Wall clock time and date at job start Mon Mar 30 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86794 * 120.00355 * 2 1 4 4 H 1.48493 * 109.47199 * 269.99601 * 3 2 1 5 5 H 1.48500 * 109.47123 * 29.99994 * 3 2 1 6 6 H 1.48507 * 109.47272 * 149.99607 * 3 2 1 7 7 C 1.38951 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00109 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00080 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00246 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47450 * 179.97438 * 12 10 9 14 14 C 1.46849 * 110.99696 * 70.18985 * 13 12 10 15 15 C 1.53044 * 109.52173 * 185.84043 * 14 13 12 16 16 C 1.53113 * 109.27959 * 300.82548 * 15 14 13 17 17 C 1.53118 * 109.16336 * 57.65091 * 16 15 14 18 18 C 1.46843 * 111.00309 * 194.40227 * 13 12 10 19 19 H 1.09001 * 109.45921 * 294.17529 * 18 13 12 20 20 C 1.52998 * 109.46252 * 54.14370 * 18 13 12 21 21 C 1.50697 * 109.47332 * 184.36434 * 20 18 13 22 22 N 1.34771 * 120.00343 * 186.63006 * 21 20 18 23 23 O 1.21288 * 119.99908 * 6.63094 * 21 20 18 24 24 H 0.97008 * 119.99522 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00167 * 359.71560 * 9 7 2 26 26 H 1.09002 * 109.47235 * 300.00136 * 12 10 9 27 27 H 1.09002 * 109.47063 * 59.99979 * 12 10 9 28 28 H 1.08996 * 109.46470 * 305.85903 * 14 13 12 29 29 H 1.08998 * 109.46376 * 65.83935 * 14 13 12 30 30 H 1.09002 * 109.49949 * 60.76389 * 15 14 13 31 31 H 1.08993 * 109.50139 * 180.84128 * 15 14 13 32 32 H 1.08991 * 109.52530 * 177.56245 * 16 15 14 33 33 H 1.09007 * 109.51798 * 297.68392 * 16 15 14 34 34 H 1.09000 * 109.50092 * 62.28946 * 17 16 15 35 35 H 1.09000 * 109.50369 * 182.36849 * 17 16 15 36 36 H 1.09005 * 109.47398 * 304.36666 * 20 18 13 37 37 H 1.08998 * 109.47357 * 64.36520 * 20 18 13 38 38 H 0.97003 * 120.00232 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00081 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9796 0.0004 14 6 2.8940 -6.0777 1.2897 15 6 3.9790 -7.1537 1.2046 16 6 3.3334 -8.4956 0.8484 17 6 2.5746 -8.3531 -0.4739 18 6 1.5304 -7.2424 -0.3401 19 1 0.8223 -7.5025 0.4468 20 6 0.7832 -7.0828 -1.6656 21 6 0.0110 -8.3426 -1.9619 22 7 -0.6183 -8.4847 -3.1451 23 8 -0.0441 -9.2286 -1.1355 24 1 -0.4850 0.8402 -0.0004 25 1 0.3532 -2.3906 0.0043 26 1 0.6171 -4.9205 0.8914 27 1 0.6165 -4.9209 -0.8886 28 1 3.3522 -5.1181 1.5290 29 1 2.1796 -6.3435 2.0688 30 1 4.7015 -6.8818 0.4350 31 1 4.4855 -7.2366 2.1661 32 1 4.1073 -9.2560 0.7442 33 1 2.6403 -8.7871 1.6377 34 1 3.2750 -8.1002 -1.2698 35 1 2.0778 -9.2938 -0.7115 36 1 0.0932 -6.2419 -1.5949 37 1 1.4993 -6.8988 -2.4665 38 1 -0.5739 -7.7763 -3.8063 39 1 -1.1150 -9.2958 -3.3360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:02 Heat of formation + Delta-G solvation = -79.256004 kcal Electronic energy + Delta-G solvation = -21188.892596 eV Core-core repulsion = 17937.900297 eV Total energy + Delta-G solvation = -3250.992300 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.12989 -38.75111 -37.45031 -33.99130 -33.81500 -33.23076 -32.07406 -31.17774 -27.88528 -27.13249 -24.56510 -22.88543 -22.15188 -20.28072 -19.47860 -19.08141 -17.83062 -17.42512 -16.99902 -15.88854 -15.39954 -15.24546 -14.85341 -14.52558 -14.30134 -13.90345 -13.73820 -13.43378 -13.24151 -12.83614 -12.64815 -12.18102 -12.06752 -11.64236 -11.46311 -11.30581 -11.00741 -10.83105 -10.51612 -10.38486 -10.27270 -10.20824 -10.03915 -9.87194 -9.74014 -9.44609 -8.39658 -7.94354 -7.77152 -6.39921 -3.80404 2.54670 3.18807 3.27313 3.32650 3.35941 3.93280 4.06878 4.28330 4.71309 4.86428 4.96779 5.11148 5.18082 5.28309 5.33911 5.38440 5.50781 5.67778 5.77365 5.81521 5.88167 5.97665 6.02902 6.13661 6.19602 6.26875 6.33531 6.36088 6.56138 6.61659 6.65732 7.16170 7.39066 7.50587 7.57049 8.09050 8.14770 8.64751 9.20720 9.57409 10.09820 10.77993 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.004586 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.307025 B = 6104.048668 C = 7040.176412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.297 4.297 8 H 0.103 0.897 9 N -0.567 5.567 10 C 0.446 3.554 11 O -0.575 6.575 12 C 0.037 3.963 13 N -0.510 5.510 14 C 0.059 3.941 15 C -0.114 4.114 16 C -0.118 4.118 17 C -0.112 4.112 18 C 0.102 3.898 19 H 0.047 0.953 20 C -0.147 4.147 21 C 0.521 3.479 22 N -0.859 5.859 23 O -0.543 6.543 24 H 0.271 0.729 25 H 0.391 0.609 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.022 0.978 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 -14.624 -4.032 15.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.180 4.180 3 Si 0.756 3.244 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.427 4.427 8 H 0.120 0.880 9 N -0.204 5.204 10 C 0.231 3.769 11 O -0.458 6.458 12 C -0.094 4.094 13 N -0.235 5.235 14 C -0.068 4.068 15 C -0.152 4.152 16 C -0.156 4.156 17 C -0.150 4.150 18 C -0.007 4.007 19 H 0.065 0.935 20 C -0.187 4.187 21 C 0.306 3.694 22 N -0.423 5.423 23 O -0.420 6.420 24 H 0.080 0.920 25 H 0.224 0.776 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.114 0.886 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.231 0.769 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -0.418 -14.817 -3.720 15.282 hybrid contribution -1.184 0.834 0.080 1.451 sum -1.603 -13.983 -3.640 14.537 Atomic orbital electron populations 1.69614 1.05925 1.28057 1.50917 1.25238 0.95610 0.99647 0.97466 0.85873 0.79238 0.80915 0.78356 1.20449 1.20998 1.19448 1.19690 0.93334 0.82234 1.47398 0.87956 1.41875 1.09128 1.04588 1.64835 1.19754 0.88433 0.84464 0.84239 1.90504 1.13659 1.86924 1.54737 1.22001 0.94311 0.91596 1.01537 1.61501 1.28010 1.01533 1.32424 1.22147 0.95518 1.00991 0.88160 1.21563 0.98139 0.94038 1.01438 1.21555 0.99190 0.97384 0.97458 1.21676 0.97310 0.97948 0.98024 1.21289 0.94591 0.90267 0.94569 0.93505 1.21904 1.00243 0.95718 1.00806 1.20714 0.78439 0.88940 0.81282 1.43919 1.56113 1.23618 1.18605 1.90721 1.61544 1.43145 1.46560 0.91951 0.77589 0.93460 0.89190 0.88553 0.96009 0.90955 0.92055 0.92276 0.92538 0.91616 0.90550 0.87980 0.87803 0.76914 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.20 9.68 -14.93 -0.14 -8.34 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.57 -14.19 5.29 -10.96 -0.06 -14.25 16 10 C 0.45 10.38 7.46 -10.99 -0.08 10.30 16 11 O -0.57 -15.31 14.28 5.54 0.08 -15.23 16 12 C 0.04 0.65 5.25 -4.98 -0.03 0.63 16 13 N -0.51 -8.60 4.15 -228.12 -0.95 -9.54 16 14 C 0.06 1.00 5.11 -3.83 -0.02 0.98 16 15 C -0.11 -1.63 6.09 -26.65 -0.16 -1.80 16 16 C -0.12 -1.53 6.00 -26.61 -0.16 -1.69 16 17 C -0.11 -1.51 5.10 -26.65 -0.14 -1.64 16 18 C 0.10 1.45 1.56 -67.73 -0.11 1.35 16 19 H 0.05 0.72 7.88 -51.93 -0.41 0.32 16 20 C -0.15 -1.71 4.96 -27.89 -0.14 -1.85 16 21 C 0.52 5.97 7.70 -10.99 -0.08 5.88 16 22 N -0.86 -6.36 8.87 31.22 0.28 -6.08 16 23 O -0.54 -8.20 15.03 5.55 0.08 -8.12 16 24 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 26 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.09 1.38 5.37 -51.93 -0.28 1.10 16 28 H 0.10 1.92 6.19 -51.93 -0.32 1.60 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 36 H 0.10 1.12 5.79 -51.93 -0.30 0.82 16 37 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.40 1.95 8.83 -40.82 -0.36 1.59 16 39 H 0.40 2.51 8.93 -40.82 -0.36 2.14 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -32.85 313.54 -6.86 -39.71 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -5.57 Total: 12.25 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.15 Total: 4.29 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.00 Total: -53.55 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: 0.16 Total: -23.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.85 -6.86 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.544 kcal (2) G-P(sol) polarization free energy of solvation -32.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds