Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46668 * 2 1 4 4 C 1.53039 * 109.45818 * 240.02483 * 2 1 3 5 5 C 1.53126 * 109.28009 * 180.80880 * 4 2 1 6 6 C 1.53099 * 109.15071 * 57.65227 * 5 4 2 7 7 H 1.09007 * 109.48839 * 182.39531 * 6 5 4 8 8 C 1.50702 * 109.50482 * 62.29310 * 6 5 4 9 9 N 1.34768 * 120.00357 * 60.17628 * 8 6 5 10 10 O 1.21281 * 120.00059 * 240.17637 * 8 6 5 11 11 C 1.53034 * 109.29509 * 302.33888 * 6 5 4 12 12 N 1.46847 * 109.51345 * 59.18740 * 11 6 5 13 13 C 1.46898 * 110.99897 * 174.16738 * 12 11 6 14 14 C 1.50703 * 109.47292 * 66.04550 * 13 12 11 15 15 O 1.21297 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00340 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00345 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99664 * 359.97438 * 17 16 14 19 19 C 1.38943 * 120.00257 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46740 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47223 * 119.99601 * 21 19 17 24 24 H 1.48492 * 109.47385 * 239.99809 * 21 19 17 25 25 H 1.08988 * 109.47518 * 300.02568 * 1 2 3 26 26 H 1.09003 * 109.46970 * 60.02612 * 1 2 3 27 27 H 1.09007 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.50227 * 300.74706 * 4 2 1 29 29 H 1.09000 * 109.50337 * 60.86930 * 4 2 1 30 30 H 1.08990 * 109.52264 * 177.55890 * 5 4 2 31 31 H 1.09002 * 109.52383 * 297.68676 * 5 4 2 32 32 H 0.97002 * 119.99881 * 0.02562 * 9 8 6 33 33 H 0.97008 * 120.00338 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46271 * 299.17460 * 11 6 5 35 35 H 1.08994 * 109.46242 * 179.19760 * 11 6 5 36 36 H 1.09002 * 109.47176 * 186.04194 * 13 12 11 37 37 H 1.08995 * 109.47485 * 306.04221 * 13 12 11 38 38 H 0.97001 * 119.99701 * 359.97438 * 16 14 13 39 39 H 0.97000 * 119.99776 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5709 -0.7363 -1.2357 6 6 4.0544 -1.4190 0.0465 7 1 5.1436 -1.3951 0.0827 8 6 3.5810 -2.8496 0.0641 9 7 3.9587 -3.6965 -0.9138 10 8 2.8601 -3.2389 0.9584 11 6 3.4864 -0.6779 1.2590 12 7 2.0192 -0.6918 1.1994 13 6 1.4374 -0.1106 2.4166 14 6 1.7795 1.3555 2.4863 15 8 2.4424 1.8660 1.6082 16 7 1.3480 2.0996 3.5239 17 6 1.6588 3.4334 3.5871 18 1 2.2497 3.8877 2.8056 19 6 1.2144 4.2003 4.6570 20 7 0.4957 3.6474 5.6083 21 14 1.6384 6.0175 4.7435 22 1 2.4508 6.3931 3.5586 23 1 0.3875 6.8175 4.7591 24 1 2.4134 6.2867 5.9812 25 1 -0.3634 0.5142 0.8896 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.6657 -1.7447 -1.2576 29 1 1.6894 -0.1982 -2.1399 30 1 3.9377 -1.2865 -2.1020 31 1 3.9457 0.2867 -1.2685 32 1 4.5356 -3.3853 -1.6289 33 1 3.6543 -4.6175 -0.9023 34 1 3.8404 0.3530 1.2532 35 1 3.8174 -1.1703 2.1734 36 1 0.3542 -0.2302 2.3944 37 1 1.8413 -0.6199 3.2915 38 1 0.8169 1.6916 4.2256 39 1 0.1852 4.1829 6.3550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066665272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = -73.086981 kcal Electronic energy + Delta-G solvation = -21882.928885 eV Core-core repulsion = 18632.204094 eV Total energy + Delta-G solvation = -3250.724791 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26813 -38.67202 -36.86941 -34.14618 -33.65885 -32.64403 -31.97322 -31.23261 -27.56080 -26.72762 -24.53788 -22.93653 -22.45099 -20.56981 -19.24708 -18.88404 -17.77636 -17.10454 -16.25195 -15.81888 -15.68268 -15.04399 -14.56396 -14.32807 -14.21469 -13.90540 -13.60753 -13.33381 -12.91401 -12.55938 -12.29269 -11.75136 -11.71415 -11.56324 -11.49159 -11.28401 -11.19578 -10.94215 -10.41079 -10.30451 -10.22954 -10.14245 -9.88139 -9.51430 -9.50148 -9.41497 -9.03418 -7.95938 -7.17321 -6.41904 -3.83423 2.96157 3.14534 3.25539 3.32173 3.69181 3.88659 4.17026 4.43255 4.84498 4.98680 5.01886 5.13200 5.22718 5.27876 5.51344 5.63468 5.75218 5.86496 5.90543 5.99773 6.08040 6.13152 6.23509 6.24458 6.28926 6.34116 6.41443 6.53137 6.60174 6.89981 6.95655 7.45149 7.53935 7.61005 7.72926 8.05548 8.53709 8.60341 9.16520 9.54203 10.04878 10.74540 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.004647 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.326959 B = 6023.534190 C = 6071.183125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.092 0.908 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.104 4.104 7 H 0.093 0.907 8 C 0.523 3.477 9 N -0.868 5.868 10 O -0.512 6.512 11 C 0.064 3.936 12 N -0.491 5.491 13 C 0.042 3.958 14 C 0.409 3.591 15 O -0.595 6.595 16 N -0.558 5.558 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.899 5.899 21 Si 0.928 3.072 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.395 0.605 33 H 0.394 0.606 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.086 0.914 38 H 0.393 0.607 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -11.017 -12.134 17.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.053 4.053 3 H 0.110 0.890 4 C -0.147 4.147 5 C -0.147 4.147 6 C -0.126 4.126 7 H 0.111 0.889 8 C 0.308 3.692 9 N -0.433 5.433 10 O -0.385 6.385 11 C -0.064 4.064 12 N -0.214 5.214 13 C -0.090 4.090 14 C 0.195 3.805 15 O -0.483 6.483 16 N -0.194 5.194 17 C -0.430 4.430 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.540 5.540 21 Si 0.755 3.245 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.223 0.777 33 H 0.224 0.776 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.226 0.774 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.673 -11.148 -11.877 16.947 hybrid contribution 0.262 1.245 0.280 1.303 sum 4.935 -9.903 -11.597 16.029 Atomic orbital electron populations 1.21832 0.95444 1.01251 1.01453 1.22001 0.94709 0.99293 0.89290 0.89016 1.21625 0.94519 1.00871 0.97725 1.21543 0.96965 1.01180 0.94966 1.21454 1.00829 0.92053 0.98297 0.88892 1.20549 0.79789 0.87700 0.81206 1.43983 1.55540 1.14512 1.29294 1.90757 1.34703 1.77600 1.35405 1.21957 0.88811 0.99892 0.95780 1.62380 1.06403 1.51766 1.00895 1.22063 1.01202 0.91606 0.94121 1.21237 0.85527 0.89334 0.84393 1.90359 1.44245 1.73865 1.39796 1.42086 1.46687 1.09518 1.21069 1.19750 1.31372 0.84334 1.07592 0.87977 1.25277 0.96633 1.00544 0.95422 1.69627 1.36018 1.37141 1.11172 0.85822 0.78217 0.82119 0.78302 1.19297 1.20744 1.20739 0.92482 0.93027 0.92792 0.92117 0.91897 0.92193 0.90617 0.77747 0.77563 0.90935 0.91291 0.89150 0.89587 0.77388 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 8.76 37.15 0.33 -1.98 16 2 C 0.06 0.94 1.95 -67.72 -0.13 0.81 16 3 H 0.09 1.89 5.36 -51.92 -0.28 1.61 16 4 C -0.11 -1.51 5.12 -26.65 -0.14 -1.64 16 5 C -0.11 -1.29 5.43 -26.62 -0.14 -1.44 16 6 C -0.10 -1.36 3.02 -91.70 -0.28 -1.64 16 7 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.52 7.05 6.14 -10.99 -0.07 6.99 16 9 N -0.87 -7.66 8.76 31.22 0.27 -7.39 16 10 O -0.51 -9.19 16.07 5.56 0.09 -9.10 16 11 C 0.06 1.10 4.08 -3.84 -0.02 1.08 16 12 N -0.49 -8.83 3.55 -228.12 -0.81 -9.64 16 13 C 0.04 0.81 5.30 -4.98 -0.03 0.78 16 14 C 0.41 9.52 7.04 -10.98 -0.08 9.44 16 15 O -0.60 -15.08 11.20 5.54 0.06 -15.02 16 16 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 17 C -0.30 -8.34 9.68 -14.94 -0.14 -8.48 16 18 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 21 Si 0.93 21.04 29.55 -169.99 -5.02 16.01 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H 0.06 1.00 6.24 -51.94 -0.32 0.68 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 28 H 0.06 0.87 7.35 -51.93 -0.38 0.48 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.53 7.52 -51.93 -0.39 0.14 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.39 2.32 8.23 -40.82 -0.34 1.98 16 33 H 0.39 3.10 8.93 -40.82 -0.36 2.74 16 34 H 0.07 1.42 6.00 -51.93 -0.31 1.11 16 35 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 36 H 0.09 1.65 6.32 -51.93 -0.33 1.32 16 37 H 0.09 1.59 8.06 -51.93 -0.42 1.17 16 38 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 306.93 15.07 4.63 4.63 Total: -1.00 -32.35 306.93 -6.41 -38.76 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -5.50 Total: 15.41 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.79 Total: 4.45 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.13 Total: -55.14 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: 0.15 Total: -24.12 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.35 -6.41 -38.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.332 kcal (2) G-P(sol) polarization free energy of solvation -32.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds