30 1 1.9461 -1.5123 -3.8676 31 1 -0.4511 0.5125 -5.5184 32 1 3.9227 -1.3124 -5.7004 33 1 2.5500 -0.6965 -6.6732 34 1 3.7056 1.3524 -7.2062 35 1 5.0444 0.1579 -7.2436 36 1 5.2691 2.3167 -5.6439 37 1 5.7489 0.7117 -5.0085 38 1 3.2930 2.3546 -4.4035 39 1 4.1710 1.2050 -3.3558 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391804.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:23 Heat of formation + Delta-G solvation = -175.314319 kcal Electronic energy + Delta-G solvation = -21597.807277 eV Core-core repulsion = 18310.356824 eV Total energy + Delta-G solvation = -3287.450452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.02051 -40.28030 -38.55590 -36.99483 -36.64884 -34.31484 -32.87870 -30.86913 -29.67880 -27.42743 -27.14824 -24.42449 -23.10926 -21.79496 -21.16807 -20.27468 -18.97097 -18.63925 -17.79570 -17.49629 -17.06466 -16.62379 -16.21775 -15.93765 -15.58513 -15.24332 -14.70067 -14.39343 -14.19014 -14.08762 -13.70532 -13.27325 -12.99587 -12.85925 -12.75282 -12.53043 -12.45416 -12.34982 -12.22642 -12.14382 -11.99858 -11.91481 -11.73204 -11.53008 -11.15888 -11.10714 -10.67890 -10.55638 -9.71638 -8.19047 -6.36114 1.34629 1.44522 1.45454 1.56614 1.86236 2.14148 2.36128 2.64449 3.12979 3.46295 3.51749 3.77906 4.06809 4.25502 4.29547 4.44920 4.55549 4.61836 4.71368 4.73902 4.79687 4.84940 4.87623 4.99342 5.06893 5.11855 5.24392 5.27415 5.34869 5.42083 5.48773 5.61632 5.64561 5.70418 5.90382 6.06199 6.74040 6.98806 7.05840 7.32744 7.60730 8.88922 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030334 B = 0.004686 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.849242 B = 5973.585355 C = 6323.804331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.922 5.922 8 Si 0.974 3.026 9 H -0.273 1.273 10 H -0.259 1.259 11 H -0.289 1.289 12 N -0.705 5.705 13 C 0.485 3.515 14 O -0.592 6.592 15 C -0.121 4.121 16 C -0.035 4.035 17 C 0.492 3.508 18 O -0.547 6.547 19 O -0.512 6.512 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.111 4.111 24 H 0.055 0.945 25 H 0.007 0.993 26 H 0.045 0.955 27 H 0.264 0.736 28 H 0.407 0.593 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.420 0.580 32 H 0.117 0.883 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.050 0.950 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 -8.836 -17.739 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.167 3.833 3 H 0.013 0.987 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.798 3.202 9 H -0.198 1.198 10 H -0.183 1.183 11 H -0.215 1.215 12 N -0.354 5.354 13 C 0.272 3.728 14 O -0.473 6.473 15 C -0.160 4.160 16 C -0.036 4.036 17 C 0.335 3.665 18 O -0.437 6.437 19 O -0.325 6.325 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.242 0.758 29 H 0.158 0.842 30 H 0.147 0.853 31 H 0.280 0.720 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.092 -7.753 -17.538 20.120 hybrid contribution -0.843 0.488 1.272 1.602 sum 5.249 -7.265 -16.266 18.572 Atomic orbital electron populations 1.21844 0.98739 0.99105 0.99029 1.18277 0.90731 0.91953 0.82334 0.98691 1.21563 1.36278 1.09497 0.90809 0.90475 1.25862 0.94962 0.95494 1.02559 1.70104 1.40631 1.20601 1.24746 0.85306 0.78912 0.77971 0.77986 1.19806 1.18297 1.21477 1.46246 1.65300 1.14239 1.09655 1.21515 0.77791 0.87385 0.86064 1.90746 1.52645 1.18224 1.85718 1.21965 1.06413 0.98366 0.89281 1.21009 0.88125 0.96470 0.98016 1.23603 0.87325 0.84897 0.70656 1.90631 1.85132 1.18732 1.49189 1.84433 1.22254 1.44138 1.81711 1.22574 0.99765 0.99068 0.92583 1.22561 0.98991 0.97427 0.97006 1.22418 0.97000 1.01487 0.94857 1.22196 0.95510 0.97774 0.99406 0.92607 0.97419 0.93550 0.92672 0.75803 0.84225 0.85324 0.71996 0.86433 0.89776 0.92867 0.87949 0.91716 0.89289 0.93134 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 9.34 71.98 0.67 -5.94 16 2 C 0.27 14.18 2.47 44.25 0.11 14.29 16 3 H 0.00 -0.31 7.58 -2.38 -0.02 -0.33 16 4 C -0.54 -28.67 8.68 25.60 0.22 -28.45 16 5 H 0.08 3.73 7.72 -2.91 -0.02 3.71 16 6 C 0.01 0.59 5.31 84.65 0.45 1.04 16 7 N -0.92 -54.19 11.69 21.44 0.25 -53.94 16 8 Si 0.97 42.02 29.54 68.60 2.03 44.05 16 9 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.71 -28.52 5.07 -446.10 -2.26 -30.79 16 13 C 0.49 18.75 6.89 87.65 0.60 19.35 16 14 O -0.59 -29.24 13.10 3.02 0.04 -29.20 16 15 C -0.12 -2.94 4.42 29.85 0.13 -2.81 16 16 C -0.03 -0.89 0.59 -52.20 -0.03 -0.92 16 17 C 0.49 15.73 5.19 71.23 0.37 16.10 16 18 O -0.55 -22.42 15.72 25.25 0.40 -22.03 16 19 O -0.51 -12.76 13.10 -51.43 -0.67 -13.43 16 20 C -0.10 -1.62 5.90 31.70 0.19 -1.43 16 21 C -0.12 -1.95 6.91 31.91 0.22 -1.73 16 22 C -0.12 -2.42 6.83 31.67 0.22 -2.20 16 23 C -0.11 -3.32 4.76 31.32 0.15 -3.17 16 24 H 0.06 3.15 6.42 -2.38 -0.02 3.13 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.41 13.29 8.53 -92.71 -0.79 12.49 16 29 H 0.14 2.41 8.12 -2.39 -0.02 2.39 16 30 H 0.13 2.47 8.02 -2.39 -0.02 2.46 16 31 H 0.42 7.63 9.10 -74.06 -0.67 6.96 16 32 H 0.12 1.14 7.84 -2.39 -0.02 1.12 16 33 H 0.08 1.22 7.77 -2.39 -0.02 1.20 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 1.94 6.41 -2.39 -0.02 1.92 16 39 H 0.05 1.81 6.99 -2.39 -0.02 1.79 16 Total: -1.00 -78.27 318.48 2.69 -75.59 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.39 Total: 25.63 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 3.30 Total: 4.12 kcal Atomic # 7 Polarization: -82.72 SS G_CDS: -2.01 Total: -84.73 kcal Atomic # 8 Polarization: -64.42 SS G_CDS: -0.24 Total: -64.66 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -78.27 2.69 -75.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391804.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.726 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds