Wall clock time and date at job start Mon Mar 30 2020 05:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45255 * 2 1 4 4 C 1.53030 * 109.46019 * 240.02614 * 2 1 3 5 5 C 1.53115 * 109.27791 * 180.80627 * 4 2 1 6 6 C 1.53128 * 109.16243 * 57.65266 * 5 4 2 7 7 H 1.08998 * 109.50134 * 62.32525 * 6 5 4 8 8 C 1.50692 * 109.50197 * 182.40578 * 6 5 4 9 9 N 1.34770 * 120.00341 * 299.99510 * 8 6 5 10 10 O 1.21282 * 119.99933 * 120.00241 * 8 6 5 11 11 C 1.53035 * 109.27343 * 302.34815 * 6 5 4 12 12 N 1.46844 * 109.45907 * 119.97093 * 2 1 3 13 13 C 1.46901 * 111.00380 * 305.85164 * 12 2 1 14 14 C 1.50702 * 109.47227 * 163.93444 * 13 12 2 15 15 O 1.21296 * 119.99778 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00070 * 179.72912 * 14 13 12 17 17 C 1.37095 * 120.00068 * 180.27612 * 16 14 13 18 18 H 1.08000 * 119.99886 * 359.97438 * 17 16 14 19 19 C 1.38946 * 120.00030 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00119 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47417 * 89.99872 * 21 19 17 23 23 H 1.48498 * 109.47448 * 210.00161 * 21 19 17 24 24 H 1.48504 * 109.46983 * 330.00012 * 21 19 17 25 25 H 1.09004 * 109.46809 * 307.48060 * 1 2 3 26 26 H 1.08999 * 109.47255 * 67.47267 * 1 2 3 27 27 H 1.08996 * 109.47571 * 187.47852 * 1 2 3 28 28 H 1.09003 * 109.50280 * 300.74292 * 4 2 1 29 29 H 1.08998 * 109.50846 * 60.82386 * 4 2 1 30 30 H 1.08994 * 109.52479 * 177.55572 * 5 4 2 31 31 H 1.09003 * 109.52617 * 297.75028 * 5 4 2 32 32 H 0.96998 * 120.00253 * 0.02562 * 9 8 6 33 33 H 0.97002 * 120.00397 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.46354 * 299.15918 * 11 6 5 35 35 H 1.09005 * 109.45848 * 179.19688 * 11 6 5 36 36 H 1.09001 * 109.46971 * 43.93533 * 13 12 2 37 37 H 1.09000 * 109.47206 * 283.93805 * 13 12 2 38 38 H 0.96996 * 119.99680 * 0.27123 * 16 14 13 39 39 H 0.97002 * 120.00340 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2356 6 6 4.0548 -1.4188 0.0468 7 1 3.7130 -2.4538 0.0593 8 6 5.5605 -1.3855 0.0971 9 7 6.2806 -1.9760 -0.8771 10 8 6.1244 -0.8273 1.0144 11 6 3.4864 -0.6776 1.2591 12 7 2.0192 -0.6917 1.1994 13 6 1.4373 -0.1104 2.4166 14 6 1.6327 -1.0605 3.5700 15 8 2.2012 -2.1176 3.3953 16 7 1.1810 -0.7329 4.7968 17 6 1.3637 -1.5947 5.8472 18 1 1.8693 -2.5363 5.6916 19 6 0.8985 -1.2568 7.1121 20 7 0.2838 -0.1109 7.3017 21 14 1.1468 -2.4313 8.5433 22 1 2.4393 -2.1322 9.2107 23 1 0.0375 -2.2671 9.5167 24 1 1.1612 -3.8285 8.0403 25 1 -0.3633 0.6254 0.8156 26 1 -0.3634 0.3937 -0.9492 27 1 -0.3634 -1.0188 0.1337 28 1 1.6659 -1.7447 -1.2575 29 1 1.6889 -0.1986 -2.1399 30 1 3.9378 -1.2864 -2.1019 31 1 3.9457 0.2870 -1.2672 32 1 5.8297 -2.4222 -1.6109 33 1 7.2498 -1.9542 -0.8449 34 1 3.8403 0.3533 1.2532 35 1 3.8175 -1.1698 2.1736 36 1 0.3718 0.0612 2.2637 37 1 1.9296 0.8364 2.6383 38 1 0.7266 0.1126 4.9365 39 1 -0.0414 0.1249 8.1846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066665274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:41:45 Heat of formation + Delta-G solvation = -109.408941 kcal Electronic energy + Delta-G solvation = -21268.691478 eV Core-core repulsion = 18016.391649 eV Total energy + Delta-G solvation = -3252.299829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.35577 -40.20641 -38.98380 -35.97390 -35.15484 -34.05016 -33.26682 -33.21420 -29.12454 -28.28015 -26.46770 -24.41233 -23.47362 -21.46796 -20.90219 -20.57062 -19.86375 -18.45098 -17.83949 -17.68266 -16.69037 -16.57770 -16.15406 -15.98537 -15.58721 -15.53443 -15.06168 -14.94171 -14.53753 -14.17649 -13.83627 -13.53661 -13.31095 -13.10304 -12.97452 -12.76224 -12.60405 -12.41966 -12.12205 -12.09778 -11.86319 -11.62041 -11.43371 -11.23052 -10.85055 -10.66956 -10.27876 -9.99236 -9.19864 -8.45700 -5.94283 1.37459 1.40211 1.53480 1.60451 2.07207 2.27610 2.43314 2.88774 3.20538 3.43202 3.63755 3.83171 3.91918 4.07820 4.22019 4.26332 4.33821 4.45327 4.47677 4.52384 4.68329 4.73968 4.87512 4.93986 5.03206 5.10036 5.11556 5.21360 5.33831 5.40972 5.50877 5.89442 5.90518 6.08312 6.29339 6.44763 6.62159 7.14127 7.34748 7.57699 8.14356 8.72067 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022039 B = 0.004837 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.166312 B = 5786.884541 C = 6735.565010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.097 4.097 7 H 0.108 0.892 8 C 0.521 3.479 9 N -0.830 5.830 10 O -0.598 6.598 11 C 0.084 3.916 12 N -0.521 5.521 13 C 0.052 3.948 14 C 0.442 3.558 15 O -0.613 6.613 16 N -0.577 5.577 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.273 1.273 23 H -0.268 1.268 24 H -0.273 1.273 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.419 0.581 33 H 0.408 0.592 34 H 0.022 0.978 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.395 0.605 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.924 1.165 -21.609 21.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 H 0.060 0.940 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.119 4.119 7 H 0.126 0.874 8 C 0.306 3.694 9 N -0.394 5.394 10 O -0.479 6.479 11 C -0.045 4.045 12 N -0.246 5.246 13 C -0.079 4.079 14 C 0.229 3.771 15 O -0.499 6.499 16 N -0.215 5.215 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.199 1.199 23 H -0.192 1.192 24 H -0.197 1.197 25 H 0.071 0.929 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.251 0.749 33 H 0.239 0.761 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.137 0.863 37 H 0.074 0.926 38 H 0.229 0.771 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.239 0.445 -20.969 21.222 hybrid contribution 0.462 0.572 1.247 1.447 sum 3.701 1.017 -19.722 20.092 Atomic orbital electron populations 1.21939 0.93216 1.02327 1.02937 1.21925 0.96460 0.95559 0.89860 0.94028 1.21636 0.94153 1.01989 0.96298 1.21619 0.96825 1.00831 0.94702 1.21254 0.89985 1.03185 0.97472 0.87409 1.20846 0.90684 0.76738 0.81159 1.43599 1.11079 1.58013 1.26686 1.90744 1.73961 1.46541 1.36657 1.21640 0.87114 0.97585 0.98154 1.61486 1.06399 1.55508 1.01243 1.21822 1.02663 0.94331 0.89083 1.20830 0.82922 0.88914 0.84452 1.90465 1.47247 1.27623 1.84543 1.41933 1.52419 1.20062 1.07095 1.19640 1.36799 1.01511 0.88181 0.90540 1.26026 0.95970 0.98638 1.00646 1.69675 1.38915 1.22763 1.24973 0.84936 0.78227 0.77987 0.77218 1.19884 1.19238 1.19741 0.92880 0.89200 0.92626 0.90769 0.87820 0.87528 0.91795 0.74855 0.76090 0.96024 0.93698 0.86285 0.92603 0.77145 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.57 71.98 0.62 -2.39 16 2 C 0.07 1.62 2.44 44.94 0.11 1.73 16 3 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 4 C -0.10 -1.72 5.37 30.64 0.16 -1.55 16 5 C -0.10 -1.68 5.16 30.68 0.16 -1.53 16 6 C -0.10 -2.55 2.69 -11.49 -0.03 -2.58 16 7 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 8 C 0.52 14.31 7.43 87.66 0.65 14.96 16 9 N -0.83 -12.81 8.78 -173.55 -1.52 -14.33 16 10 O -0.60 -23.46 16.82 -3.03 -0.05 -23.51 16 11 C 0.08 3.05 3.68 86.33 0.32 3.37 16 12 N -0.52 -17.63 4.12 -875.65 -3.61 -21.24 16 13 C 0.05 1.97 5.26 85.56 0.45 2.42 16 14 C 0.44 22.53 7.47 87.66 0.65 23.18 16 15 O -0.61 -35.87 14.42 -3.08 -0.04 -35.92 16 16 N -0.58 -31.42 5.29 -306.99 -1.62 -33.04 16 17 C -0.33 -19.75 9.68 84.04 0.81 -18.94 16 18 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -51.56 13.05 21.66 0.28 -51.28 16 21 Si 0.99 44.68 29.55 68.60 2.03 46.71 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 25 H 0.05 1.13 6.44 -2.39 -0.02 1.12 16 26 H 0.09 1.28 8.13 -2.39 -0.02 1.26 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 0.95 7.64 -2.39 -0.02 0.93 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.42 3.20 8.30 -92.71 -0.77 2.43 16 33 H 0.41 5.46 8.93 -92.71 -0.83 4.63 16 34 H 0.02 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.04 2.13 6.32 -2.38 -0.02 2.12 16 36 H 0.12 3.91 5.55 -2.39 -0.01 3.89 16 37 H 0.06 2.02 8.05 -2.39 -0.02 2.00 16 38 H 0.39 20.41 7.90 -92.71 -0.73 19.68 16 39 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -80.41 316.27 -1.40 -81.81 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: -1.24 Total: 32.40 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: 4.37 Total: 18.40 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -6.47 Total: -119.89 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -0.10 Total: -59.43 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -80.41 -1.40 -81.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066665274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.600 kcal (2) G-P(sol) polarization free energy of solvation -80.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds