Wall clock time and date at job start Mon Mar 30 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47267 * 2 1 4 4 C 1.46901 * 111.00308 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47259 * 180.02562 * 4 3 2 6 6 C 1.33318 * 122.71182 * 94.97475 * 5 4 3 7 7 S 1.76157 * 108.09844 * 179.97438 * 6 5 4 8 8 C 1.70962 * 90.35776 * 359.97438 * 7 6 5 9 9 N 1.38614 * 124.95350 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99725 * 180.02562 * 9 8 7 11 11 C 1.46491 * 119.99740 * 0.02562 * 9 8 7 12 12 H 1.08994 * 109.47507 * 0.02562 * 11 9 8 13 13 C 1.52996 * 109.47168 * 120.00465 * 11 9 8 14 14 C 1.50702 * 109.46957 * 240.00049 * 11 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 N 1.29690 * 110.09996 * 0.24345 * 8 7 6 23 23 H 1.09002 * 109.47210 * 300.00058 * 1 2 3 24 24 H 1.09000 * 109.47344 * 60.00047 * 1 2 3 25 25 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.46604 * 120.00000 * 2 1 3 28 28 H 1.00904 * 110.99889 * 56.04267 * 3 2 1 29 29 H 1.08999 * 109.46952 * 59.99686 * 4 3 2 30 30 H 1.09001 * 109.46887 * 299.99992 * 4 3 2 31 31 H 1.08003 * 125.95458 * 359.97438 * 6 5 4 32 32 H 1.08996 * 109.47568 * 269.99605 * 10 9 8 33 33 H 1.09000 * 109.47136 * 30.00455 * 10 9 8 34 34 H 1.09004 * 109.46570 * 149.99788 * 10 9 8 35 35 H 1.09001 * 109.47094 * 179.97438 * 13 11 9 36 36 H 1.09003 * 109.46851 * 299.99887 * 13 11 9 37 37 H 1.09003 * 109.47532 * 59.99962 * 13 11 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2674 3.5127 1.1178 7 16 4.7563 5.1463 0.6757 8 6 4.4902 4.7907 -0.9752 9 7 4.6825 5.6807 -2.0203 10 6 4.4196 5.2598 -3.3986 11 6 5.1487 7.0422 -1.7464 12 1 5.2889 7.1692 -0.6730 13 6 6.4779 7.2805 -2.4656 14 6 4.1257 8.0324 -2.2405 15 1 3.2188 7.6825 -2.7111 16 6 4.3447 9.3849 -2.0862 17 7 5.4490 9.8110 -1.5128 18 14 3.0732 10.6120 -2.6917 19 1 1.9290 9.8824 -3.2946 20 1 2.5916 11.4301 -1.5497 21 1 3.6878 11.4992 -3.7117 22 7 4.0766 3.5686 -1.1068 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6441 1.9012 0.7814 29 1 3.8647 0.9203 -0.8908 30 1 3.8654 0.9201 0.8892 31 1 4.2294 3.1115 2.1198 32 1 5.3282 4.8400 -3.8300 33 1 3.6325 4.5057 -3.4044 34 1 4.1022 6.1207 -3.9871 35 1 6.8246 8.2937 -2.2621 36 1 7.2178 6.5643 -2.1082 37 1 6.3381 7.1534 -3.5391 38 1 5.6032 10.7626 -1.4045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070682376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:22 Heat of formation + Delta-G solvation = 47.298643 kcal Electronic energy + Delta-G solvation = -18322.661286 eV Core-core repulsion = 15519.909678 eV Total energy + Delta-G solvation = -2802.751608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.23000 -36.95503 -35.94404 -33.04060 -31.26751 -29.55174 -28.36653 -26.39437 -25.38648 -25.29803 -22.42030 -22.08688 -20.12865 -18.83547 -17.44976 -16.45092 -15.94855 -15.38645 -15.20674 -14.91461 -14.37503 -14.17711 -13.81938 -13.21257 -12.89616 -12.69252 -12.51855 -12.28948 -11.92346 -11.74963 -11.64492 -11.33133 -11.25122 -11.10945 -10.96708 -10.76485 -10.60617 -10.29831 -10.23387 -9.56185 -9.01648 -8.82412 -8.58793 -8.49531 -8.37987 -6.71129 -6.19469 -4.30789 1.68748 1.93964 2.54854 3.20202 3.28683 3.32723 3.47201 3.81436 4.30604 4.40962 4.88573 5.03466 5.09829 5.13399 5.36590 5.40688 5.65423 5.73093 5.79194 5.87758 6.04180 6.06402 6.15475 6.22003 6.47297 6.54164 6.67183 6.75042 6.85887 7.00572 7.19392 7.37276 7.48499 7.62928 7.85795 7.99114 8.22319 8.63996 8.80801 9.37072 10.83161 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004550 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.447658 B = 6151.739162 C = 6495.053770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.682 5.682 4 C 0.139 3.861 5 C 0.124 3.876 6 C -0.341 4.341 7 S 0.088 5.912 8 C 0.341 3.659 9 N -0.553 5.553 10 C 0.108 3.892 11 C 0.269 3.731 12 H 0.048 0.952 13 C -0.149 4.149 14 C -0.530 4.530 15 H 0.065 0.935 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.902 3.098 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 N -0.565 5.565 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.342 0.658 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.158 0.842 32 H 0.038 0.962 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.014 0.986 37 H 0.036 0.964 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.164 -13.494 3.670 14.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.314 5.314 4 C 0.008 3.992 5 C -0.010 4.010 6 C -0.485 4.485 7 S 0.338 5.662 8 C -0.030 4.030 9 N -0.268 5.268 10 C -0.038 4.038 11 C 0.169 3.831 12 H 0.066 0.934 13 C -0.208 4.208 14 C -0.569 4.569 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.729 3.271 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 N -0.293 5.293 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.160 0.840 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.176 0.824 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.033 0.967 37 H 0.055 0.945 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.847 -12.368 2.889 13.016 hybrid contribution -0.694 -0.341 0.630 0.997 sum -3.542 -12.708 3.519 13.654 Atomic orbital electron populations 1.21763 0.95027 1.01432 1.02571 1.21909 0.95678 0.89528 1.00279 1.60381 1.07398 1.13124 1.50468 1.20314 0.87440 0.90538 1.00942 1.19439 0.98508 0.96209 0.86836 1.26067 1.21586 0.98190 1.02616 1.84135 1.68286 1.12487 1.01305 1.23716 0.95489 0.90759 0.93013 1.46913 1.66168 1.11076 1.02628 1.21467 0.99803 1.00389 0.82101 1.19096 0.92683 0.74666 0.96659 0.93432 1.22128 0.96613 1.03026 0.99030 1.21360 1.04641 0.90492 1.40396 0.91643 1.24895 0.95737 0.98238 0.94692 1.69872 1.24771 1.15202 1.42635 0.86376 0.81304 0.80839 0.78596 1.19616 1.20757 1.20773 1.66260 1.27923 1.04292 1.30779 0.92896 0.91693 0.92363 0.91030 0.95638 0.84043 0.89806 0.94111 0.82433 0.94305 0.91754 0.90471 0.88420 0.96673 0.94493 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.17 37.16 0.38 -0.97 16 2 C 0.06 0.56 6.40 -3.83 -0.02 0.54 16 3 N -0.68 -8.88 6.49 -115.06 -0.75 -9.62 16 4 C 0.14 1.91 6.12 -4.97 -0.03 1.88 16 5 C 0.12 2.15 6.25 -84.18 -0.53 1.63 16 6 C -0.34 -5.66 11.08 29.01 0.32 -5.33 16 7 S 0.09 1.69 21.38 -107.50 -2.30 -0.61 16 8 C 0.34 7.30 7.74 -87.67 -0.68 6.62 16 9 N -0.55 -12.25 2.86 -177.61 -0.51 -12.76 16 10 C 0.11 2.11 9.55 59.85 0.57 2.68 16 11 C 0.27 6.51 2.66 -69.09 -0.18 6.33 16 12 H 0.05 1.23 6.34 -51.93 -0.33 0.90 16 13 C -0.15 -3.44 8.97 37.16 0.33 -3.11 16 14 C -0.53 -13.83 7.98 -34.44 -0.27 -14.10 16 15 H 0.07 1.73 7.33 -52.49 -0.38 1.35 16 16 C 0.07 1.76 5.31 -17.82 -0.09 1.67 16 17 N -0.89 -23.77 11.33 55.43 0.63 -23.14 16 18 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 N -0.56 -11.49 9.80 -11.36 -0.11 -11.61 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.34 4.28 8.72 -39.29 -0.34 3.94 16 29 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.04 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.16 2.14 8.06 -52.48 -0.42 1.71 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.23 7.61 -51.93 -0.40 0.84 16 34 H 0.08 1.51 7.02 -51.93 -0.36 1.15 16 35 H 0.10 2.44 6.08 -51.93 -0.32 2.12 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.04 0.81 7.67 -51.93 -0.40 0.41 16 38 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -27.78 325.36 -9.25 -37.04 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -5.89 Total: 2.54 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.21 Total: -2.18 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.74 Total: -57.12 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.30 Total: -0.61 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.78 -9.25 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070682376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.335 kcal (2) G-P(sol) polarization free energy of solvation -27.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds