Wall clock time and date at job start Mon Mar 30 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.46470 * 2 1 4 4 C 1.53038 * 109.45806 * 119.97360 * 2 1 3 5 5 C 1.53118 * 109.31372 * 179.16778 * 4 2 1 6 6 C 1.53116 * 109.16148 * 302.40498 * 5 4 2 7 7 H 1.09006 * 109.50257 * 297.63547 * 6 5 4 8 8 C 1.50700 * 109.50600 * 177.55519 * 6 5 4 9 9 N 1.34777 * 119.99675 * 60.35691 * 8 6 5 10 10 O 1.21283 * 119.99803 * 240.07816 * 8 6 5 11 11 C 1.53038 * 109.30904 * 57.59475 * 6 5 4 12 12 N 1.46851 * 109.52466 * 300.84000 * 11 6 5 13 13 C 1.46900 * 111.00151 * 185.84185 * 12 11 6 14 14 C 1.50701 * 109.46990 * 293.95538 * 13 12 11 15 15 O 1.21299 * 119.99694 * 359.97438 * 14 13 12 16 16 N 1.34769 * 120.00212 * 180.02562 * 14 13 12 17 17 C 1.37100 * 120.00195 * 179.97438 * 16 14 13 18 18 H 1.07993 * 119.99809 * 359.97438 * 17 16 14 19 19 C 1.38951 * 119.99881 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99950 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99726 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47404 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46973 * 120.00270 * 21 19 17 24 24 H 1.48498 * 109.47063 * 239.99691 * 21 19 17 25 25 H 1.09006 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47357 * 299.97792 * 1 2 3 27 27 H 1.09000 * 109.47528 * 59.97978 * 1 2 3 28 28 H 1.09002 * 109.50349 * 299.13650 * 4 2 1 29 29 H 1.09006 * 109.50008 * 59.20597 * 4 2 1 30 30 H 1.09007 * 109.55642 * 182.47950 * 5 4 2 31 31 H 1.08995 * 109.49171 * 62.29156 * 5 4 2 32 32 H 0.97004 * 119.99652 * 179.72868 * 9 8 6 33 33 H 0.97000 * 119.99894 * 359.71837 * 9 8 6 34 34 H 1.08994 * 109.46759 * 60.85877 * 11 6 5 35 35 H 1.09005 * 109.46391 * 180.83780 * 11 6 5 36 36 H 1.08995 * 109.47042 * 53.95016 * 13 12 11 37 37 H 1.08998 * 109.47219 * 173.95747 * 13 12 11 38 38 H 0.96998 * 120.00152 * 359.97438 * 16 14 13 39 39 H 0.97006 * 119.99811 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7372 1.2362 6 6 4.0546 -1.4192 -0.0465 7 1 3.7126 -2.4541 -0.0596 8 6 5.5604 -1.3861 -0.0968 9 7 6.2803 -1.9835 0.8734 10 8 6.1243 -0.8262 -1.0130 11 6 3.4864 -0.6780 -1.2589 12 7 2.0192 -0.6918 -1.1994 13 6 1.4374 -0.1107 -2.4166 14 6 1.7796 1.3553 -2.4864 15 8 2.4425 1.8658 -1.6082 16 7 1.3482 2.0994 -3.5240 17 6 1.6590 3.4332 -3.5872 18 1 2.2493 3.8877 -2.8053 19 6 1.2147 4.2001 -4.6573 20 7 0.4969 3.6469 -5.6089 21 14 1.6377 6.0176 -4.7430 22 1 2.4503 6.3932 -3.5582 23 1 2.4132 6.2874 -5.9803 24 1 0.3862 6.8168 -4.7592 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5135 0.8902 27 1 -0.3634 0.5141 -0.8898 28 1 1.6892 -0.1982 2.1400 29 1 1.6649 -1.7445 1.2580 30 1 3.9376 -1.2881 2.1023 31 1 3.9456 0.2857 1.2685 32 1 7.2495 -1.9656 0.8390 33 1 5.8291 -2.4312 1.6062 34 1 3.8404 0.3529 -1.2531 35 1 3.8173 -1.1704 -2.1734 36 1 1.8415 -0.6200 -3.2914 37 1 0.3542 -0.2302 -2.3945 38 1 0.8177 1.6912 -4.2261 39 1 0.1870 4.1822 -6.3562 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066665273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:43 Heat of formation + Delta-G solvation = -108.104739 kcal Electronic energy + Delta-G solvation = -21625.203258 eV Core-core repulsion = 18372.959983 eV Total energy + Delta-G solvation = -3252.243275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.52633 -40.38258 -38.64255 -36.02221 -35.04857 -33.98101 -33.33902 -33.20923 -29.06190 -28.24210 -26.45680 -24.25711 -23.46490 -21.72929 -20.90711 -20.61045 -19.74149 -18.41892 -17.80368 -17.63618 -16.66251 -16.52121 -16.37670 -15.97673 -15.66387 -15.50581 -15.12314 -14.98835 -14.36363 -14.06186 -13.73764 -13.52042 -13.33733 -13.01411 -12.83301 -12.79153 -12.55473 -12.45600 -12.16746 -12.00220 -11.81487 -11.56300 -11.35646 -11.11813 -10.96188 -10.81402 -10.64080 -10.00496 -8.98234 -8.48263 -5.98387 1.31861 1.37070 1.51189 1.63549 2.00219 2.26626 2.49504 3.11341 3.17060 3.25213 3.69932 3.86235 3.96934 4.13539 4.30002 4.39861 4.41287 4.55532 4.60199 4.61815 4.74848 4.80946 4.89659 4.96819 5.09358 5.12482 5.22084 5.29533 5.31056 5.37073 5.62227 5.90518 5.92075 6.06574 6.18525 6.48412 6.57011 7.09767 7.38264 7.52815 8.08788 8.67330 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023142 B = 0.005078 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.649374 B = 5512.713676 C = 6124.834620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.046 3.954 3 H 0.043 0.957 4 C -0.098 4.098 5 C -0.105 4.105 6 C -0.092 4.092 7 H 0.134 0.866 8 C 0.519 3.481 9 N -0.830 5.830 10 O -0.600 6.600 11 C 0.064 3.936 12 N -0.489 5.489 13 C 0.045 3.955 14 C 0.409 3.591 15 O -0.619 6.619 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.074 0.926 19 C -0.011 4.011 20 N -0.918 5.918 21 Si 0.991 3.009 22 H -0.277 1.277 23 H -0.271 1.271 24 H -0.267 1.267 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.407 0.593 33 H 0.420 0.580 34 H 0.022 0.978 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.395 0.605 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -14.735 14.206 20.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.062 4.062 3 H 0.061 0.939 4 C -0.135 4.135 5 C -0.142 4.142 6 C -0.113 4.113 7 H 0.152 0.848 8 C 0.304 3.696 9 N -0.394 5.394 10 O -0.480 6.480 11 C -0.064 4.064 12 N -0.212 5.212 13 C -0.087 4.087 14 C 0.196 3.804 15 O -0.507 6.507 16 N -0.208 5.208 17 C -0.463 4.463 18 H 0.092 0.908 19 C -0.211 4.211 20 N -0.559 5.559 21 Si 0.814 3.186 22 H -0.202 1.202 23 H -0.196 1.196 24 H -0.192 1.192 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.100 0.900 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.054 0.946 32 H 0.238 0.762 33 H 0.252 0.748 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.229 0.771 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.482 -14.439 14.020 20.278 hybrid contribution 0.509 1.817 -0.797 2.049 sum 2.991 -12.621 13.223 18.523 Atomic orbital electron populations 1.21812 0.93809 1.02725 1.01171 1.22086 0.95935 0.97627 0.90570 0.93927 1.21568 0.94074 1.02114 0.95783 1.21569 0.97008 0.99806 0.95858 1.21251 0.89739 1.03616 0.96737 0.84784 1.20925 0.90869 0.76574 0.81249 1.43612 1.11048 1.57784 1.27005 1.90760 1.74019 1.46073 1.37175 1.21819 0.87904 0.99016 0.97706 1.62557 1.06244 1.51127 1.01250 1.22192 1.02784 0.88320 0.95379 1.22160 0.83894 0.91181 0.83155 1.90412 1.44641 1.75059 1.40618 1.42125 1.47746 1.09073 1.21896 1.19648 1.32717 0.85918 1.07987 0.90808 1.26015 0.96082 1.04438 0.94588 1.69677 1.36257 1.38614 1.11384 0.84910 0.78354 0.77150 0.78139 1.20163 1.19624 1.19184 0.90070 0.91578 0.94885 0.90050 0.88828 0.87204 0.94635 0.76204 0.74799 0.95924 0.92292 0.88122 0.86505 0.77076 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 8.76 71.98 0.63 -3.16 16 2 C 0.05 1.45 1.96 44.93 0.09 1.54 16 3 H 0.04 1.83 5.36 -2.39 -0.01 1.82 16 4 C -0.10 -2.12 5.37 30.65 0.16 -1.96 16 5 C -0.10 -2.24 5.17 30.67 0.16 -2.08 16 6 C -0.09 -2.28 2.69 -11.49 -0.03 -2.32 16 7 H 0.13 2.46 8.14 -2.38 -0.02 2.44 16 8 C 0.52 14.00 7.42 87.66 0.65 14.65 16 9 N -0.83 -12.38 8.78 -173.53 -1.52 -13.90 16 10 O -0.60 -23.72 16.82 -3.04 -0.05 -23.77 16 11 C 0.06 2.31 3.67 86.33 0.32 2.63 16 12 N -0.49 -16.06 4.69 -875.65 -4.11 -20.17 16 13 C 0.05 1.65 5.30 85.56 0.45 2.10 16 14 C 0.41 20.05 7.04 87.66 0.62 20.66 16 15 O -0.62 -34.54 11.20 -3.09 -0.03 -34.58 16 16 N -0.57 -30.48 5.29 -306.99 -1.62 -32.11 16 17 C -0.33 -19.60 9.68 84.04 0.81 -18.79 16 18 H 0.07 4.68 7.16 -2.91 -0.02 4.66 16 19 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 20 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 21 Si 0.99 44.50 29.55 68.60 2.03 46.53 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.03 1.05 6.24 -2.39 -0.01 1.03 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 30 H 0.11 1.32 7.66 -2.38 -0.02 1.30 16 31 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.41 5.37 8.93 -92.71 -0.83 4.54 16 33 H 0.42 2.84 8.31 -92.71 -0.77 2.07 16 34 H 0.02 1.07 5.94 -2.39 -0.01 1.05 16 35 H 0.06 2.19 8.04 -2.38 -0.02 2.17 16 36 H 0.10 3.42 8.06 -2.39 -0.02 3.40 16 37 H 0.12 3.76 6.32 -2.39 -0.02 3.74 16 38 H 0.40 20.10 7.90 -92.71 -0.73 19.37 16 39 H 0.28 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -78.46 310.35 -1.93 -80.40 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -1.23 Total: 35.09 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: 4.33 Total: 13.12 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.97 Total: -116.78 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.09 Total: -58.35 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -78.46 -1.93 -80.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.708 kcal (2) G-P(sol) polarization free energy of solvation -78.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds