Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48494 * 109.46924 * 269.99587 * 3 2 1 5 5 H 1.48505 * 109.47178 * 29.99803 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99751 * 3 2 1 7 7 C 1.39588 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 359.97438 * 7 2 1 9 9 N 1.36116 * 119.99685 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99548 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99803 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00070 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47859 * 179.97438 * 17 16 15 19 19 C 1.48533 * 110.99670 * 52.60024 * 18 17 16 20 20 C 1.54936 * 103.22827 * 159.72645 * 19 18 17 21 21 C 1.54602 * 102.91755 * 322.58844 * 20 19 18 22 22 C 1.47895 * 111.00585 * 169.99973 * 18 17 16 23 23 H 0.97006 * 119.99257 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00441 * 359.97438 * 9 7 2 25 25 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 26 26 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 27 27 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 28 28 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 29 29 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 30 30 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 31 31 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 32 32 H 1.09002 * 110.67270 * 278.16471 * 19 18 17 33 33 H 1.08998 * 110.66667 * 41.29259 * 19 18 17 34 34 H 1.09002 * 110.72666 * 204.23420 * 20 19 18 35 35 H 1.08998 * 110.72369 * 80.94172 * 20 19 18 36 36 H 1.09001 * 110.30688 * 263.03605 * 21 20 19 37 37 H 1.08996 * 110.30747 * 140.87557 * 21 20 19 38 38 H 1.08994 * 109.91810 * 333.51090 * 22 18 17 39 39 H 1.08999 * 109.91451 * 94.60787 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0462 -1.4000 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0080 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0014 9 7 3.3692 -1.2089 0.0011 10 6 4.0430 -2.3762 0.0011 11 8 3.4355 -3.4284 0.0011 12 6 5.5314 -2.3763 0.0022 13 8 6.1386 -1.3246 0.0027 14 7 6.2051 -3.5435 0.0027 15 6 7.6701 -3.5436 0.0033 16 6 8.1801 -4.9861 0.0045 17 6 9.7100 -4.9863 0.0044 18 7 10.1997 -6.3712 0.0062 19 6 9.5830 -7.1552 -1.0944 20 6 10.5579 -8.3465 -1.2706 21 6 11.9422 -7.6967 -1.0434 22 6 11.6583 -6.4181 -0.2336 23 1 -0.4849 0.8402 -0.0004 24 1 3.8543 -0.3690 0.0007 25 1 5.7201 -4.3835 0.0027 26 1 8.0338 -3.0300 -0.8867 27 1 8.0332 -3.0296 0.8933 28 1 7.8164 -5.4993 0.8947 29 1 7.8171 -5.5006 -0.8852 30 1 10.0734 -4.4731 -0.8860 31 1 10.0734 -4.4717 0.8940 32 1 8.5924 -7.5079 -0.8074 33 1 9.5316 -6.5619 -2.0074 34 1 10.4857 -8.7584 -2.2772 35 1 10.3656 -9.1160 -0.5230 36 1 12.4034 -7.4452 -1.9984 37 1 12.5868 -8.3683 -0.4764 38 1 11.9695 -5.5418 -0.8021 39 1 12.1900 -6.4516 0.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062079259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -72.077916 kcal Electronic energy + Delta-G solvation = -19879.876765 eV Core-core repulsion = 16629.195731 eV Total energy + Delta-G solvation = -3250.681035 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71896 -39.25634 -37.44157 -35.60355 -34.30730 -33.08382 -31.87963 -30.12071 -29.14044 -26.35877 -25.02656 -22.85340 -21.88430 -21.09692 -20.73411 -19.40253 -18.92039 -16.98317 -16.46551 -16.30605 -15.85792 -15.75460 -15.00901 -14.77877 -14.43041 -14.32653 -13.59468 -13.50374 -13.28938 -12.89475 -12.80285 -12.55647 -12.41125 -12.02747 -11.75390 -11.65688 -11.48462 -11.40166 -11.28473 -10.99201 -10.87733 -10.73617 -10.56390 -10.10260 -9.77332 -8.87495 -8.73999 -8.43049 -8.41880 -6.58975 -4.00490 2.29358 3.04256 3.07540 3.10421 3.22723 3.70168 3.95618 4.14987 4.29275 4.35526 4.59733 4.71268 4.76825 4.89776 4.94866 5.03170 5.12167 5.15975 5.27486 5.36262 5.40797 5.46304 5.50349 5.55666 5.63815 5.69827 5.73478 5.83608 5.96004 6.01504 6.54990 6.63135 6.72810 7.26045 7.64826 7.91761 8.24193 8.50812 8.74346 9.19168 9.61343 10.51081 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051746 B = 0.002842 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.974245 B = 9851.312773 C =10265.651844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.052 3.948 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.309 4.309 8 H 0.128 0.872 9 N -0.527 5.527 10 C 0.404 3.596 11 O -0.579 6.579 12 C 0.513 3.487 13 O -0.551 6.551 14 N -0.712 5.712 15 C 0.122 3.878 16 C -0.132 4.132 17 C 0.051 3.949 18 N -0.518 5.518 19 C 0.030 3.970 20 C -0.125 4.125 21 C -0.132 4.132 22 C 0.034 3.966 23 H 0.281 0.719 24 H 0.384 0.616 25 H 0.412 0.588 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.766 -10.992 -1.912 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.438 4.438 8 H 0.145 0.855 9 N -0.164 5.164 10 C 0.189 3.811 11 O -0.465 6.465 12 C 0.298 3.702 13 O -0.429 6.429 14 N -0.366 5.366 15 C -0.003 4.003 16 C -0.170 4.170 17 C -0.078 4.078 18 N -0.242 5.242 19 C -0.097 4.097 20 C -0.163 4.163 21 C -0.170 4.170 22 C -0.094 4.094 23 H 0.092 0.908 24 H 0.218 0.782 25 H 0.248 0.752 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.479 -11.006 -1.394 24.175 hybrid contribution 0.557 1.366 -0.776 1.667 sum 22.036 -9.640 -2.170 24.150 Atomic orbital electron populations 1.69448 1.06111 1.28637 1.44448 1.25240 0.95559 0.98605 0.96212 0.86669 0.80440 0.83023 0.79783 1.18911 1.19527 1.18414 1.19564 0.79133 0.97086 1.48047 0.85491 1.41828 1.07578 1.06942 1.60056 1.18837 0.86429 0.85279 0.90574 1.90620 1.68777 1.30351 1.56794 1.20629 0.89848 0.83550 0.76209 1.90675 1.70927 1.31382 1.49887 1.45629 1.06443 1.09480 1.75045 1.21246 0.80187 0.96468 1.02367 1.21848 0.95020 0.96356 1.03819 1.22200 0.94784 0.89329 1.01470 1.64811 1.04246 1.11790 1.43385 1.23292 0.99073 0.94502 0.92852 1.22494 0.94203 0.97769 1.01854 1.22401 0.97834 0.96803 0.99963 1.22876 0.89286 0.97278 0.99928 0.90781 0.78151 0.75246 0.91660 0.91371 0.90036 0.90984 0.94281 0.90117 0.89617 0.93559 0.91061 0.90665 0.91581 0.91007 0.93723 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.70 13.94 55.53 0.77 -22.93 16 2 C 0.05 1.40 5.51 -17.39 -0.10 1.30 16 3 Si 0.88 19.44 27.74 -169.99 -4.72 14.73 16 4 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 6 H -0.26 -5.59 6.53 56.52 0.37 -5.22 16 7 C -0.31 -8.67 10.16 -15.15 -0.15 -8.83 16 8 H 0.13 3.96 7.36 -52.49 -0.39 3.58 16 9 N -0.53 -13.43 5.06 -11.59 -0.06 -13.49 16 10 C 0.40 9.87 7.82 -11.87 -0.09 9.78 16 11 O -0.58 -15.36 16.03 5.37 0.09 -15.28 16 12 C 0.51 10.66 7.87 -11.88 -0.09 10.57 16 13 O -0.55 -12.21 16.47 5.42 0.09 -12.12 16 14 N -0.71 -11.53 5.55 -60.93 -0.34 -11.87 16 15 C 0.12 1.54 5.67 -4.04 -0.02 1.51 16 16 C -0.13 -1.29 4.99 -26.74 -0.13 -1.42 16 17 C 0.05 0.45 5.03 -3.83 -0.02 0.43 16 18 N -0.52 -4.64 5.40 -230.47 -1.24 -5.88 16 19 C 0.03 0.25 5.10 -1.90 -0.01 0.24 16 20 C -0.13 -0.85 7.06 -24.87 -0.18 -1.02 16 21 C -0.13 -0.84 6.93 -25.37 -0.18 -1.02 16 22 C 0.03 0.26 6.69 -2.76 -0.02 0.24 16 23 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 24 H 0.38 9.19 5.22 -40.82 -0.21 8.98 16 25 H 0.41 6.28 7.93 -40.82 -0.32 5.96 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.68 6.79 -51.93 -0.35 0.33 16 30 H 0.04 0.34 7.81 -51.93 -0.41 -0.07 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 33 H 0.05 0.38 8.00 -51.93 -0.42 -0.04 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.04 0.33 7.57 -51.93 -0.39 -0.07 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -31.28 323.68 -7.38 -38.66 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -5.86 Total: 11.51 kcal Atomic # 6 Polarization: 12.78 SS G_CDS: -0.99 Total: 11.79 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.87 Total: -54.17 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: 0.18 Total: -27.39 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -4.72 Total: 14.73 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.28 -7.38 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062079259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.415 kcal (2) G-P(sol) polarization free energy of solvation -31.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds