Wall clock time and date at job start Mon Mar 30 2020 05:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46668 * 2 1 4 4 C 1.53039 * 109.45818 * 240.02483 * 2 1 3 5 5 C 1.53126 * 109.28009 * 180.80880 * 4 2 1 6 6 C 1.53099 * 109.15071 * 57.65227 * 5 4 2 7 7 H 1.09007 * 109.48839 * 182.39531 * 6 5 4 8 8 C 1.50702 * 109.50482 * 62.29310 * 6 5 4 9 9 N 1.34768 * 120.00357 * 60.17628 * 8 6 5 10 10 O 1.21281 * 120.00059 * 240.17637 * 8 6 5 11 11 C 1.53034 * 109.29509 * 302.33888 * 6 5 4 12 12 N 1.46847 * 109.51345 * 59.18740 * 11 6 5 13 13 C 1.46898 * 110.99897 * 174.16738 * 12 11 6 14 14 C 1.50703 * 109.47292 * 66.04550 * 13 12 11 15 15 O 1.21297 * 119.99998 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00340 * 179.97438 * 14 13 12 17 17 C 1.37095 * 120.00345 * 180.02562 * 16 14 13 18 18 H 1.08003 * 119.99664 * 359.97438 * 17 16 14 19 19 C 1.38943 * 120.00257 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99998 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00395 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46740 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47223 * 119.99601 * 21 19 17 24 24 H 1.48492 * 109.47385 * 239.99809 * 21 19 17 25 25 H 1.08988 * 109.47518 * 300.02568 * 1 2 3 26 26 H 1.09003 * 109.46970 * 60.02612 * 1 2 3 27 27 H 1.09007 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.50227 * 300.74706 * 4 2 1 29 29 H 1.09000 * 109.50337 * 60.86930 * 4 2 1 30 30 H 1.08990 * 109.52264 * 177.55890 * 5 4 2 31 31 H 1.09002 * 109.52383 * 297.68676 * 5 4 2 32 32 H 0.97002 * 119.99881 * 0.02562 * 9 8 6 33 33 H 0.97008 * 120.00338 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46271 * 299.17460 * 11 6 5 35 35 H 1.08994 * 109.46242 * 179.19760 * 11 6 5 36 36 H 1.09002 * 109.47176 * 186.04194 * 13 12 11 37 37 H 1.08995 * 109.47485 * 306.04221 * 13 12 11 38 38 H 0.97001 * 119.99701 * 359.97438 * 16 14 13 39 39 H 0.97000 * 119.99776 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 -1.2500 5 6 3.5709 -0.7363 -1.2357 6 6 4.0544 -1.4190 0.0465 7 1 5.1436 -1.3951 0.0827 8 6 3.5810 -2.8496 0.0641 9 7 3.9587 -3.6965 -0.9138 10 8 2.8601 -3.2389 0.9584 11 6 3.4864 -0.6779 1.2590 12 7 2.0192 -0.6918 1.1994 13 6 1.4374 -0.1106 2.4166 14 6 1.7795 1.3555 2.4863 15 8 2.4424 1.8660 1.6082 16 7 1.3480 2.0996 3.5239 17 6 1.6588 3.4334 3.5871 18 1 2.2497 3.8877 2.8056 19 6 1.2144 4.2003 4.6570 20 7 0.4957 3.6474 5.6083 21 14 1.6384 6.0175 4.7435 22 1 2.4508 6.3931 3.5586 23 1 0.3875 6.8175 4.7591 24 1 2.4134 6.2867 5.9812 25 1 -0.3634 0.5142 0.8896 26 1 -0.3633 0.5134 -0.8902 27 1 -0.3633 -1.0277 0.0005 28 1 1.6657 -1.7447 -1.2576 29 1 1.6894 -0.1982 -2.1399 30 1 3.9377 -1.2865 -2.1020 31 1 3.9457 0.2867 -1.2685 32 1 4.5356 -3.3853 -1.6289 33 1 3.6543 -4.6175 -0.9023 34 1 3.8404 0.3530 1.2532 35 1 3.8174 -1.1703 2.1734 36 1 0.3542 -0.2302 2.3944 37 1 1.8413 -0.6199 3.2915 38 1 0.8169 1.6916 4.2256 39 1 0.1852 4.1829 6.3550 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066665272.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:41 Heat of formation + Delta-G solvation = -99.570451 kcal Electronic energy + Delta-G solvation = -21884.077294 eV Core-core repulsion = 18632.204094 eV Total energy + Delta-G solvation = -3251.873200 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57932 -40.18726 -38.35851 -35.97839 -34.93378 -33.77757 -33.33177 -33.19197 -29.03750 -28.11549 -26.39983 -24.25017 -23.61343 -21.95051 -20.94091 -20.18618 -19.68493 -18.10019 -17.61658 -17.33686 -16.94193 -16.47360 -16.45527 -15.77388 -15.73386 -15.34488 -15.04556 -14.73630 -14.39310 -13.85173 -13.67102 -13.48743 -13.11573 -12.98961 -12.94884 -12.80287 -12.56939 -12.42527 -12.32153 -12.13591 -11.78824 -11.38763 -11.29444 -11.07054 -10.87939 -10.57798 -10.39570 -9.99267 -8.81477 -8.44817 -5.96536 1.34288 1.39651 1.53851 1.93516 2.00915 2.28265 2.78446 3.06437 3.19338 3.26269 3.76517 3.90980 4.01943 4.08668 4.37235 4.39872 4.42352 4.55256 4.61803 4.63766 4.76304 4.80424 4.90925 4.95375 5.03802 5.07016 5.20835 5.23006 5.25167 5.39031 5.58618 5.94162 6.12460 6.15647 6.32540 6.58102 6.69637 7.10837 7.54408 7.62999 8.08483 8.69731 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034890 B = 0.004647 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.326959 B = 6023.534190 C = 6071.183125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.051 3.949 3 H 0.055 0.945 4 C -0.105 4.105 5 C -0.105 4.105 6 C -0.101 4.101 7 H 0.122 0.878 8 C 0.525 3.475 9 N -0.843 5.843 10 O -0.564 6.564 11 C 0.062 3.938 12 N -0.486 5.486 13 C 0.049 3.951 14 C 0.414 3.586 15 O -0.615 6.615 16 N -0.572 5.572 17 C -0.331 4.331 18 H 0.080 0.920 19 C -0.014 4.014 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.271 1.271 24 H -0.271 1.271 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.414 0.586 33 H 0.404 0.596 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.394 0.606 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.634 -11.859 -13.877 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.057 4.057 3 H 0.073 0.927 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.123 4.123 7 H 0.140 0.860 8 C 0.310 3.690 9 N -0.408 5.408 10 O -0.441 6.441 11 C -0.066 4.066 12 N -0.209 5.209 13 C -0.083 4.083 14 C 0.201 3.799 15 O -0.503 6.503 16 N -0.209 5.209 17 C -0.461 4.461 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.197 1.197 24 H -0.197 1.197 25 H 0.053 0.947 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.085 0.915 32 H 0.245 0.755 33 H 0.235 0.765 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.227 0.773 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.382 -12.023 -13.678 18.990 hybrid contribution 0.087 1.440 0.749 1.625 sum 5.468 -10.584 -12.929 17.581 Atomic orbital electron populations 1.21802 0.94865 1.01711 1.01197 1.22029 0.95319 0.97731 0.90616 0.92729 1.21600 0.95933 1.00450 0.96255 1.21568 0.95535 1.01278 0.95848 1.21431 1.02316 0.91700 0.96827 0.86011 1.20513 0.79186 0.87993 0.81317 1.43696 1.54493 1.14337 1.28292 1.90746 1.37295 1.78436 1.37622 1.21927 0.88320 0.98647 0.97737 1.62503 1.06994 1.50854 1.00521 1.22085 1.02103 0.88593 0.95523 1.22043 0.83955 0.90736 0.83126 1.90363 1.44710 1.74884 1.40304 1.42171 1.47637 1.09189 1.21876 1.19707 1.32649 0.85722 1.07984 0.90188 1.26072 0.96099 1.04574 0.94628 1.69698 1.36344 1.38689 1.11516 0.84862 0.78242 0.76905 0.78263 1.19662 1.19662 1.19673 0.94685 0.91407 0.91812 0.91978 0.90121 0.87810 0.91547 0.75544 0.76517 0.93970 0.92420 0.88023 0.88914 0.77300 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 8.76 71.98 0.63 -3.78 16 2 C 0.05 1.74 1.95 44.93 0.09 1.83 16 3 H 0.05 2.31 5.36 -2.38 -0.01 2.29 16 4 C -0.10 -2.64 5.12 30.65 0.16 -2.49 16 5 C -0.10 -2.19 5.43 30.67 0.17 -2.02 16 6 C -0.10 -2.43 3.02 -11.49 -0.03 -2.47 16 7 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 8 C 0.53 12.92 6.14 87.66 0.54 13.45 16 9 N -0.84 -11.79 8.76 -173.54 -1.52 -13.31 16 10 O -0.56 -19.62 16.07 -3.03 -0.05 -19.67 16 11 C 0.06 2.15 4.08 86.32 0.35 2.50 16 12 N -0.49 -17.57 3.55 -875.64 -3.11 -20.68 16 13 C 0.05 1.94 5.30 85.56 0.45 2.39 16 14 C 0.41 20.04 7.04 87.66 0.62 20.66 16 15 O -0.61 -32.49 11.20 -3.08 -0.03 -32.53 16 16 N -0.57 -30.21 5.29 -306.98 -1.62 -31.84 16 17 C -0.33 -18.97 9.68 84.04 0.81 -18.16 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 20 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 21 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 22 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 25 H 0.03 1.24 6.24 -2.39 -0.01 1.23 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.06 1.59 7.35 -2.39 -0.02 1.57 16 29 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.30 7.52 -2.39 -0.02 1.28 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.41 2.89 8.23 -92.71 -0.76 2.13 16 33 H 0.40 4.97 8.93 -92.70 -0.83 4.14 16 34 H 0.04 1.71 6.00 -2.39 -0.01 1.69 16 35 H 0.06 2.07 8.00 -2.39 -0.02 2.05 16 36 H 0.10 3.78 6.32 -2.39 -0.02 3.77 16 37 H 0.09 3.53 8.06 -2.39 -0.02 3.51 16 38 H 0.39 20.22 7.90 -92.71 -0.73 19.48 16 39 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -72.36 306.93 -1.00 -73.36 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -1.22 Total: 38.20 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 4.25 Total: 11.63 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -5.97 Total: -116.42 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -0.08 Total: -52.20 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.36 -1.00 -73.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665272.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.211 kcal (2) G-P(sol) polarization free energy of solvation -72.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds