Wall clock time and date at job start Mon Mar 30 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.45205 * 109.47400 * 2 1 4 4 C 1.34225 * 117.00338 * 179.97438 * 3 2 1 5 5 O 1.20827 * 119.99741 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00075 * 179.97438 * 4 3 2 7 7 C 1.50708 * 109.47211 * 180.02562 * 6 4 3 8 8 O 1.20758 * 119.99872 * 359.97438 * 7 6 4 9 9 C 1.50702 * 119.99985 * 180.02562 * 7 6 4 10 10 N 1.46891 * 109.46943 * 179.97438 * 9 7 6 11 11 C 1.46895 * 111.00296 * 189.99772 * 10 9 7 12 12 C 1.50697 * 109.47587 * 162.97208 * 11 10 9 13 13 H 1.08001 * 119.99719 * 4.65684 * 12 11 10 14 14 C 1.37872 * 120.00140 * 184.65242 * 12 11 10 15 15 N 1.31514 * 120.00422 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00277 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47056 * 90.00020 * 16 14 12 18 18 H 1.48500 * 109.47403 * 210.00260 * 16 14 12 19 19 H 1.48500 * 109.47034 * 330.00513 * 16 14 12 20 20 C 1.46909 * 110.99804 * 66.04629 * 10 9 7 21 21 C 1.53002 * 117.49485 * 127.07463 * 20 10 9 22 22 C 1.52991 * 117.49905 * 58.45002 * 20 10 9 23 23 H 1.09007 * 109.47118 * 60.00069 * 1 2 3 24 24 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47336 * 299.99981 * 1 2 3 26 26 H 1.08998 * 109.47336 * 240.00019 * 2 1 3 27 27 H 1.09007 * 109.47118 * 119.99931 * 2 1 3 28 28 H 1.08994 * 109.47263 * 60.00438 * 6 4 3 29 29 H 1.08999 * 109.47066 * 299.99991 * 6 4 3 30 30 H 1.08997 * 109.46821 * 299.99921 * 9 7 6 31 31 H 1.09003 * 109.47225 * 59.99575 * 9 7 6 32 32 H 1.09001 * 109.47039 * 282.97450 * 11 10 9 33 33 H 1.09008 * 109.46776 * 42.97096 * 11 10 9 34 34 H 0.96997 * 120.00837 * 179.97438 * 15 14 12 35 35 H 1.09000 * 115.54673 * 272.77952 * 20 10 9 36 36 H 1.08990 * 117.50092 * 359.97438 * 21 20 10 37 37 H 1.09006 * 117.49247 * 145.02271 * 21 20 10 38 38 H 1.08995 * 117.50287 * 214.97648 * 22 20 10 39 39 H 1.09000 * 117.49820 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4257 2.8585 0.0001 8 8 5.9739 1.7826 0.0011 9 6 6.2464 4.1224 0.0002 10 7 7.6746 3.7788 0.0010 11 6 8.5023 4.9687 0.2392 12 6 9.8892 4.5427 0.6465 13 1 10.1537 3.4956 0.6484 14 6 10.8204 5.4896 1.0168 15 7 10.4983 6.7647 1.0149 16 14 12.5394 4.9615 1.5224 17 1 13.4183 4.9254 0.3259 18 1 13.0847 5.9290 2.5082 19 1 12.4819 3.6100 2.1351 20 6 8.0567 3.1140 -1.2521 21 6 9.2426 3.6934 -2.0261 22 6 7.8194 3.8763 -2.5572 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.5844 3.4700 0.8895 29 1 3.5851 3.4690 -0.8905 30 1 6.0134 4.7070 -0.8898 31 1 6.0133 4.7070 0.8902 32 1 8.5578 5.5614 -0.6739 33 1 8.0578 5.5672 1.0344 34 1 11.1533 7.4309 1.2757 35 1 7.9239 2.0322 -1.2698 36 1 9.7388 4.5680 -1.6058 37 1 9.8902 2.9927 -2.5531 38 1 7.5308 3.2962 -3.4336 39 1 7.3793 4.8710 -2.4861 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068814306.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:01 Heat of formation + Delta-G solvation = -100.603050 kcal Electronic energy + Delta-G solvation = -20675.626702 eV Core-core repulsion = 17391.415974 eV Total energy + Delta-G solvation = -3284.210728 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76051 -40.54009 -39.09766 -37.45687 -35.01144 -34.08861 -33.02878 -31.86507 -29.84241 -27.05512 -24.63310 -24.35881 -23.14191 -22.50035 -21.04588 -20.02838 -18.76222 -18.31900 -17.87593 -17.61777 -17.25228 -16.88675 -16.28957 -16.18677 -15.62023 -15.27382 -14.84761 -14.60181 -14.29746 -13.97999 -13.69659 -13.55873 -13.34208 -13.11194 -12.79673 -12.74531 -12.67632 -12.61329 -12.48527 -12.02201 -11.83404 -11.58945 -11.50966 -11.50426 -11.30926 -10.93068 -10.57166 -10.25658 -8.90373 -8.16082 -6.21224 1.14845 1.22701 1.40842 1.42023 1.53206 1.57223 2.42299 2.90664 3.03084 3.15844 3.42684 3.63078 4.00523 4.08787 4.10809 4.16911 4.22147 4.33086 4.35110 4.37487 4.53467 4.55460 4.60917 4.77399 4.89253 4.94202 5.05198 5.08419 5.16700 5.23818 5.30559 5.48212 5.58840 5.71253 6.10146 6.38877 6.55915 6.73443 6.88042 6.91509 7.45014 8.93531 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036999 B = 0.003632 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.596298 B = 7708.322863 C = 7847.660303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.454 3.546 5 O -0.521 6.521 6 C -0.153 4.153 7 C 0.353 3.647 8 O -0.444 6.444 9 C 0.007 3.993 10 N -0.517 5.517 11 C 0.206 3.794 12 C -0.503 4.503 13 H 0.049 0.951 14 C 0.008 3.992 15 N -0.930 5.930 16 Si 0.955 3.045 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.274 1.274 20 C 0.028 3.972 21 C -0.187 4.187 22 C -0.200 4.200 23 H 0.072 0.928 24 H 0.096 0.904 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.174 0.826 29 H 0.176 0.824 30 H 0.086 0.914 31 H 0.118 0.882 32 H -0.015 1.015 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.225 -6.044 -4.657 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.276 6.276 4 C 0.297 3.703 5 O -0.408 6.408 6 C -0.190 4.190 7 C 0.225 3.775 8 O -0.315 6.315 9 C -0.121 4.121 10 N -0.240 5.240 11 C 0.081 3.919 12 C -0.542 4.542 13 H 0.067 0.933 14 C -0.190 4.190 15 N -0.571 5.571 16 Si 0.781 3.219 17 H -0.199 1.199 18 H -0.207 1.207 19 H -0.199 1.199 20 C -0.081 4.081 21 C -0.224 4.224 22 C -0.239 4.239 23 H 0.091 0.909 24 H 0.115 0.885 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.192 0.808 29 H 0.193 0.807 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.003 0.997 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.579 -7.119 -4.202 21.252 hybrid contribution 1.143 0.298 -0.216 1.201 sum -18.435 -6.821 -4.418 20.147 Atomic orbital electron populations 1.21809 0.89995 1.04302 1.03943 1.23244 0.97259 0.79506 1.02123 1.86489 1.23665 1.33369 1.84043 1.23870 0.80850 0.93054 0.72485 1.90816 1.60837 1.44229 1.44958 1.21929 0.93176 0.92142 1.11745 1.24601 0.90882 0.90275 0.71709 1.90516 1.74951 1.32299 1.33746 1.22608 0.88830 0.96105 1.04585 1.61815 1.02289 1.28040 1.31858 1.19518 0.91888 0.86331 0.94203 1.21291 0.96656 0.92938 1.43279 0.93301 1.25660 1.02429 0.94883 0.95978 1.70027 1.36174 1.00909 1.49959 0.85590 0.80149 0.77927 0.78214 1.19940 1.20670 1.19940 1.22550 1.03251 0.96922 0.85359 1.23366 0.91690 1.04367 1.02962 1.23374 0.99847 1.01999 0.98698 0.90932 0.88493 0.91017 0.91854 0.91999 0.80841 0.80676 0.89672 0.86401 0.99716 0.96851 0.92763 0.87932 0.88348 0.88766 0.87325 0.89223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.05 0.92 6.19 71.98 0.45 1.37 16 3 O -0.36 -7.35 10.22 -51.37 -0.52 -7.88 16 4 C 0.45 11.40 7.95 71.23 0.57 11.97 16 5 O -0.52 -18.49 13.94 29.72 0.41 -18.07 16 6 C -0.15 -2.70 6.23 29.10 0.18 -2.52 16 7 C 0.35 10.40 6.92 29.10 0.20 10.60 16 8 O -0.44 -17.97 12.60 21.99 0.28 -17.69 16 9 C 0.01 0.21 5.27 85.56 0.45 0.66 16 10 N -0.52 -22.40 4.41 -880.08 -3.88 -26.29 16 11 C 0.21 10.42 4.27 85.56 0.37 10.79 16 12 C -0.50 -28.27 6.87 25.60 0.18 -28.09 16 13 H 0.05 2.85 7.80 -2.91 -0.02 2.83 16 14 C 0.01 0.48 5.46 84.65 0.46 0.94 16 15 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 16 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 17 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 20 C 0.03 1.16 5.03 44.91 0.23 1.39 16 21 C -0.19 -7.63 8.87 30.60 0.27 -7.36 16 22 C -0.20 -6.78 9.27 30.59 0.28 -6.49 16 23 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 24 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 1.18 8.13 -2.39 -0.02 1.16 16 27 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 28 H 0.17 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.18 1.68 8.14 -2.39 -0.02 1.67 16 30 H 0.09 2.26 6.83 -2.39 -0.02 2.24 16 31 H 0.12 3.31 7.85 -2.39 -0.02 3.29 16 32 H -0.01 -0.77 6.04 -2.39 -0.01 -0.79 16 33 H 0.01 0.72 7.79 -2.38 -0.02 0.70 16 34 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.10 4.43 7.18 -2.39 -0.02 4.41 16 36 H 0.10 4.79 4.91 -2.39 -0.01 4.77 16 37 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 38 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.09 2.96 7.14 -2.39 -0.02 2.94 16 Total: -1.00 -76.01 325.06 4.01 -72.00 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.04 Total: 12.43 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 4.37 Total: -7.49 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.60 Total: -80.22 kcal Atomic # 8 Polarization: -43.81 SS G_CDS: 0.17 Total: -43.64 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -76.01 4.01 -72.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068814306.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.601 kcal (2) G-P(sol) polarization free energy of solvation -76.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds