Wall clock time and date at job start Mon Mar 30 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52550 * 1 3 3 H 1.11245 * 106.75287 * 2 1 4 4 N 1.45402 * 112.43535 * 117.33108 * 2 1 3 5 5 C 1.44613 * 117.22232 * 52.28825 * 4 2 1 6 6 C 1.51621 * 114.86040 * 67.49689 * 5 4 2 7 7 C 1.52936 * 110.77009 * 288.95296 * 6 5 4 8 8 N 1.46829 * 108.87613 * 82.82954 * 7 6 5 9 9 C 1.47468 * 118.45298 * 116.88481 * 8 7 6 10 10 C 1.50704 * 109.46994 * 89.99780 * 9 8 7 11 11 O 1.21276 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99995 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99794 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47003 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00297 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47152 * 59.99949 * 18 16 14 20 20 H 1.48503 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47079 * 299.99979 * 18 16 14 22 22 C 1.32926 * 123.27643 * 296.91959 * 8 7 6 23 23 O 1.22760 * 117.10365 * 178.85761 * 22 8 7 24 24 H 1.09002 * 109.47329 * 299.99834 * 1 2 3 25 25 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47160 * 60.00053 * 1 2 3 27 27 H 1.00935 * 112.05893 * 183.56095 * 4 2 1 28 28 H 1.10030 * 107.85309 * 187.02088 * 5 4 2 29 29 H 1.08698 * 110.88934 * 303.37783 * 5 4 2 30 30 H 1.08985 * 109.28851 * 49.60864 * 6 5 4 31 31 H 1.09121 * 109.08144 * 168.76735 * 6 5 4 32 32 H 1.09659 * 108.93259 * 201.60131 * 7 6 5 33 33 H 1.08596 * 110.45360 * 320.69977 * 7 6 5 34 34 H 1.08999 * 109.47439 * 209.99891 * 9 8 7 35 35 H 1.09007 * 109.47113 * 330.00193 * 9 8 7 36 36 H 0.96999 * 120.00155 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.46958 * 299.99415 * 13 12 10 38 38 H 1.08990 * 109.47409 * 60.00129 * 13 12 10 39 39 H 0.97001 * 120.00410 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5255 0.0000 0.0000 3 1 1.8462 1.0652 0.0000 4 7 2.0804 -0.6171 1.1939 5 6 1.6058 -1.9394 1.5367 6 6 2.0111 -3.0331 0.5680 7 6 1.2559 -2.8934 -0.7545 8 7 1.9450 -1.9043 -1.5928 9 6 2.5228 -2.3500 -2.8743 10 6 1.4948 -2.2044 -3.9666 11 8 0.3915 -1.7728 -3.7072 12 7 1.8019 -2.5528 -5.2317 13 6 0.8027 -2.4107 -6.2937 14 6 1.3931 -2.8662 -7.6032 15 1 2.4111 -3.2253 -7.6408 16 6 0.6340 -2.8247 -8.7533 17 7 -0.6058 -2.3880 -8.7075 18 14 1.3661 -3.3887 -10.3767 19 1 1.7743 -4.8123 -10.2676 20 1 0.3532 -3.2448 -11.4531 21 1 2.5530 -2.5568 -10.7001 22 6 2.0751 -0.6254 -1.2544 23 8 2.6917 0.0986 -2.0306 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 3.0881 -0.5627 1.2153 28 1 2.0231 -2.2031 2.5201 29 1 0.5244 -1.9467 1.6464 30 1 3.0831 -2.9701 0.3820 31 1 1.7825 -4.0041 1.0103 32 1 1.2579 -3.8616 -1.2694 33 1 0.2258 -2.6008 -0.5742 34 1 3.3942 -1.7397 -3.1117 35 1 2.8221 -3.3951 -2.7940 36 1 2.6845 -2.8976 -5.4392 37 1 -0.0687 -3.0211 -6.0566 38 1 0.5035 -1.3657 -6.3736 39 1 -1.1398 -2.3584 -9.5167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063215121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:38 Heat of formation + Delta-G solvation = -70.852928 kcal Electronic energy + Delta-G solvation = -21204.798557 eV Core-core repulsion = 17954.170642 eV Total energy + Delta-G solvation = -3250.627915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.61328 -38.54434 -36.95988 -35.34781 -34.13002 -32.36630 -32.26882 -30.14187 -28.39108 -26.60935 -25.63704 -24.11654 -22.53437 -20.95591 -19.92380 -18.91969 -17.70436 -17.24993 -16.81532 -15.85170 -15.70274 -15.10184 -14.99434 -14.60533 -14.45724 -14.16149 -13.94910 -13.39404 -13.23359 -12.77689 -12.49644 -12.27413 -12.21323 -12.18027 -11.95210 -11.83217 -11.37230 -11.14003 -11.00878 -10.86052 -10.83204 -10.32455 -10.01789 -9.49176 -9.41638 -8.73430 -8.64457 -8.47079 -7.89248 -6.16480 -4.23705 2.52886 2.90117 3.25337 3.30094 3.31709 3.33933 3.88342 4.14043 4.31429 4.39386 4.49468 4.63835 4.73594 5.05449 5.12449 5.19423 5.21008 5.27735 5.30677 5.40795 5.51253 5.55717 5.61547 5.66722 5.77849 5.87305 6.11158 6.25186 6.88831 7.03572 7.29495 7.42219 7.45804 7.51670 7.65692 7.96708 8.17410 8.60915 8.77132 9.07977 9.42786 10.93729 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040897 B = 0.003772 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.486007 B = 7421.173048 C = 7537.892021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.101 3.899 3 H 0.110 0.890 4 N -0.694 5.694 5 C 0.067 3.933 6 C -0.176 4.176 7 C 0.110 3.890 8 N -0.575 5.575 9 C 0.086 3.914 10 C 0.486 3.514 11 O -0.548 6.548 12 N -0.711 5.711 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.064 3.936 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.481 3.519 23 O -0.559 6.559 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.355 0.645 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.390 0.610 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 -2.293 20.917 21.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.011 4.011 3 H 0.128 0.872 4 N -0.327 5.327 5 C -0.062 4.062 6 C -0.217 4.217 7 C -0.013 4.013 8 N -0.306 5.306 9 C -0.040 4.040 10 C 0.269 3.731 11 O -0.427 6.427 12 N -0.360 5.360 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.523 5.523 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.210 1.210 21 H -0.200 1.200 22 C 0.267 3.733 23 O -0.437 6.437 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.177 0.823 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.118 0.882 36 H 0.223 0.777 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.830 -1.314 20.901 21.492 hybrid contribution 1.184 -1.096 -1.807 2.422 sum 6.014 -2.409 19.094 20.163 Atomic orbital electron populations 1.21749 0.92048 1.03114 1.03314 1.21494 0.97066 0.99101 0.83479 0.87247 1.57085 1.14706 1.23698 1.37189 1.21240 1.01686 0.85599 0.97710 1.22526 1.01305 1.01151 0.96676 1.21790 0.96366 0.92474 0.90690 1.47297 1.55190 1.08839 1.19272 1.21663 0.97178 1.01690 0.83518 1.20789 0.89012 0.78995 0.84329 1.90641 1.23343 1.45963 1.82750 1.46423 1.17788 1.63818 1.07968 1.19085 0.87067 0.97519 0.83231 1.21192 0.99515 1.45093 0.92450 0.91919 1.24955 0.94762 0.94919 0.99363 1.69969 1.07943 1.45237 1.29180 0.86461 0.78812 0.79170 0.82382 1.20064 1.21049 1.20027 1.21993 0.80184 0.81657 0.89437 1.91115 1.42191 1.59168 1.51223 0.90712 0.91991 0.90913 0.82321 0.90928 0.90496 0.91242 0.89666 0.89757 0.90127 0.87053 0.88156 0.77720 0.95625 0.95610 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.86 36.93 0.33 -1.28 16 2 C 0.10 1.19 2.95 -69.97 -0.21 0.98 16 3 H 0.11 1.31 8.16 -50.63 -0.41 0.90 16 4 N -0.69 -6.13 6.14 -110.56 -0.68 -6.81 16 5 C 0.07 0.48 5.53 -5.75 -0.03 0.45 16 6 C -0.18 -1.28 5.81 -27.46 -0.16 -1.44 16 7 C 0.11 1.15 5.81 -3.90 -0.02 1.13 16 8 N -0.58 -8.11 2.05 -174.17 -0.36 -8.47 16 9 C 0.09 1.30 5.67 -4.66 -0.03 1.27 16 10 C 0.49 10.03 7.89 -10.99 -0.09 9.94 16 11 O -0.55 -13.54 16.43 5.56 0.09 -13.45 16 12 N -0.71 -15.38 5.55 -61.47 -0.34 -15.72 16 13 C 0.25 6.84 5.43 -5.19 -0.03 6.81 16 14 C -0.54 -15.01 9.28 -34.44 -0.32 -15.33 16 15 H 0.06 1.61 7.60 -52.48 -0.40 1.21 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.48 7.47 6.62 -11.88 -0.08 7.39 16 23 O -0.56 -11.12 16.09 4.21 0.07 -11.05 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.67 4.79 -51.93 -0.25 0.42 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.36 2.90 8.90 -39.28 -0.35 2.55 16 28 H 0.07 0.41 8.22 -51.34 -0.42 -0.01 16 29 H 0.08 0.55 6.88 -52.10 -0.36 0.19 16 30 H 0.07 0.54 8.10 -51.94 -0.42 0.12 16 31 H 0.08 0.46 8.15 -51.86 -0.42 0.03 16 32 H 0.08 0.82 7.74 -51.55 -0.40 0.43 16 33 H 0.08 0.89 5.80 -52.16 -0.30 0.58 16 34 H 0.11 1.71 7.13 -51.93 -0.37 1.34 16 35 H 0.10 1.13 7.85 -51.92 -0.41 0.72 16 36 H 0.39 7.16 8.32 -40.82 -0.34 6.82 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -35.63 318.21 -7.12 -42.75 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.68 Total: 6.02 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.73 Total: 11.62 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.64 Total: -56.72 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: 0.16 Total: -24.50 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -35.63 -7.12 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063215121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.108 kcal (2) G-P(sol) polarization free energy of solvation -35.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds