Wall clock time and date at job start Mon Mar 30 2020 05:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86794 * 120.00355 * 2 1 4 4 H 1.48493 * 109.47199 * 269.99601 * 3 2 1 5 5 H 1.48500 * 109.47123 * 29.99994 * 3 2 1 6 6 H 1.48507 * 109.47272 * 149.99607 * 3 2 1 7 7 C 1.38951 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99967 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00109 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00080 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00246 * 179.97438 * 10 9 7 13 13 N 1.46899 * 109.47450 * 179.97438 * 12 10 9 14 14 C 1.46849 * 110.99696 * 70.18985 * 13 12 10 15 15 C 1.53044 * 109.52173 * 185.84043 * 14 13 12 16 16 C 1.53113 * 109.27959 * 300.82548 * 15 14 13 17 17 C 1.53118 * 109.16336 * 57.65091 * 16 15 14 18 18 C 1.46843 * 111.00309 * 194.40227 * 13 12 10 19 19 H 1.09001 * 109.45921 * 294.17529 * 18 13 12 20 20 C 1.52998 * 109.46252 * 54.14370 * 18 13 12 21 21 C 1.50697 * 109.47332 * 184.36434 * 20 18 13 22 22 N 1.34771 * 120.00343 * 186.63006 * 21 20 18 23 23 O 1.21288 * 119.99908 * 6.63094 * 21 20 18 24 24 H 0.97008 * 119.99522 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00167 * 359.71560 * 9 7 2 26 26 H 1.09002 * 109.47235 * 300.00136 * 12 10 9 27 27 H 1.09002 * 109.47063 * 59.99979 * 12 10 9 28 28 H 1.08996 * 109.46470 * 305.85903 * 14 13 12 29 29 H 1.08998 * 109.46376 * 65.83935 * 14 13 12 30 30 H 1.09002 * 109.49949 * 60.76389 * 15 14 13 31 31 H 1.08993 * 109.50139 * 180.84128 * 15 14 13 32 32 H 1.08991 * 109.52530 * 177.56245 * 16 15 14 33 33 H 1.09007 * 109.51798 * 297.68392 * 16 15 14 34 34 H 1.09000 * 109.50092 * 62.28946 * 17 16 15 35 35 H 1.09000 * 109.50369 * 182.36849 * 17 16 15 36 36 H 1.09005 * 109.47398 * 304.36666 * 20 18 13 37 37 H 1.08998 * 109.47357 * 64.36520 * 20 18 13 38 38 H 0.97003 * 120.00232 * 0.02562 * 22 21 20 39 39 H 0.97001 * 120.00081 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0462 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5457 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1980 -5.9796 0.0004 14 6 2.8940 -6.0777 1.2897 15 6 3.9790 -7.1537 1.2046 16 6 3.3334 -8.4956 0.8484 17 6 2.5746 -8.3531 -0.4739 18 6 1.5304 -7.2424 -0.3401 19 1 0.8223 -7.5025 0.4468 20 6 0.7832 -7.0828 -1.6656 21 6 0.0110 -8.3426 -1.9619 22 7 -0.6183 -8.4847 -3.1451 23 8 -0.0441 -9.2286 -1.1355 24 1 -0.4850 0.8402 -0.0004 25 1 0.3532 -2.3906 0.0043 26 1 0.6171 -4.9205 0.8914 27 1 0.6165 -4.9209 -0.8886 28 1 3.3522 -5.1181 1.5290 29 1 2.1796 -6.3435 2.0688 30 1 4.7015 -6.8818 0.4350 31 1 4.4855 -7.2366 2.1661 32 1 4.1073 -9.2560 0.7442 33 1 2.6403 -8.7871 1.6377 34 1 3.2750 -8.1002 -1.2698 35 1 2.0778 -9.2938 -0.7115 36 1 0.0932 -6.2419 -1.5949 37 1 1.4993 -6.8988 -2.4665 38 1 -0.5739 -7.7763 -3.8063 39 1 -1.1150 -9.2958 -3.3360 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:01 Heat of formation + Delta-G solvation = -106.005342 kcal Electronic energy + Delta-G solvation = -21190.052535 eV Core-core repulsion = 17937.900297 eV Total energy + Delta-G solvation = -3252.152238 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.24525 -40.14818 -38.98079 -35.93243 -34.74862 -34.39754 -33.23570 -33.19146 -29.17122 -28.47039 -26.40331 -24.17749 -23.27386 -21.31019 -20.92328 -20.54124 -19.81997 -18.27135 -18.02635 -17.45640 -16.70992 -16.50341 -16.23888 -16.16393 -15.61894 -15.48608 -15.10789 -14.81091 -14.55488 -14.01016 -13.90478 -13.71162 -13.41557 -13.30234 -12.95929 -12.81265 -12.43653 -12.38432 -12.11115 -11.98216 -11.62049 -11.54180 -11.33280 -11.13251 -10.86865 -10.55681 -10.23030 -9.96138 -9.17888 -8.43313 -5.91338 1.39871 1.43604 1.55924 1.66769 2.09857 2.29297 2.47686 2.93302 3.23301 3.43651 3.72609 3.83226 3.99825 4.08046 4.23797 4.31846 4.33675 4.40210 4.48585 4.57039 4.58353 4.71410 4.91409 4.93571 4.99247 5.06460 5.12466 5.25795 5.33363 5.44344 5.50299 5.93758 5.96109 6.12606 6.25357 6.49477 6.65077 7.17219 7.39417 7.61092 8.17420 8.74165 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023283 B = 0.004586 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.307025 B = 6104.048668 C = 7040.176412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.329 4.329 8 H 0.078 0.922 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.612 6.612 12 C 0.047 3.953 13 N -0.520 5.520 14 C 0.058 3.942 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.108 4.108 18 C 0.103 3.897 19 H 0.037 0.963 20 C -0.144 4.144 21 C 0.523 3.477 22 N -0.837 5.837 23 O -0.583 6.583 24 H 0.277 0.723 25 H 0.395 0.605 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.417 0.583 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -15.191 -4.892 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.459 4.459 8 H 0.096 0.904 9 N -0.214 5.214 10 C 0.232 3.768 11 O -0.497 6.497 12 C -0.084 4.084 13 N -0.245 5.245 14 C -0.070 4.070 15 C -0.146 4.146 16 C -0.152 4.152 17 C -0.145 4.145 18 C -0.006 4.006 19 H 0.055 0.945 20 C -0.184 4.184 21 C 0.308 3.692 22 N -0.401 5.401 23 O -0.463 6.463 24 H 0.086 0.914 25 H 0.229 0.771 26 H 0.078 0.922 27 H 0.137 0.863 28 H 0.077 0.923 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.249 0.751 39 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -1.113 -15.389 -4.627 16.108 hybrid contribution -0.984 0.973 0.324 1.421 sum -2.096 -14.416 -4.303 15.190 Atomic orbital electron populations 1.69673 1.06785 1.29153 1.50677 1.25981 0.96492 1.02244 0.96457 0.84960 0.77859 0.77086 0.78636 1.19591 1.19736 1.19907 1.19637 0.92640 0.83987 1.49640 0.90376 1.41926 1.09248 1.04640 1.65552 1.20701 0.88277 0.85736 0.82050 1.90481 1.15647 1.87753 1.55844 1.21904 0.93999 0.88962 1.03520 1.61489 1.28247 1.02410 1.32395 1.22088 0.96311 0.99961 0.88628 1.21516 0.97134 0.94017 1.01909 1.21538 0.99612 0.96801 0.97204 1.21641 0.97054 0.97560 0.98284 1.21325 0.94656 0.88944 0.95625 0.94520 1.21863 1.00510 0.96341 0.99709 1.20603 0.78477 0.88229 0.81843 1.43719 1.54554 1.24348 1.17521 1.90713 1.63243 1.44304 1.48086 0.91408 0.77100 0.92229 0.86258 0.92291 0.95365 0.92233 0.90576 0.90352 0.92380 0.91655 0.90453 0.87089 0.86705 0.75149 0.76069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.33 -18.55 9.68 84.04 0.81 -17.74 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.58 -29.23 5.29 -306.98 -1.62 -30.86 16 10 C 0.45 21.00 7.46 87.66 0.65 21.66 16 11 O -0.61 -33.54 14.28 -3.08 -0.04 -33.58 16 12 C 0.05 1.64 5.25 85.56 0.45 2.08 16 13 N -0.52 -17.22 4.15 -875.65 -3.64 -20.85 16 14 C 0.06 1.96 5.11 86.33 0.44 2.41 16 15 C -0.11 -3.03 6.09 30.65 0.19 -2.84 16 16 C -0.11 -2.76 6.00 30.67 0.18 -2.58 16 17 C -0.11 -2.74 5.10 30.65 0.16 -2.58 16 18 C 0.10 2.79 1.56 44.94 0.07 2.86 16 19 H 0.04 1.09 7.88 -2.39 -0.02 1.07 16 20 C -0.14 -3.06 4.96 29.85 0.15 -2.91 16 21 C 0.52 10.88 7.70 87.66 0.68 11.56 16 22 N -0.84 -10.15 8.87 -173.54 -1.54 -11.69 16 23 O -0.58 -16.76 15.03 -3.06 -0.05 -16.81 16 24 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 25 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 26 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 27 H 0.12 3.43 5.37 -2.39 -0.01 3.42 16 28 H 0.06 2.44 6.19 -2.39 -0.01 2.43 16 29 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 2.01 6.16 -2.39 -0.01 1.99 16 36 H 0.11 2.13 5.79 -2.38 -0.01 2.12 16 37 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.42 2.75 8.83 -92.71 -0.82 1.94 16 39 H 0.41 4.07 8.93 -92.71 -0.83 3.24 16 Total: -1.00 -71.44 313.54 -1.61 -73.05 By element: Atomic # 1 Polarization: 34.60 SS G_CDS: -1.28 Total: 33.32 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 4.25 Total: 11.73 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -6.52 Total: -112.44 kcal Atomic # 8 Polarization: -50.30 SS G_CDS: -0.09 Total: -50.39 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.44 -1.61 -73.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.953 kcal (2) G-P(sol) polarization free energy of solvation -71.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds