Wall clock time and date at job start Mon Mar 30 2020 05:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52550 * 1 3 3 H 1.11245 * 106.75287 * 2 1 4 4 N 1.45402 * 112.43535 * 117.33108 * 2 1 3 5 5 C 1.44613 * 117.22232 * 52.28825 * 4 2 1 6 6 C 1.51621 * 114.86040 * 67.49689 * 5 4 2 7 7 C 1.52936 * 110.77009 * 288.95296 * 6 5 4 8 8 N 1.46829 * 108.87613 * 82.82954 * 7 6 5 9 9 C 1.47468 * 118.45298 * 116.88481 * 8 7 6 10 10 C 1.50704 * 109.46994 * 89.99780 * 9 8 7 11 11 O 1.21276 * 119.99828 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99995 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99794 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47003 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00143 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00297 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99870 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00350 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47152 * 59.99949 * 18 16 14 20 20 H 1.48503 * 109.47098 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47079 * 299.99979 * 18 16 14 22 22 C 1.32926 * 123.27643 * 296.91959 * 8 7 6 23 23 O 1.22760 * 117.10365 * 178.85761 * 22 8 7 24 24 H 1.09002 * 109.47329 * 299.99834 * 1 2 3 25 25 H 1.09001 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47160 * 60.00053 * 1 2 3 27 27 H 1.00935 * 112.05893 * 183.56095 * 4 2 1 28 28 H 1.10030 * 107.85309 * 187.02088 * 5 4 2 29 29 H 1.08698 * 110.88934 * 303.37783 * 5 4 2 30 30 H 1.08985 * 109.28851 * 49.60864 * 6 5 4 31 31 H 1.09121 * 109.08144 * 168.76735 * 6 5 4 32 32 H 1.09659 * 108.93259 * 201.60131 * 7 6 5 33 33 H 1.08596 * 110.45360 * 320.69977 * 7 6 5 34 34 H 1.08999 * 109.47439 * 209.99891 * 9 8 7 35 35 H 1.09007 * 109.47113 * 330.00193 * 9 8 7 36 36 H 0.96999 * 120.00155 * 0.02562 * 12 10 9 37 37 H 1.08997 * 109.46958 * 299.99415 * 13 12 10 38 38 H 1.08990 * 109.47409 * 60.00129 * 13 12 10 39 39 H 0.97001 * 120.00410 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5255 0.0000 0.0000 3 1 1.8462 1.0652 0.0000 4 7 2.0804 -0.6171 1.1939 5 6 1.6058 -1.9394 1.5367 6 6 2.0111 -3.0331 0.5680 7 6 1.2559 -2.8934 -0.7545 8 7 1.9450 -1.9043 -1.5928 9 6 2.5228 -2.3500 -2.8743 10 6 1.4948 -2.2044 -3.9666 11 8 0.3915 -1.7728 -3.7072 12 7 1.8019 -2.5528 -5.2317 13 6 0.8027 -2.4107 -6.2937 14 6 1.3931 -2.8662 -7.6032 15 1 2.4111 -3.2253 -7.6408 16 6 0.6340 -2.8247 -8.7533 17 7 -0.6058 -2.3880 -8.7075 18 14 1.3661 -3.3887 -10.3767 19 1 1.7743 -4.8123 -10.2676 20 1 0.3532 -3.2448 -11.4531 21 1 2.5530 -2.5568 -10.7001 22 6 2.0751 -0.6254 -1.2544 23 8 2.6917 0.0986 -2.0306 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 3.0881 -0.5627 1.2153 28 1 2.0231 -2.2031 2.5201 29 1 0.5244 -1.9467 1.6464 30 1 3.0831 -2.9701 0.3820 31 1 1.7825 -4.0041 1.0103 32 1 1.2579 -3.8616 -1.2694 33 1 0.2258 -2.6008 -0.5742 34 1 3.3942 -1.7397 -3.1117 35 1 2.8221 -3.3951 -2.7940 36 1 2.6845 -2.8976 -5.4392 37 1 -0.0687 -3.0211 -6.0566 38 1 0.5035 -1.3657 -6.3736 39 1 -1.1398 -2.3584 -9.5167 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063215121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:37 Heat of formation + Delta-G solvation = -100.234885 kcal Electronic energy + Delta-G solvation = -21206.072654 eV Core-core repulsion = 17954.170642 eV Total energy + Delta-G solvation = -3251.902012 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.77374 -40.18932 -37.96324 -36.53456 -36.04219 -34.40655 -33.18380 -31.20817 -29.89963 -28.27196 -26.50559 -25.27551 -24.39623 -21.92997 -21.44100 -20.12653 -19.02559 -18.61416 -17.93745 -17.69002 -16.96317 -16.65822 -16.26259 -16.05386 -15.82338 -15.57165 -14.89694 -14.66786 -14.43354 -14.12158 -14.01496 -13.99046 -13.31497 -13.16741 -13.09796 -13.00540 -12.97712 -12.69787 -12.54945 -12.26734 -11.80758 -11.65690 -11.55485 -11.17934 -11.06790 -10.82662 -9.90498 -9.87153 -9.38573 -8.32166 -6.49738 1.32135 1.41234 1.45605 1.53873 1.66468 1.81365 2.31985 2.61521 3.02447 3.13304 3.35330 3.76069 3.83499 3.90804 3.99191 4.10416 4.25998 4.32738 4.43807 4.51870 4.64167 4.70870 4.76434 4.89829 5.02806 5.07513 5.12746 5.17621 5.22330 5.34715 5.43030 5.63627 5.80103 6.12625 6.27368 6.45714 6.60444 6.80613 7.01328 7.19326 7.40742 8.79967 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040897 B = 0.003772 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.486007 B = 7421.173048 C = 7537.892021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.111 3.889 3 H 0.102 0.898 4 N -0.685 5.685 5 C 0.060 3.940 6 C -0.163 4.163 7 C 0.098 3.902 8 N -0.575 5.575 9 C 0.096 3.904 10 C 0.480 3.520 11 O -0.595 6.595 12 N -0.706 5.706 13 C 0.269 3.731 14 C -0.559 4.559 15 H 0.085 0.915 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.472 3.528 23 O -0.613 6.613 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.361 0.639 28 H 0.099 0.901 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.409 0.591 37 H -0.009 1.009 38 H -0.022 1.022 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.806 -4.276 22.190 23.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 H 0.120 0.880 4 N -0.318 5.318 5 C -0.069 4.069 6 C -0.203 4.203 7 C -0.023 4.023 8 N -0.304 5.304 9 C -0.030 4.030 10 C 0.266 3.734 11 O -0.476 6.476 12 N -0.356 5.356 13 C 0.146 3.854 14 C -0.597 4.597 15 H 0.103 0.897 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.810 3.190 19 H -0.183 1.183 20 H -0.210 1.210 21 H -0.189 1.189 22 C 0.260 3.740 23 O -0.495 6.495 24 H 0.117 0.883 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.183 0.817 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.130 0.870 35 H 0.168 0.832 36 H 0.245 0.755 37 H 0.009 0.991 38 H -0.004 1.004 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.702 -3.346 22.238 23.466 hybrid contribution 0.549 -0.476 -2.125 2.245 sum 7.251 -3.822 20.114 21.720 Atomic orbital electron populations 1.21706 0.91668 1.03300 1.03055 1.21382 0.97164 0.98741 0.82977 0.88011 1.57125 1.15095 1.24914 1.34659 1.21408 1.02155 0.84533 0.98800 1.22439 1.00625 1.02614 0.94595 1.22130 0.96321 0.91749 0.92096 1.47557 1.54671 1.09247 1.18893 1.21667 0.94732 1.04641 0.81966 1.21884 0.89519 0.77093 0.84865 1.90616 1.25854 1.47655 1.83478 1.46165 1.17638 1.64289 1.07524 1.18507 0.87534 0.93869 0.85450 1.21595 1.00556 1.45028 0.92487 0.89687 1.26104 0.94990 0.94588 1.03936 1.70139 1.09831 1.46507 1.30541 0.85174 0.77941 0.79407 0.76494 1.18267 1.21001 1.18861 1.22882 0.79278 0.81752 0.90116 1.91080 1.44765 1.60528 1.53161 0.88318 0.91595 0.93732 0.81689 0.88302 0.90222 0.91202 0.86733 0.88684 0.90856 0.86990 0.83212 0.75493 0.99142 1.00367 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.86 71.83 0.64 -2.44 16 2 C 0.11 2.55 2.95 44.26 0.13 2.68 16 3 H 0.10 2.48 8.16 -1.17 -0.01 2.47 16 4 N -0.68 -10.63 6.14 -503.71 -3.09 -13.72 16 5 C 0.06 0.66 5.53 86.28 0.48 1.13 16 6 C -0.16 -1.78 5.81 30.12 0.18 -1.61 16 7 C 0.10 1.86 5.81 86.30 0.50 2.36 16 8 N -0.57 -15.68 2.05 -823.74 -1.69 -17.37 16 9 C 0.10 2.79 5.67 85.45 0.48 3.28 16 10 C 0.48 20.19 7.89 87.66 0.69 20.88 16 11 O -0.59 -30.67 16.43 -3.02 -0.05 -30.72 16 12 N -0.71 -31.03 5.55 -466.80 -2.59 -33.62 16 13 C 0.27 15.30 5.43 85.63 0.46 15.77 16 14 C -0.56 -31.09 9.28 25.60 0.24 -30.85 16 15 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 16 C 0.00 0.19 5.46 84.65 0.46 0.66 16 17 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 18 Si 0.99 42.83 29.54 68.60 2.03 44.86 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 22 C 0.47 14.74 6.62 87.90 0.58 15.32 16 23 O -0.61 -25.18 16.09 -7.86 -0.13 -25.31 16 24 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.07 1.38 4.79 -2.39 -0.01 1.37 16 26 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.36 5.10 8.90 -89.67 -0.80 4.30 16 28 H 0.10 0.68 8.22 -1.84 -0.02 0.66 16 29 H 0.08 0.88 6.88 -2.55 -0.02 0.86 16 30 H 0.07 0.82 8.10 -2.40 -0.02 0.80 16 31 H 0.11 0.68 8.15 -2.32 -0.02 0.66 16 32 H 0.09 1.60 7.74 -2.04 -0.02 1.58 16 33 H 0.07 1.52 5.80 -2.60 -0.02 1.50 16 34 H 0.11 3.34 7.13 -2.39 -0.02 3.33 16 35 H 0.15 2.86 7.85 -2.38 -0.02 2.84 16 36 H 0.41 14.70 8.32 -92.71 -0.77 13.92 16 37 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 39 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -82.30 318.21 -0.87 -83.17 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -0.48 Total: 22.49 kcal Atomic # 6 Polarization: 22.33 SS G_CDS: 4.84 Total: 27.17 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -7.09 Total: -121.67 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.18 Total: -56.02 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -82.30 -0.87 -83.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063215121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.065 kcal (2) G-P(sol) polarization free energy of solvation -82.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds