Wall clock time and date at job start Mon Mar 30 2020 05:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45255 * 2 1 4 4 C 1.53030 * 109.46019 * 240.02614 * 2 1 3 5 5 C 1.53115 * 109.27791 * 180.80627 * 4 2 1 6 6 C 1.53128 * 109.16243 * 57.65266 * 5 4 2 7 7 H 1.08998 * 109.50134 * 62.32525 * 6 5 4 8 8 C 1.50692 * 109.50197 * 182.40578 * 6 5 4 9 9 N 1.34770 * 120.00341 * 299.99510 * 8 6 5 10 10 O 1.21282 * 119.99933 * 120.00241 * 8 6 5 11 11 C 1.53035 * 109.27343 * 302.34815 * 6 5 4 12 12 N 1.46844 * 109.45907 * 119.97093 * 2 1 3 13 13 C 1.46901 * 111.00380 * 305.85164 * 12 2 1 14 14 C 1.50702 * 109.47227 * 163.93444 * 13 12 2 15 15 O 1.21296 * 119.99778 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00070 * 179.72912 * 14 13 12 17 17 C 1.37095 * 120.00068 * 180.27612 * 16 14 13 18 18 H 1.08000 * 119.99886 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00030 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47417 * 89.99872 * 21 19 17 23 23 H 1.48498 * 109.47448 * 210.00161 * 21 19 17 24 24 H 1.48504 * 109.46983 * 330.00012 * 21 19 17 25 25 H 1.09004 * 109.46809 * 307.48060 * 1 2 3 26 26 H 1.08999 * 109.47255 * 67.47267 * 1 2 3 27 27 H 1.08996 * 109.47571 * 187.47852 * 1 2 3 28 28 H 1.09003 * 109.50280 * 300.74292 * 4 2 1 29 29 H 1.08998 * 109.50846 * 60.82386 * 4 2 1 30 30 H 1.08994 * 109.52479 * 177.55572 * 5 4 2 31 31 H 1.09003 * 109.52617 * 297.75028 * 5 4 2 32 32 H 0.96998 * 120.00253 * 0.02562 * 9 8 6 33 33 H 0.97002 * 120.00397 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46354 * 299.15918 * 11 6 5 35 35 H 1.09005 * 109.45848 * 179.19688 * 11 6 5 36 36 H 1.09001 * 109.46971 * 43.93533 * 13 12 2 37 37 H 1.09000 * 109.47206 * 283.93805 * 13 12 2 38 38 H 0.96996 * 119.99680 * 0.27123 * 16 14 13 39 39 H 0.97002 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2356 6 6 4.0548 -1.4188 0.0468 7 1 3.7130 -2.4538 0.0593 8 6 5.5605 -1.3855 0.0971 9 7 6.2806 -1.9760 -0.8771 10 8 6.1244 -0.8273 1.0144 11 6 3.4864 -0.6776 1.2591 12 7 2.0192 -0.6917 1.1994 13 6 1.4373 -0.1104 2.4166 14 6 1.6327 -1.0605 3.5700 15 8 2.2012 -2.1176 3.3953 16 7 1.1810 -0.7329 4.7968 17 6 1.3637 -1.5947 5.8472 18 1 1.8693 -2.5363 5.6916 19 6 0.8985 -1.2568 7.1121 20 7 0.2838 -0.1109 7.3017 21 14 1.1468 -2.4313 8.5433 22 1 2.4393 -2.1322 9.2107 23 1 0.0375 -2.2671 9.5167 24 1 1.1612 -3.8285 8.0403 25 1 -0.3633 0.6254 0.8156 26 1 -0.3634 0.3937 -0.9492 27 1 -0.3634 -1.0188 0.1337 28 1 1.6659 -1.7447 -1.2575 29 1 1.6889 -0.1986 -2.1399 30 1 3.9378 -1.2864 -2.1019 31 1 3.9457 0.2870 -1.2672 32 1 5.8297 -2.4222 -1.6109 33 1 7.2498 -1.9542 -0.8449 34 1 3.8403 0.3533 1.2532 35 1 3.8175 -1.1698 2.1736 36 1 0.3718 0.0612 2.2637 37 1 1.9296 0.8364 2.6383 38 1 0.7266 0.1126 4.9365 39 1 -0.0414 0.1249 8.1846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066665274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:46 Heat of formation + Delta-G solvation = -79.838025 kcal Electronic energy + Delta-G solvation = -21267.409187 eV Core-core repulsion = 18016.391649 eV Total energy + Delta-G solvation = -3251.017538 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.17675 -38.67325 -37.42676 -34.15747 -33.78406 -32.98569 -32.14055 -31.11451 -27.76959 -27.06137 -24.58062 -23.09865 -22.47260 -20.32163 -19.53507 -19.05452 -17.80622 -17.46719 -16.64610 -16.03286 -15.44106 -14.88190 -14.73815 -14.51307 -14.32071 -13.91203 -13.76930 -13.56668 -13.10982 -12.88522 -12.46085 -12.18046 -11.86373 -11.84160 -11.44139 -11.38963 -11.06826 -10.98210 -10.86742 -10.45323 -10.32937 -10.22092 -10.12345 -9.73961 -9.70674 -9.39553 -8.37409 -7.88129 -7.76682 -6.33675 -3.73888 2.69188 3.23697 3.31515 3.37394 3.44096 4.01331 4.06271 4.30928 4.64550 4.71300 4.83740 5.05732 5.15396 5.23321 5.32923 5.40644 5.50181 5.58010 5.61946 5.67203 5.81352 5.83990 5.90227 6.01679 6.06865 6.16798 6.23365 6.35150 6.43928 6.53586 6.73318 7.26384 7.36816 7.49195 7.63013 8.15338 8.27873 8.71328 9.27018 9.64125 10.16660 10.84406 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.004837 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.166312 B = 5786.884541 C = 6735.565010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.037 0.963 4 C -0.107 4.107 5 C -0.110 4.110 6 C -0.103 4.103 7 H 0.109 0.891 8 C 0.523 3.477 9 N -0.859 5.859 10 O -0.538 6.538 11 C 0.079 3.921 12 N -0.510 5.510 13 C 0.041 3.959 14 C 0.446 3.554 15 O -0.576 6.576 16 N -0.568 5.568 17 C -0.295 4.295 18 H 0.102 0.898 19 C 0.021 3.979 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.270 1.270 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.399 0.601 33 H 0.398 0.602 34 H 0.031 0.969 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.391 0.609 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.470 1.030 -19.235 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.032 4.032 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.148 4.148 6 C -0.125 4.125 7 H 0.127 0.873 8 C 0.308 3.692 9 N -0.423 5.423 10 O -0.414 6.414 11 C -0.049 4.049 12 N -0.235 5.235 13 C -0.090 4.090 14 C 0.232 3.768 15 O -0.459 6.459 16 N -0.205 5.205 17 C -0.425 4.425 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.546 5.546 21 Si 0.756 3.244 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.195 1.195 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.228 0.772 33 H 0.228 0.772 34 H 0.049 0.951 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.795 0.315 -18.519 18.907 hybrid contribution 0.277 0.623 0.573 0.890 sum 4.072 0.938 -17.946 18.427 Atomic orbital electron populations 1.21942 0.94355 1.03052 1.01353 1.21662 0.95512 0.95268 0.90772 0.94538 1.21595 0.94281 1.01990 0.96664 1.21582 0.96830 1.00671 0.95713 1.21313 0.90291 1.03518 0.97336 0.87268 1.20713 0.90301 0.77031 0.81151 1.43883 1.10648 1.60040 1.27727 1.90764 1.73034 1.43487 1.34078 1.21857 0.86351 0.98270 0.98452 1.61467 1.06981 1.54449 1.00571 1.21946 1.00881 0.95916 0.90256 1.19775 0.84777 0.88624 0.83660 1.90499 1.46062 1.25570 1.83784 1.41858 1.51758 1.20129 1.06726 1.19686 1.34991 1.01381 0.86449 0.87993 1.25230 0.96903 0.97042 0.98819 1.69613 1.39126 1.21855 1.23997 0.85878 0.77745 0.80369 0.80410 1.20485 1.21002 1.19465 0.92298 0.92403 0.91322 0.90586 0.91340 0.91561 0.91851 0.77236 0.77169 0.95084 0.88011 0.88713 0.93430 0.77579 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.57 37.16 0.32 -1.41 16 2 C 0.08 0.98 2.44 -67.73 -0.17 0.81 16 3 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.11 -1.09 5.37 -26.66 -0.14 -1.24 16 5 C -0.11 -1.09 5.16 -26.61 -0.14 -1.23 16 6 C -0.10 -1.38 2.69 -91.69 -0.25 -1.63 16 7 H 0.11 1.48 8.14 -51.93 -0.42 1.06 16 8 C 0.52 7.27 7.43 -10.99 -0.08 7.19 16 9 N -0.86 -7.53 8.78 31.22 0.27 -7.26 16 10 O -0.54 -10.13 16.82 5.56 0.09 -10.04 16 11 C 0.08 1.38 3.68 -3.83 -0.01 1.37 16 12 N -0.51 -8.60 4.12 -228.12 -0.94 -9.54 16 13 C 0.04 0.76 5.26 -4.97 -0.03 0.74 16 14 C 0.45 10.88 7.47 -10.99 -0.08 10.80 16 15 O -0.58 -15.92 14.42 5.54 0.08 -15.84 16 16 N -0.57 -14.83 5.29 -10.96 -0.06 -14.89 16 17 C -0.30 -8.46 9.68 -14.94 -0.14 -8.60 16 18 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -25.18 13.05 55.50 0.72 -24.46 16 21 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 25 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 26 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 2.22 8.30 -40.82 -0.34 1.88 16 33 H 0.40 3.06 8.93 -40.82 -0.36 2.69 16 34 H 0.03 0.55 8.08 -51.93 -0.42 0.13 16 35 H 0.10 2.24 6.32 -51.93 -0.33 1.92 16 36 H 0.09 1.57 5.55 -51.93 -0.29 1.28 16 37 H 0.05 0.84 8.05 -51.93 -0.42 0.43 16 38 H 0.39 9.78 7.90 -40.82 -0.32 9.46 16 39 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -34.68 316.27 -6.58 -41.26 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.68 Total: 12.11 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -0.82 Total: 7.29 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.00 Total: -56.14 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: 0.17 Total: -25.88 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.68 -6.58 -41.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.578 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds