Wall clock time and date at job start Mon Mar 30 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47400 * 2 1 4 4 C 1.34225 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00075 * 179.97438 * 4 3 2 7 7 C 1.50708 * 109.47211 * 180.02562 * 6 4 3 8 8 O 1.20758 * 119.99872 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99985 * 180.02562 * 7 6 4 10 10 N 1.46891 * 109.46943 * 179.97438 * 9 7 6 11 11 C 1.46895 * 111.00296 * 189.99772 * 10 9 7 12 12 C 1.50697 * 109.47587 * 162.97208 * 11 10 9 13 13 H 1.08001 * 119.99719 * 4.65684 * 12 11 10 14 14 C 1.37872 * 120.00140 * 184.65242 * 12 11 10 15 15 N 1.31514 * 120.00422 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47056 * 90.00020 * 16 14 12 18 18 H 1.48500 * 109.47403 * 210.00260 * 16 14 12 19 19 H 1.48500 * 109.47034 * 330.00513 * 16 14 12 20 20 C 1.46909 * 110.99804 * 66.04629 * 10 9 7 21 21 C 1.53002 * 117.49485 * 127.07463 * 20 10 9 22 22 C 1.52991 * 117.49905 * 58.45002 * 20 10 9 23 23 H 1.09007 * 109.47118 * 60.00069 * 1 2 3 24 24 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99981 * 1 2 3 26 26 H 1.08998 * 109.47336 * 240.00019 * 2 1 3 27 27 H 1.09007 * 109.47118 * 119.99931 * 2 1 3 28 28 H 1.08994 * 109.47263 * 60.00438 * 6 4 3 29 29 H 1.08999 * 109.47066 * 299.99991 * 6 4 3 30 30 H 1.08997 * 109.46821 * 299.99921 * 9 7 6 31 31 H 1.09003 * 109.47225 * 59.99575 * 9 7 6 32 32 H 1.09001 * 109.47039 * 282.97450 * 11 10 9 33 33 H 1.09008 * 109.46776 * 42.97096 * 11 10 9 34 34 H 0.96997 * 120.00837 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.54673 * 272.77952 * 20 10 9 36 36 H 1.08990 * 117.50092 * 359.97438 * 21 20 10 37 37 H 1.09006 * 117.49247 * 145.02271 * 21 20 10 38 38 H 1.08995 * 117.50287 * 214.97648 * 22 20 10 39 39 H 1.09000 * 117.49820 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4257 2.8585 0.0001 8 8 5.9739 1.7826 0.0011 9 6 6.2464 4.1224 0.0002 10 7 7.6746 3.7788 0.0010 11 6 8.5023 4.9687 0.2392 12 6 9.8892 4.5427 0.6465 13 1 10.1537 3.4956 0.6484 14 6 10.8204 5.4896 1.0168 15 7 10.4983 6.7647 1.0149 16 14 12.5394 4.9615 1.5224 17 1 13.4183 4.9254 0.3259 18 1 13.0847 5.9290 2.5082 19 1 12.4819 3.6100 2.1351 20 6 8.0567 3.1140 -1.2521 21 6 9.2426 3.6934 -2.0261 22 6 7.8194 3.8763 -2.5572 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.5844 3.4700 0.8895 29 1 3.5851 3.4690 -0.8905 30 1 6.0134 4.7070 -0.8898 31 1 6.0133 4.7070 0.8902 32 1 8.5578 5.5614 -0.6739 33 1 8.0578 5.5672 1.0344 34 1 11.1533 7.4309 1.2757 35 1 7.9239 2.0322 -1.2698 36 1 9.7388 4.5680 -1.6058 37 1 9.8902 2.9927 -2.5531 38 1 7.5308 3.2962 -3.4336 39 1 7.3793 4.8710 -2.4861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068814306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:02 Heat of formation + Delta-G solvation = -79.196850 kcal Electronic energy + Delta-G solvation = -20674.698459 eV Core-core repulsion = 17391.415974 eV Total energy + Delta-G solvation = -3283.282486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.69669 -39.20973 -37.64321 -36.39375 -33.10617 -32.44325 -32.14533 -30.89246 -28.10300 -25.45717 -23.58018 -22.70760 -21.76974 -21.34741 -19.59586 -18.65884 -17.71483 -16.91071 -16.36214 -16.23542 -16.01836 -15.43351 -15.11397 -14.46951 -14.25378 -14.10927 -13.53639 -13.29650 -12.95969 -12.93501 -12.54268 -12.24298 -12.07200 -11.85715 -11.81235 -11.51284 -11.05983 -10.83168 -10.71850 -10.68442 -10.51566 -10.28908 -9.95630 -9.83303 -9.43578 -9.31816 -8.86962 -8.44472 -7.25503 -6.03246 -4.02136 2.18660 2.35995 2.45126 3.33597 3.40006 3.46266 4.06571 4.44767 4.50522 4.56734 4.67173 4.74923 4.94333 5.02162 5.06820 5.13994 5.32215 5.36036 5.49467 5.63007 5.63731 5.68261 5.70486 5.82764 5.84170 5.92070 6.19383 6.34776 6.65885 6.75151 7.06050 7.16198 7.36850 7.71249 7.80798 7.93837 8.07540 8.16433 8.49797 9.06160 9.60421 11.07176 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036999 B = 0.003632 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.596298 B = 7708.322863 C = 7847.660303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.365 6.365 4 C 0.455 3.545 5 O -0.469 6.469 6 C -0.167 4.167 7 C 0.347 3.653 8 O -0.391 6.391 9 C 0.014 3.986 10 N -0.494 5.494 11 C 0.187 3.813 12 C -0.494 4.494 13 H 0.066 0.934 14 C 0.054 3.946 15 N -0.901 5.901 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.039 3.961 21 C -0.170 4.170 22 C -0.236 4.236 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.061 0.939 31 H 0.104 0.896 32 H -0.001 1.001 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.395 -6.389 -4.048 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.295 3.705 5 O -0.353 6.353 6 C -0.205 4.205 7 C 0.216 3.784 8 O -0.258 6.258 9 C -0.115 4.115 10 N -0.217 5.217 11 C 0.062 3.938 12 C -0.533 4.533 13 H 0.084 0.916 14 C -0.147 4.147 15 N -0.541 5.541 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.197 1.197 20 C -0.071 4.071 21 C -0.207 4.207 22 C -0.276 4.276 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.016 0.984 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.703 -7.482 -3.587 19.551 hybrid contribution 0.658 0.431 -0.393 0.879 sum -17.046 -7.050 -3.980 18.871 Atomic orbital electron populations 1.21801 0.92708 1.02890 1.03460 1.22986 0.95180 0.80389 1.02672 1.86484 1.24842 1.32333 1.84683 1.23346 0.80596 0.92551 0.73997 1.90819 1.59650 1.42427 1.42404 1.21924 0.97549 0.93065 1.07961 1.24249 0.88566 0.91825 0.73802 1.90506 1.73432 1.30797 1.31060 1.22401 0.91637 0.94691 1.02741 1.62034 0.99718 1.29458 1.30511 1.19915 0.92501 0.85605 0.95750 1.21117 0.94943 0.93791 1.43429 0.91621 1.24959 0.98990 0.94843 0.95899 1.69943 1.34987 1.00122 1.49071 0.86511 0.84206 0.78495 0.78351 1.20741 1.21372 1.19730 1.22684 1.02599 0.97289 0.84493 1.23515 0.90401 1.05184 1.01636 1.23360 1.02746 1.02026 0.99420 0.91523 0.90331 0.91478 0.91304 0.91245 0.84752 0.84951 0.92141 0.87853 0.98385 0.94958 0.92952 0.86886 0.84875 0.90095 0.90134 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.15 0.38 -0.57 16 2 C 0.06 0.58 6.19 37.15 0.23 0.81 16 3 O -0.37 -4.13 10.22 -39.24 -0.40 -4.53 16 4 C 0.45 6.08 7.95 36.00 0.29 6.37 16 5 O -0.47 -8.29 13.94 -26.86 -0.37 -8.67 16 6 C -0.17 -1.76 6.23 -29.03 -0.18 -1.94 16 7 C 0.35 5.39 6.92 -29.03 -0.20 5.19 16 8 O -0.39 -7.86 12.60 -18.51 -0.23 -8.10 16 9 C 0.01 0.23 5.27 -4.98 -0.03 0.21 16 10 N -0.49 -10.68 4.41 -229.52 -1.01 -11.69 16 11 C 0.19 4.64 4.27 -4.98 -0.02 4.62 16 12 C -0.49 -13.57 6.87 -34.44 -0.24 -13.81 16 13 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 14 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 15 N -0.90 -26.00 13.29 55.43 0.74 -25.26 16 16 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.04 0.79 5.03 -67.71 -0.34 0.45 16 21 C -0.17 -3.47 8.87 -26.73 -0.24 -3.71 16 22 C -0.24 -4.21 9.27 -26.73 -0.25 -4.46 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 27 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.89 6.83 -51.93 -0.35 0.54 16 31 H 0.10 1.55 7.85 -51.93 -0.41 1.14 16 32 H 0.00 -0.04 6.04 -51.93 -0.31 -0.35 16 33 H 0.03 0.85 7.79 -51.92 -0.40 0.45 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.11 2.40 7.18 -51.93 -0.37 2.03 16 36 H 0.13 3.15 4.91 -51.93 -0.26 2.90 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.49 7.14 -51.93 -0.37 1.12 16 LS Contribution 325.06 15.07 4.90 4.90 Total: -1.00 -33.65 325.06 -7.92 -41.57 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.83 Total: 0.59 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.69 Total: -5.44 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: -0.28 Total: -36.95 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.01 Total: -21.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.65 -7.92 -41.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068814306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.626 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds