Wall clock time and date at job start Mon Mar 30 2020 04:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46605 * 2 1 4 4 C 1.50693 * 109.47405 * 240.00179 * 2 1 3 5 5 H 1.08007 * 119.99557 * 240.00239 * 4 2 1 6 6 C 1.37877 * 120.00510 * 59.99437 * 4 2 1 7 7 N 1.31518 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47284 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46870 * 120.00121 * 8 6 4 11 11 H 1.48502 * 109.47495 * 240.00230 * 8 6 4 12 12 N 1.46495 * 109.47079 * 119.99525 * 2 1 3 13 13 C 1.34785 * 120.00106 * 275.00237 * 12 2 1 14 14 O 1.21277 * 119.99888 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99637 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46542 * 174.47950 * 15 13 12 17 17 C 1.50701 * 110.01712 * 301.95731 * 16 15 13 18 18 O 1.20828 * 119.99854 * 125.72976 * 17 16 15 19 19 O 1.34228 * 120.00414 * 305.73143 * 17 16 15 20 20 C 1.54263 * 110.03061 * 180.56861 * 16 15 13 21 21 C 1.54965 * 104.16233 * 217.13490 * 20 16 15 22 22 C 1.54892 * 102.77498 * 37.89005 * 21 20 16 23 23 C 1.53875 * 110.03576 * 63.35113 * 16 15 13 24 24 H 1.08994 * 109.47137 * 300.00161 * 1 2 3 25 25 H 1.09005 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47105 * 60.00687 * 1 2 3 27 27 H 0.96994 * 119.99585 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00170 * 95.00379 * 12 2 1 29 29 H 1.08998 * 109.47221 * 294.47947 * 15 13 12 30 30 H 1.08996 * 109.46874 * 54.48507 * 15 13 12 31 31 H 0.96697 * 116.99990 * 180.02562 * 19 17 16 32 32 H 1.09002 * 110.48838 * 335.78769 * 20 16 15 33 33 H 1.09006 * 110.48667 * 98.42773 * 20 16 15 34 34 H 1.09002 * 110.72149 * 279.57773 * 21 20 16 35 35 H 1.08994 * 110.76389 * 156.21984 * 21 20 16 36 36 H 1.09001 * 110.48685 * 203.41111 * 22 21 20 37 37 H 1.08993 * 110.49103 * 80.76060 * 22 21 20 38 38 H 1.08995 * 110.03644 * 238.56984 * 23 16 15 39 39 H 1.09000 * 110.02994 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 3.1477 -2.2863 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1858 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6488 -0.7286 3.5878 16 6 2.8312 0.2824 4.7216 17 6 3.7924 1.3635 4.2990 18 8 3.4652 2.5244 4.3703 19 8 5.0120 1.0367 3.8435 20 6 3.3585 -0.4294 5.9845 21 6 2.6384 0.2894 7.1534 22 6 1.2229 0.5444 6.5786 23 6 1.4742 0.9018 5.0991 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 0.7095 1.1616 -3.4844 28 1 2.2491 -1.6317 1.1527 29 1 1.9262 -1.4867 3.8898 30 1 3.6045 -1.2046 3.3682 31 1 5.5936 1.7647 3.5848 32 1 3.0933 -1.4864 5.9656 33 1 4.4385 -0.3076 6.0683 34 1 3.1341 1.2306 7.3913 35 1 2.5886 -0.3548 8.0311 36 1 0.7452 1.3764 7.0961 37 1 0.6122 -0.3551 6.6554 38 1 1.5110 1.9843 4.9774 39 1 0.6856 0.4824 4.4742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050391806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:26 Heat of formation + Delta-G solvation = -150.077195 kcal Electronic energy + Delta-G solvation = -21601.496440 eV Core-core repulsion = 18315.140352 eV Total energy + Delta-G solvation = -3286.356088 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80956 -38.73606 -37.45991 -35.76237 -34.77602 -32.42159 -31.68775 -29.01380 -28.74823 -26.00301 -25.22924 -23.33622 -21.31142 -20.87779 -19.47650 -19.10381 -17.59577 -17.14407 -16.49433 -16.04030 -15.34463 -15.17585 -14.94203 -14.55427 -14.23020 -13.91090 -13.31581 -13.09306 -12.79551 -12.35738 -12.20896 -11.67018 -11.48746 -11.42346 -11.22092 -11.13593 -11.09648 -10.99149 -10.94585 -10.86756 -10.65891 -10.46406 -10.29191 -10.23875 -10.01258 -9.04310 -8.96490 -8.54885 -7.89624 -6.12211 -4.21575 2.55829 3.21744 3.23312 3.31029 3.33639 3.39833 4.00915 4.34331 4.46750 4.52262 4.76215 5.10467 5.18661 5.20264 5.35390 5.44202 5.46339 5.56230 5.69726 5.74033 5.76471 5.79953 5.90244 6.09288 6.14845 6.34506 6.54971 6.81066 6.82935 6.97000 7.15896 7.47214 7.56276 7.69587 7.92130 8.15588 8.19786 8.66796 8.78309 9.13181 9.46174 10.93810 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.004615 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.291661 B = 6065.899959 C = 6262.620081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.047 0.953 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.492 3.508 14 O -0.544 6.544 15 C -0.134 4.134 16 C -0.030 4.030 17 C 0.496 3.504 18 O -0.499 6.499 19 O -0.521 6.521 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.107 4.107 24 H 0.014 0.986 25 H 0.026 0.974 26 H 0.089 0.911 27 H 0.264 0.736 28 H 0.388 0.612 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.406 0.594 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -5.189 16.622 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.065 0.935 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.356 5.356 13 C 0.276 3.724 14 O -0.422 6.422 15 C -0.175 4.175 16 C -0.032 4.032 17 C 0.337 3.663 18 O -0.385 6.385 19 O -0.333 6.333 20 C -0.150 4.150 21 C -0.164 4.164 22 C -0.164 4.164 23 C -0.144 4.144 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.220 0.780 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.264 0.736 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.882 -4.205 16.606 17.565 hybrid contribution 0.798 -0.455 -1.278 1.574 sum 4.680 -4.660 15.328 16.690 Atomic orbital electron populations 1.22066 0.98485 0.99020 1.00895 1.18728 0.91004 0.93948 0.80073 0.93503 1.21258 1.32349 1.13185 0.90349 0.92050 1.24899 0.94827 0.94956 0.99085 1.69920 1.35949 1.22453 1.23753 0.86396 0.78606 0.79515 0.82588 1.19731 1.20872 1.20884 1.46512 1.65048 1.13505 1.10521 1.20436 0.79170 0.87839 0.84946 1.90744 1.50855 1.15700 1.84933 1.21908 1.03896 0.98434 0.93233 1.20830 0.94154 0.92527 0.95659 1.22988 0.80440 0.89948 0.72939 1.90646 1.76014 1.21529 1.50345 1.84478 1.26937 1.44816 1.77024 1.22507 1.00495 0.99934 0.92102 1.22548 0.96175 1.00361 0.97335 1.22428 0.96636 1.01353 0.95941 1.22251 0.93528 1.03640 0.94981 0.96651 0.95527 0.89221 0.92642 0.77961 0.87989 0.88366 0.73570 0.89794 0.90724 0.91504 0.91139 0.91430 0.91542 0.88819 0.90604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.78 2.56 -69.09 -0.18 6.60 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.71 -14.61 5.07 -54.93 -0.28 -14.89 16 13 C 0.49 9.60 6.98 -10.98 -0.08 9.52 16 14 O -0.54 -12.84 13.08 1.15 0.02 -12.82 16 15 C -0.13 -1.84 4.37 -27.88 -0.12 -1.96 16 16 C -0.03 -0.41 0.59 -154.54 -0.09 -0.50 16 17 C 0.50 8.08 5.19 36.01 0.19 8.26 16 18 O -0.50 -9.83 15.75 -21.73 -0.34 -10.18 16 19 O -0.52 -7.08 13.15 -39.25 -0.52 -7.60 16 20 C -0.11 -1.12 5.90 -25.03 -0.15 -1.27 16 21 C -0.13 -1.20 6.91 -24.70 -0.17 -1.37 16 22 C -0.13 -1.35 6.83 -25.07 -0.17 -1.52 16 23 C -0.11 -1.55 4.72 -25.61 -0.12 -1.67 16 24 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.39 6.85 8.54 -40.82 -0.35 6.50 16 29 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 1.19 8.10 -51.93 -0.42 0.76 16 31 H 0.41 4.06 9.10 45.56 0.41 4.48 16 32 H 0.08 0.67 7.85 -51.93 -0.41 0.27 16 33 H 0.07 0.71 7.77 -51.93 -0.40 0.31 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.65 6.41 -51.93 -0.33 1.32 16 39 H 0.08 1.18 7.04 -51.93 -0.37 0.81 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -33.55 318.07 -6.74 -40.28 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.07 Total: 9.30 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -0.94 Total: -0.05 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.35 Total: -39.41 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.84 Total: -30.60 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.55 -6.74 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.796 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds