Wall clock time and date at job start Mon Mar 30 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.46470 * 2 1 4 4 C 1.53038 * 109.45806 * 119.97360 * 2 1 3 5 5 C 1.53118 * 109.31372 * 179.16778 * 4 2 1 6 6 C 1.53116 * 109.16148 * 302.40498 * 5 4 2 7 7 H 1.09006 * 109.50257 * 297.63547 * 6 5 4 8 8 C 1.50700 * 109.50600 * 177.55519 * 6 5 4 9 9 N 1.34777 * 119.99675 * 60.35691 * 8 6 5 10 10 O 1.21283 * 119.99803 * 240.07816 * 8 6 5 11 11 C 1.53038 * 109.30904 * 57.59475 * 6 5 4 12 12 N 1.46851 * 109.52466 * 300.84000 * 11 6 5 13 13 C 1.46900 * 111.00151 * 185.84185 * 12 11 6 14 14 C 1.50701 * 109.46990 * 293.95538 * 13 12 11 15 15 O 1.21299 * 119.99694 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00212 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00195 * 179.97438 * 16 14 13 18 18 H 1.07993 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99881 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46973 * 120.00270 * 21 19 17 24 24 H 1.48498 * 109.47063 * 239.99691 * 21 19 17 25 25 H 1.09006 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47357 * 299.97792 * 1 2 3 27 27 H 1.09000 * 109.47528 * 59.97978 * 1 2 3 28 28 H 1.09002 * 109.50349 * 299.13650 * 4 2 1 29 29 H 1.09006 * 109.50008 * 59.20597 * 4 2 1 30 30 H 1.09007 * 109.55642 * 182.47950 * 5 4 2 31 31 H 1.08995 * 109.49171 * 62.29156 * 5 4 2 32 32 H 0.97004 * 119.99652 * 179.72868 * 9 8 6 33 33 H 0.97000 * 119.99894 * 359.71837 * 9 8 6 34 34 H 1.08994 * 109.46759 * 60.85877 * 11 6 5 35 35 H 1.09005 * 109.46391 * 180.83780 * 11 6 5 36 36 H 1.08995 * 109.47042 * 53.95016 * 13 12 11 37 37 H 1.08998 * 109.47219 * 173.95747 * 13 12 11 38 38 H 0.96998 * 120.00152 * 359.97438 * 16 14 13 39 39 H 0.97006 * 119.99811 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7372 1.2362 6 6 4.0546 -1.4192 -0.0465 7 1 3.7126 -2.4541 -0.0596 8 6 5.5604 -1.3861 -0.0968 9 7 6.2803 -1.9835 0.8734 10 8 6.1243 -0.8262 -1.0130 11 6 3.4864 -0.6780 -1.2589 12 7 2.0192 -0.6918 -1.1994 13 6 1.4374 -0.1107 -2.4166 14 6 1.7796 1.3553 -2.4864 15 8 2.4425 1.8658 -1.6082 16 7 1.3482 2.0994 -3.5240 17 6 1.6590 3.4332 -3.5872 18 1 2.2493 3.8877 -2.8053 19 6 1.2147 4.2001 -4.6573 20 7 0.4969 3.6469 -5.6089 21 14 1.6377 6.0176 -4.7430 22 1 2.4503 6.3932 -3.5582 23 1 2.4132 6.2874 -5.9803 24 1 0.3862 6.8168 -4.7592 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3634 0.5141 -0.8898 28 1 1.6892 -0.1982 2.1400 29 1 1.6649 -1.7445 1.2580 30 1 3.9376 -1.2881 2.1023 31 1 3.9456 0.2857 1.2685 32 1 7.2495 -1.9656 0.8390 33 1 5.8291 -2.4312 1.6062 34 1 3.8404 0.3529 -1.2531 35 1 3.8173 -1.1704 -2.1734 36 1 1.8415 -0.6200 -3.2914 37 1 0.3542 -0.2302 -2.3945 38 1 0.8177 1.6912 -4.2261 39 1 0.1870 4.1822 -6.3562 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066665273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:43 Heat of formation + Delta-G solvation = -79.299918 kcal Electronic energy + Delta-G solvation = -21623.954188 eV Core-core repulsion = 18372.959983 eV Total energy + Delta-G solvation = -3250.994204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.20114 -38.91182 -37.08361 -34.18895 -33.73821 -32.80223 -32.02942 -31.23594 -27.62864 -26.92189 -24.57589 -22.91401 -22.32068 -20.37149 -19.53862 -19.00896 -17.78463 -17.43662 -16.59766 -15.89319 -15.36700 -15.00951 -14.68838 -14.51592 -14.25732 -13.87038 -13.82428 -13.46586 -12.87878 -12.71710 -12.36032 -12.11423 -11.70339 -11.61627 -11.45918 -11.24227 -11.09757 -10.77901 -10.43730 -10.40594 -10.31318 -10.22305 -9.99692 -9.70557 -9.64558 -9.41961 -9.14330 -7.95362 -7.32479 -6.41638 -3.82532 2.72382 3.15897 3.27043 3.34371 3.49628 3.87819 4.18385 4.38768 4.76939 4.89836 4.99928 5.10909 5.23400 5.34162 5.36720 5.58863 5.72764 5.80222 5.84098 5.90262 6.03980 6.06375 6.11649 6.18703 6.26546 6.31772 6.38193 6.49490 6.68207 6.77610 6.91225 7.29435 7.45033 7.55229 7.56303 8.05861 8.31284 8.60497 9.17460 9.53857 10.04763 10.75089 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.005078 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.649374 B = 5512.713676 C = 6124.834620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 H 0.094 0.906 4 C -0.105 4.105 5 C -0.108 4.108 6 C -0.100 4.100 7 H 0.099 0.901 8 C 0.521 3.479 9 N -0.860 5.860 10 O -0.536 6.536 11 C 0.062 3.938 12 N -0.510 5.510 13 C 0.039 3.961 14 C 0.409 3.591 15 O -0.591 6.591 16 N -0.558 5.558 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.899 5.899 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.281 1.281 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 -12.659 12.435 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 H 0.112 0.888 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.122 4.122 7 H 0.117 0.883 8 C 0.306 3.694 9 N -0.424 5.424 10 O -0.411 6.411 11 C -0.066 4.066 12 N -0.233 5.233 13 C -0.093 4.093 14 C 0.194 3.806 15 O -0.478 6.478 16 N -0.193 5.193 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.755 3.245 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.207 1.207 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.226 0.774 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.074 -12.307 12.189 17.592 hybrid contribution 0.294 1.226 -0.331 1.303 sum 3.368 -11.081 11.858 16.576 Atomic orbital electron populations 1.21845 0.95223 1.01280 1.01690 1.22031 0.94719 0.99749 0.89034 0.88816 1.21573 0.94082 1.00985 0.97616 1.21539 0.97090 1.01092 0.94910 1.21292 0.90210 1.02428 0.98281 0.88273 1.20769 0.90397 0.76986 0.81243 1.43900 1.10619 1.59821 1.28069 1.90775 1.73018 1.42984 1.34347 1.21940 0.87412 1.01620 0.95616 1.62404 1.06922 1.52435 1.01567 1.22082 1.01133 0.92297 0.93748 1.21086 0.85667 0.89187 0.84611 1.90391 1.43913 1.73705 1.39788 1.42052 1.46727 1.09546 1.20980 1.19759 1.31303 0.84253 1.07631 0.87960 1.25269 0.96607 1.00576 0.95386 1.69622 1.36122 1.37152 1.11134 0.85820 0.78196 0.82075 0.78381 1.19270 1.20711 1.20734 0.92708 0.92835 0.92440 0.91657 0.91684 0.92051 0.91315 0.77228 0.77288 0.90476 0.91157 0.89506 0.88874 0.77420 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 8.76 37.15 0.33 -1.76 16 2 C 0.05 0.85 1.96 -67.72 -0.13 0.72 16 3 H 0.09 1.92 5.36 -51.93 -0.28 1.64 16 4 C -0.10 -1.30 5.37 -26.65 -0.14 -1.45 16 5 C -0.11 -1.30 5.17 -26.61 -0.14 -1.44 16 6 C -0.10 -1.34 2.69 -91.69 -0.25 -1.58 16 7 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 8 C 0.52 7.29 7.42 -10.98 -0.08 7.21 16 9 N -0.86 -7.60 8.78 31.22 0.27 -7.33 16 10 O -0.54 -10.25 16.82 5.55 0.09 -10.16 16 11 C 0.06 1.10 3.67 -3.83 -0.01 1.08 16 12 N -0.51 -8.52 4.69 -228.12 -1.07 -9.59 16 13 C 0.04 0.71 5.30 -4.98 -0.03 0.68 16 14 C 0.41 9.55 7.04 -10.99 -0.08 9.47 16 15 O -0.59 -15.42 11.20 5.54 0.06 -15.36 16 16 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 17 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 21 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.94 6.24 -51.93 -0.32 0.61 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.40 3.10 8.93 -40.82 -0.36 2.73 16 33 H 0.40 2.24 8.31 -40.82 -0.34 1.90 16 34 H 0.08 1.70 5.94 -51.93 -0.31 1.39 16 35 H 0.07 1.27 8.04 -51.93 -0.42 0.85 16 36 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 37 H 0.09 1.53 6.32 -51.93 -0.33 1.21 16 38 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 39 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 310.35 15.07 4.68 4.68 Total: -1.00 -33.20 310.35 -6.64 -39.84 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -5.55 Total: 14.90 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.77 Total: 4.91 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.13 Total: -55.14 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.16 Total: -25.52 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.20 -6.64 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.463 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds