Wall clock time and date at job start Mon Mar 30 2020 05:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86798 * 120.00263 * 2 1 4 4 H 1.48494 * 109.46924 * 269.99587 * 3 2 1 5 5 H 1.48505 * 109.47178 * 29.99803 * 3 2 1 6 6 H 1.48498 * 109.47139 * 149.99751 * 3 2 1 7 7 C 1.39588 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99939 * 359.97438 * 7 2 1 9 9 N 1.36116 * 119.99685 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99548 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.48837 * 119.99803 * 180.02562 * 10 9 7 13 13 O 1.21439 * 120.00070 * 359.97438 * 12 10 9 14 14 N 1.34771 * 119.99629 * 179.97438 * 12 10 9 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 14 12 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 N 1.46901 * 109.47859 * 179.97438 * 17 16 15 19 19 C 1.48533 * 110.99670 * 52.60024 * 18 17 16 20 20 C 1.54936 * 103.22827 * 159.72645 * 19 18 17 21 21 C 1.54602 * 102.91755 * 322.58844 * 20 19 18 22 22 C 1.47895 * 111.00585 * 169.99973 * 18 17 16 23 23 H 0.97006 * 119.99257 * 0.02562 * 1 2 3 24 24 H 0.96995 * 120.00441 * 359.97438 * 9 7 2 25 25 H 0.96996 * 120.00772 * 359.97438 * 14 12 10 26 26 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 27 27 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 28 28 H 1.09002 * 109.47153 * 300.00008 * 16 15 14 29 29 H 1.08998 * 109.47533 * 59.99637 * 16 15 14 30 30 H 1.09002 * 109.47103 * 300.00247 * 17 16 15 31 31 H 1.09001 * 109.47066 * 60.00169 * 17 16 15 32 32 H 1.09002 * 110.67270 * 278.16471 * 19 18 17 33 33 H 1.08998 * 110.66667 * 41.29259 * 19 18 17 34 34 H 1.09002 * 110.72666 * 204.23420 * 20 19 18 35 35 H 1.08998 * 110.72369 * 80.94172 * 20 19 18 36 36 H 1.09001 * 110.30688 * 263.03605 * 21 20 19 37 37 H 1.08996 * 110.30747 * 140.87557 * 21 20 19 38 38 H 1.08994 * 109.91810 * 333.51090 * 22 18 17 39 39 H 1.08999 * 109.91451 * 94.60787 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.4918 2.0462 -1.4000 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7001 7 6 2.0080 -1.2089 0.0005 8 1 1.4680 -2.1442 0.0014 9 7 3.3692 -1.2089 0.0011 10 6 4.0430 -2.3762 0.0011 11 8 3.4355 -3.4284 0.0011 12 6 5.5314 -2.3763 0.0022 13 8 6.1386 -1.3246 0.0027 14 7 6.2051 -3.5435 0.0027 15 6 7.6701 -3.5436 0.0033 16 6 8.1801 -4.9861 0.0045 17 6 9.7100 -4.9863 0.0044 18 7 10.1997 -6.3712 0.0062 19 6 9.5830 -7.1552 -1.0944 20 6 10.5579 -8.3465 -1.2706 21 6 11.9422 -7.6967 -1.0434 22 6 11.6583 -6.4181 -0.2336 23 1 -0.4849 0.8402 -0.0004 24 1 3.8543 -0.3690 0.0007 25 1 5.7201 -4.3835 0.0027 26 1 8.0338 -3.0300 -0.8867 27 1 8.0332 -3.0296 0.8933 28 1 7.8164 -5.4993 0.8947 29 1 7.8171 -5.5006 -0.8852 30 1 10.0734 -4.4731 -0.8860 31 1 10.0734 -4.4717 0.8940 32 1 8.5924 -7.5079 -0.8074 33 1 9.5316 -6.5619 -2.0074 34 1 10.4857 -8.7584 -2.2772 35 1 10.3656 -9.1160 -0.5230 36 1 12.4034 -7.4452 -1.9984 37 1 12.5868 -8.3683 -0.4764 38 1 11.9695 -5.5418 -0.8021 39 1 12.1900 -6.4516 0.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062079259.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:47 Heat of formation + Delta-G solvation = -96.971632 kcal Electronic energy + Delta-G solvation = -19880.956238 eV Core-core repulsion = 16629.195731 eV Total energy + Delta-G solvation = -3251.760507 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.41379 -39.97047 -39.26408 -36.93939 -36.17291 -34.20322 -33.83738 -31.01374 -29.74667 -28.12994 -26.29313 -24.10766 -23.05956 -21.71749 -21.55914 -21.26093 -20.63981 -18.73320 -17.79934 -17.17228 -17.11373 -16.82400 -16.68734 -16.06963 -15.90244 -15.31994 -15.07420 -14.76689 -14.70419 -14.40020 -14.07134 -13.94908 -13.37544 -13.09899 -12.91599 -12.58332 -12.56472 -12.43510 -12.27087 -12.19079 -12.01569 -11.95803 -11.72290 -11.71648 -11.40619 -10.48544 -10.35861 -10.25154 -9.38425 -8.63145 -6.17242 0.50744 1.28756 1.32992 1.38966 1.71104 2.09901 2.27660 2.95651 3.05901 3.12082 3.70882 3.78301 3.81620 3.96651 3.99938 4.15609 4.20680 4.37081 4.47719 4.57045 4.66610 4.71200 4.75249 4.92811 4.98313 5.07475 5.09784 5.11482 5.22770 5.25361 5.28837 5.32685 5.73061 5.94131 6.05404 6.09119 6.36669 6.58008 6.90493 7.13805 7.61245 8.51334 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.051746 B = 0.002842 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.974245 B = 9851.312773 C =10265.651844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.010 3.990 3 Si 0.949 3.051 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.532 5.532 10 C 0.405 3.595 11 O -0.604 6.604 12 C 0.522 3.478 13 O -0.561 6.561 14 N -0.692 5.692 15 C 0.121 3.879 16 C -0.120 4.120 17 C 0.054 3.946 18 N -0.531 5.531 19 C 0.027 3.973 20 C -0.124 4.124 21 C -0.130 4.130 22 C 0.031 3.969 23 H 0.291 0.709 24 H 0.393 0.607 25 H 0.417 0.583 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.043 0.957 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.374 -10.474 -2.120 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.195 4.195 3 Si 0.768 3.232 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.172 1.172 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.170 5.170 10 C 0.190 3.810 11 O -0.491 6.491 12 C 0.304 3.696 13 O -0.441 6.441 14 N -0.344 5.344 15 C -0.003 4.003 16 C -0.158 4.158 17 C -0.074 4.074 18 N -0.256 5.256 19 C -0.101 4.101 20 C -0.162 4.162 21 C -0.168 4.168 22 C -0.097 4.097 23 H 0.101 0.899 24 H 0.229 0.771 25 H 0.254 0.746 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.099 -10.527 -1.603 26.347 hybrid contribution -0.200 1.013 -0.708 1.252 sum 23.899 -9.514 -2.311 25.827 Atomic orbital electron populations 1.69553 1.07886 1.30382 1.45063 1.26099 0.96396 1.02252 0.94730 0.85579 0.79371 0.77586 0.80623 1.17564 1.18052 1.17197 1.19176 0.80408 0.96071 1.51259 0.90399 1.41703 1.06644 1.07728 1.60946 1.19673 0.88412 0.84584 0.88296 1.90601 1.70156 1.31317 1.57042 1.19855 0.87885 0.84758 0.77090 1.90676 1.70425 1.31979 1.50984 1.45649 1.08128 1.08198 1.72471 1.21501 0.77376 0.98578 1.02797 1.21733 0.95740 0.94251 1.04048 1.22143 0.93812 0.89669 1.01824 1.64808 1.05156 1.11670 1.43953 1.23330 0.99249 0.94946 0.92572 1.22502 0.94067 0.97242 1.02413 1.22411 0.97740 0.96344 1.00293 1.22937 0.88440 0.98000 1.00296 0.89901 0.77073 0.74594 0.91128 0.90952 0.90121 0.90489 0.93882 0.89860 0.89998 0.93611 0.90042 0.90917 0.90819 0.90268 0.93489 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.83 13.94 21.77 0.30 -50.53 16 2 C 0.01 0.56 5.51 85.14 0.47 1.03 16 3 Si 0.95 39.41 27.74 68.60 1.90 41.31 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.25 -9.76 6.53 99.48 0.65 -9.11 16 7 C -0.34 -19.74 10.16 84.35 0.86 -18.88 16 8 H 0.08 5.19 7.36 -2.91 -0.02 5.16 16 9 N -0.53 -27.28 5.06 -308.87 -1.56 -28.85 16 10 C 0.41 19.87 7.82 87.08 0.68 20.55 16 11 O -0.60 -32.66 16.03 -3.71 -0.06 -32.72 16 12 C 0.52 20.95 7.87 87.08 0.69 21.64 16 13 O -0.56 -23.72 16.47 -3.52 -0.06 -23.78 16 14 N -0.69 -21.15 5.55 -465.00 -2.58 -23.73 16 15 C 0.12 2.75 5.67 86.38 0.49 3.24 16 16 C -0.12 -2.06 4.99 30.59 0.15 -1.91 16 17 C 0.05 0.85 5.03 86.30 0.43 1.28 16 18 N -0.53 -8.51 5.40 -883.07 -4.76 -13.27 16 19 C 0.03 0.38 5.10 86.65 0.44 0.83 16 20 C -0.12 -1.45 7.06 31.80 0.22 -1.23 16 21 C -0.13 -1.39 6.93 31.47 0.22 -1.17 16 22 C 0.03 0.41 6.69 86.45 0.58 0.99 16 23 H 0.29 14.91 8.30 -92.70 -0.77 14.14 16 24 H 0.39 18.44 5.22 -92.71 -0.48 17.96 16 25 H 0.42 12.09 7.93 -92.71 -0.74 11.35 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.28 6.79 -2.39 -0.02 1.26 16 30 H 0.04 0.64 7.81 -2.39 -0.02 0.62 16 31 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.22 7.67 -2.39 -0.02 1.20 16 33 H 0.05 0.66 8.00 -2.39 -0.02 0.64 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.05 0.59 7.57 -2.39 -0.02 0.57 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -68.28 323.68 -1.80 -70.08 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: -0.21 Total: 35.14 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 5.23 Total: 26.35 kcal Atomic # 7 Polarization: -107.78 SS G_CDS: -8.60 Total: -116.38 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.12 Total: -56.50 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 1.90 Total: 41.31 kcal Total: -68.28 -1.80 -70.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062079259.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.890 kcal (2) G-P(sol) polarization free energy of solvation -68.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds