Wall clock time and date at job start Mon Mar 30 2020 04:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46605 * 2 1 4 4 C 1.50693 * 109.47405 * 240.00179 * 2 1 3 5 5 H 1.08007 * 119.99557 * 240.00239 * 4 2 1 6 6 C 1.37877 * 120.00510 * 59.99437 * 4 2 1 7 7 N 1.31518 * 119.99657 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00158 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47284 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46870 * 120.00121 * 8 6 4 11 11 H 1.48502 * 109.47495 * 240.00230 * 8 6 4 12 12 N 1.46495 * 109.47079 * 119.99525 * 2 1 3 13 13 C 1.34785 * 120.00106 * 275.00237 * 12 2 1 14 14 O 1.21277 * 119.99888 * 0.02562 * 13 12 2 15 15 C 1.50706 * 119.99637 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.46542 * 174.47950 * 15 13 12 17 17 C 1.50701 * 110.01712 * 301.95731 * 16 15 13 18 18 O 1.20828 * 119.99854 * 125.72976 * 17 16 15 19 19 O 1.34228 * 120.00414 * 305.73143 * 17 16 15 20 20 C 1.54263 * 110.03061 * 180.56861 * 16 15 13 21 21 C 1.54965 * 104.16233 * 217.13490 * 20 16 15 22 22 C 1.54892 * 102.77498 * 37.89005 * 21 20 16 23 23 C 1.53875 * 110.03576 * 63.35113 * 16 15 13 24 24 H 1.08994 * 109.47137 * 300.00161 * 1 2 3 25 25 H 1.09005 * 109.46605 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47105 * 60.00687 * 1 2 3 27 27 H 0.96994 * 119.99585 * 179.97438 * 7 6 4 28 28 H 0.97007 * 120.00170 * 95.00379 * 12 2 1 29 29 H 1.08998 * 109.47221 * 294.47947 * 15 13 12 30 30 H 1.08996 * 109.46874 * 54.48507 * 15 13 12 31 31 H 0.96697 * 116.99990 * 180.02562 * 19 17 16 32 32 H 1.09002 * 110.48838 * 335.78769 * 20 16 15 33 33 H 1.09006 * 110.48667 * 98.42773 * 20 16 15 34 34 H 1.09002 * 110.72149 * 279.57773 * 21 20 16 35 35 H 1.08994 * 110.76389 * 156.21984 * 21 20 16 36 36 H 1.09001 * 110.48685 * 203.41111 * 22 21 20 37 37 H 1.08993 * 110.49103 * 80.76060 * 22 21 20 38 38 H 1.08995 * 110.03644 * 238.56984 * 23 16 15 39 39 H 1.09000 * 110.02994 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3227 -1.1196 -4.0078 9 1 3.1477 -2.2863 -3.6036 10 1 1.1680 -1.5868 -4.8164 11 1 3.1475 -0.1858 -4.8160 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0180 2.3572 14 8 1.8581 1.1586 2.4117 15 6 2.6488 -0.7286 3.5878 16 6 2.8312 0.2824 4.7216 17 6 3.7924 1.3635 4.2990 18 8 3.4652 2.5244 4.3703 19 8 5.0120 1.0367 3.8435 20 6 3.3585 -0.4294 5.9845 21 6 2.6384 0.2894 7.1534 22 6 1.2229 0.5444 6.5786 23 6 1.4742 0.9018 5.0991 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 -0.8901 27 1 0.7095 1.1616 -3.4844 28 1 2.2491 -1.6317 1.1527 29 1 1.9262 -1.4867 3.8898 30 1 3.6045 -1.2046 3.3682 31 1 5.5936 1.7647 3.5848 32 1 3.0933 -1.4864 5.9656 33 1 4.4385 -0.3076 6.0683 34 1 3.1341 1.2306 7.3913 35 1 2.5886 -0.3548 8.0311 36 1 0.7452 1.3764 7.0961 37 1 0.6122 -0.3551 6.6554 38 1 1.5110 1.9843 4.9774 39 1 0.6856 0.4824 4.4742 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050391806.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:25 Heat of formation + Delta-G solvation = -174.283544 kcal Electronic energy + Delta-G solvation = -21602.546106 eV Core-core repulsion = 18315.140352 eV Total energy + Delta-G solvation = -3287.405754 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03147 -40.28295 -38.56393 -37.01821 -36.66385 -34.32581 -32.87524 -30.81759 -29.67197 -27.42934 -27.15318 -24.43625 -23.10201 -21.78012 -21.15718 -20.28706 -18.98594 -18.66556 -17.80031 -17.49746 -17.02748 -16.73092 -16.14435 -15.93718 -15.50807 -15.34520 -14.71186 -14.42573 -14.18980 -13.98164 -13.77127 -13.26754 -13.02268 -12.83557 -12.74612 -12.56228 -12.44175 -12.29442 -12.23298 -12.12089 -11.99566 -11.90140 -11.73321 -11.52372 -11.16914 -11.09923 -10.69292 -10.53290 -9.71920 -8.18550 -6.36467 1.32037 1.43712 1.44494 1.56900 1.85761 2.12916 2.35587 2.64696 3.12047 3.46190 3.51886 3.78607 4.06363 4.26392 4.29292 4.44536 4.56422 4.62617 4.73578 4.74170 4.80446 4.85274 4.90937 4.99705 5.09157 5.12819 5.24817 5.28236 5.36258 5.43458 5.49402 5.61648 5.68759 5.69141 5.91100 6.09715 6.72857 6.98723 7.03261 7.32259 7.60343 8.88052 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032464 B = 0.004615 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.291661 B = 6065.899959 C = 6262.620081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.010 1.010 4 C -0.544 4.544 5 H 0.076 0.924 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.974 3.026 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.705 5.705 13 C 0.484 3.516 14 O -0.591 6.591 15 C -0.121 4.121 16 C -0.035 4.035 17 C 0.489 3.511 18 O -0.547 6.547 19 O -0.513 6.513 20 C -0.103 4.103 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.109 4.109 24 H 0.010 0.990 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.264 0.736 28 H 0.406 0.594 29 H 0.143 0.857 30 H 0.126 0.874 31 H 0.419 0.581 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.675 -8.713 17.864 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.008 0.992 4 C -0.582 4.582 5 H 0.094 0.906 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.799 3.201 9 H -0.180 1.180 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.354 5.354 13 C 0.272 3.728 14 O -0.473 6.473 15 C -0.160 4.160 16 C -0.036 4.036 17 C 0.332 3.668 18 O -0.437 6.437 19 O -0.326 6.326 20 C -0.140 4.140 21 C -0.160 4.160 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.029 0.971 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.242 0.758 29 H 0.160 0.840 30 H 0.144 0.856 31 H 0.280 0.720 32 H 0.136 0.864 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.121 0.879 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.068 0.932 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.048 -7.781 17.875 20.138 hybrid contribution 0.457 0.736 -1.664 1.876 sum 5.505 -7.045 16.210 18.513 Atomic orbital electron populations 1.21874 0.98388 0.99470 0.99323 1.18275 0.91047 0.91604 0.82322 0.99208 1.21596 1.32407 1.13502 0.90740 0.90623 1.25851 0.94885 0.95576 1.02514 1.70081 1.37217 1.24094 1.24495 0.85266 0.78092 0.78527 0.78255 1.18041 1.20419 1.21164 1.46253 1.65290 1.14263 1.09625 1.21528 0.77827 0.87440 0.86052 1.90744 1.52558 1.18217 1.85748 1.21959 1.05976 0.98380 0.89688 1.21033 0.93055 0.91996 0.97537 1.23711 0.81090 0.90068 0.71904 1.90631 1.76983 1.23661 1.52415 1.84441 1.26347 1.45412 1.76411 1.22575 1.00840 1.01212 0.89410 1.22561 0.94727 1.00415 0.98334 1.22423 0.98107 1.02282 0.92918 1.22188 0.93938 1.00875 0.97699 0.97121 0.93811 0.91861 0.92645 0.75822 0.83962 0.85583 0.72023 0.86356 0.89966 0.92976 0.87946 0.91692 0.89147 0.93198 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.78 9.26 71.98 0.67 -6.12 16 2 C 0.27 14.25 2.56 44.24 0.11 14.36 16 3 H -0.01 -0.63 7.58 -2.38 -0.02 -0.65 16 4 C -0.54 -28.88 8.73 25.60 0.22 -28.66 16 5 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 8 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 9 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 N -0.70 -28.66 5.07 -446.09 -2.26 -30.92 16 13 C 0.48 18.73 6.98 87.66 0.61 19.34 16 14 O -0.59 -29.14 13.08 1.19 0.02 -29.13 16 15 C -0.12 -2.94 4.37 29.85 0.13 -2.81 16 16 C -0.03 -0.89 0.59 -52.20 -0.03 -0.92 16 17 C 0.49 15.96 5.19 71.24 0.37 16.33 16 18 O -0.55 -22.73 15.75 24.81 0.39 -22.34 16 19 O -0.51 -13.45 13.15 -51.40 -0.68 -14.12 16 20 C -0.10 -1.63 5.90 31.69 0.19 -1.44 16 21 C -0.12 -1.94 6.91 31.91 0.22 -1.72 16 22 C -0.12 -2.32 6.83 31.67 0.22 -2.11 16 23 C -0.11 -3.18 4.72 31.32 0.15 -3.04 16 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.04 2.04 8.14 -2.38 -0.02 2.02 16 26 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.41 13.42 8.54 -92.70 -0.79 12.63 16 29 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.13 2.46 8.10 -2.39 -0.02 2.44 16 31 H 0.42 8.27 9.10 -74.06 -0.67 7.59 16 32 H 0.12 1.13 7.85 -2.39 -0.02 1.11 16 33 H 0.08 1.23 7.77 -2.38 -0.02 1.21 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.05 1.89 6.41 -2.39 -0.02 1.87 16 39 H 0.06 1.86 7.04 -2.39 -0.02 1.84 16 Total: -1.00 -78.11 318.07 2.65 -75.46 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: -0.40 Total: 26.16 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 3.31 Total: 4.29 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -2.02 Total: -84.44 kcal Atomic # 8 Polarization: -65.33 SS G_CDS: -0.27 Total: -65.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -78.11 2.65 -75.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050391806.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.825 kcal (2) G-P(sol) polarization free energy of solvation -78.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds