Wall clock time and date at job start Mon Mar 30 2020 04:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46893 * 109.47267 * 2 1 4 4 C 1.46901 * 111.00308 * 180.02562 * 3 2 1 5 5 C 1.50703 * 109.47259 * 180.02562 * 4 3 2 6 6 C 1.33318 * 122.71182 * 94.97475 * 5 4 3 7 7 S 1.76157 * 108.09844 * 179.97438 * 6 5 4 8 8 C 1.70962 * 90.35776 * 359.97438 * 7 6 5 9 9 N 1.38614 * 124.95350 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99725 * 180.02562 * 9 8 7 11 11 C 1.46491 * 119.99740 * 0.02562 * 9 8 7 12 12 H 1.08994 * 109.47507 * 0.02562 * 11 9 8 13 13 C 1.52996 * 109.47168 * 120.00465 * 11 9 8 14 14 C 1.50702 * 109.46957 * 240.00049 * 11 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 9 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 11 9 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 11 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 11 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 N 1.29690 * 110.09996 * 0.24345 * 8 7 6 23 23 H 1.09002 * 109.47210 * 300.00058 * 1 2 3 24 24 H 1.09000 * 109.47344 * 60.00047 * 1 2 3 25 25 H 1.09002 * 109.47419 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47210 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.46604 * 120.00000 * 2 1 3 28 28 H 1.00904 * 110.99889 * 56.04267 * 3 2 1 29 29 H 1.08999 * 109.46952 * 59.99686 * 4 3 2 30 30 H 1.09001 * 109.46887 * 299.99992 * 4 3 2 31 31 H 1.08003 * 125.95458 * 359.97438 * 6 5 4 32 32 H 1.08996 * 109.47568 * 269.99605 * 10 9 8 33 33 H 1.09000 * 109.47136 * 30.00455 * 10 9 8 34 34 H 1.09004 * 109.46570 * 149.99788 * 10 9 8 35 35 H 1.09001 * 109.47094 * 179.97438 * 13 11 9 36 36 H 1.09003 * 109.46851 * 299.99887 * 13 11 9 37 37 H 1.09003 * 109.47532 * 59.99962 * 13 11 9 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4881 1.4241 -0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.2674 3.5127 1.1178 7 16 4.7563 5.1463 0.6757 8 6 4.4902 4.7907 -0.9752 9 7 4.6825 5.6807 -2.0203 10 6 4.4196 5.2598 -3.3986 11 6 5.1487 7.0422 -1.7464 12 1 5.2889 7.1692 -0.6730 13 6 6.4779 7.2805 -2.4656 14 6 4.1257 8.0324 -2.2405 15 1 3.2188 7.6825 -2.7111 16 6 4.3447 9.3849 -2.0862 17 7 5.4490 9.8110 -1.5128 18 14 3.0732 10.6120 -2.6917 19 1 1.9290 9.8824 -3.2946 20 1 2.5916 11.4301 -1.5497 21 1 3.6878 11.4992 -3.7117 22 7 4.0766 3.5686 -1.1068 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 1.6441 1.9012 0.7814 29 1 3.8647 0.9203 -0.8908 30 1 3.8654 0.9201 0.8892 31 1 4.2294 3.1115 2.1198 32 1 5.3282 4.8400 -3.8300 33 1 3.6325 4.5057 -3.4044 34 1 4.1022 6.1207 -3.9871 35 1 6.8246 8.2937 -2.2621 36 1 7.2178 6.5643 -2.1082 37 1 6.3381 7.1534 -3.5391 38 1 5.6032 10.7626 -1.4045 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070682376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:22 Heat of formation + Delta-G solvation = 30.725365 kcal Electronic energy + Delta-G solvation = -18323.379957 eV Core-core repulsion = 15519.909678 eV Total energy + Delta-G solvation = -2803.470279 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68398 -38.47930 -37.08451 -34.88731 -32.47901 -31.13393 -29.73484 -27.96690 -27.33244 -26.48234 -23.96350 -22.92483 -21.82284 -20.29384 -18.94701 -18.38974 -17.34766 -16.73044 -16.52395 -16.31846 -15.61253 -15.52354 -15.41670 -14.61563 -14.27259 -14.03807 -13.90888 -13.62589 -13.54642 -13.09312 -12.89229 -12.79438 -12.74448 -12.58539 -12.48305 -12.28754 -12.12684 -12.01331 -11.82196 -11.30377 -10.67646 -10.56225 -10.35225 -10.00992 -9.33142 -8.37558 -8.08819 -6.35205 0.22238 0.42838 1.11626 1.40628 1.43773 1.54112 2.04635 2.19526 2.44127 3.09209 3.41725 3.64088 4.21206 4.29093 4.37466 4.45272 4.55421 4.61227 4.63142 4.67522 4.71009 4.82197 4.89348 4.95828 4.98564 5.00287 5.14593 5.26585 5.35027 5.41440 5.59469 5.73014 6.01623 6.08448 6.15847 6.45234 6.51014 6.72378 7.19985 7.37215 8.84522 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.004550 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.447658 B = 6151.739162 C = 6495.053770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.056 3.944 3 N -0.700 5.700 4 C 0.146 3.854 5 C 0.106 3.894 6 C -0.315 4.315 7 S 0.066 5.934 8 C 0.316 3.684 9 N -0.569 5.569 10 C 0.115 3.885 11 C 0.276 3.724 12 H 0.028 0.972 13 C -0.137 4.137 14 C -0.544 4.544 15 H 0.055 0.945 16 C 0.027 3.973 17 N -0.909 5.909 18 Si 0.960 3.040 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.275 1.275 22 N -0.574 5.574 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.343 0.657 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.041 0.959 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.880 -14.908 4.375 16.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 N -0.333 5.333 4 C 0.015 3.985 5 C -0.026 4.026 6 C -0.458 4.458 7 S 0.316 5.684 8 C -0.055 4.055 9 N -0.285 5.285 10 C -0.030 4.030 11 C 0.174 3.826 12 H 0.046 0.954 13 C -0.196 4.196 14 C -0.582 4.582 15 H 0.073 0.927 16 C -0.174 4.174 17 N -0.548 5.548 18 Si 0.785 3.215 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.200 1.200 22 N -0.302 5.302 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.212 0.788 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.060 0.940 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.574 -13.828 3.604 14.730 hybrid contribution -0.496 -0.017 0.499 0.704 sum -4.069 -13.846 4.103 15.003 Atomic orbital electron populations 1.21742 0.94298 1.02475 1.01935 1.21963 0.96229 0.88061 1.00983 1.60356 1.06978 1.15002 1.50948 1.20315 0.88057 0.88102 1.02031 1.20028 0.98698 0.97726 0.86169 1.26433 1.19251 0.96025 1.04080 1.84198 1.68413 1.14953 1.00881 1.23901 0.96888 0.91268 0.93431 1.46738 1.67508 1.10653 1.03567 1.21439 1.00339 1.00027 0.81221 1.18812 0.92671 0.75650 0.95426 0.95438 1.21955 0.96443 1.01993 0.99227 1.21541 1.04783 0.91379 1.40536 0.92699 1.25570 0.97334 0.99671 0.94802 1.69965 1.25949 1.15612 1.43244 0.85480 0.79124 0.78736 0.78150 1.19696 1.20554 1.20024 1.66292 1.27340 1.04102 1.32488 0.92585 0.93252 0.90497 0.91210 0.93895 0.83851 0.90359 0.91282 0.78849 0.93085 0.91753 0.91082 0.90421 0.95624 0.93990 0.92266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 10.17 71.98 0.73 -1.60 16 2 C 0.06 1.00 6.40 86.30 0.55 1.55 16 3 N -0.70 -16.70 6.49 -517.94 -3.36 -20.06 16 4 C 0.15 3.65 6.12 85.56 0.52 4.17 16 5 C 0.11 3.48 6.25 41.40 0.26 3.74 16 6 C -0.32 -9.71 11.08 66.71 0.74 -8.97 16 7 S 0.07 2.52 21.38 -56.49 -1.21 1.31 16 8 C 0.32 13.47 7.74 179.32 1.39 14.86 16 9 N -0.57 -25.40 2.86 -715.83 -2.05 -27.44 16 10 C 0.11 4.50 9.55 127.77 1.22 5.73 16 11 C 0.28 13.56 2.66 44.25 0.12 13.68 16 12 H 0.03 1.47 6.34 -2.39 -0.02 1.46 16 13 C -0.14 -6.40 8.97 71.98 0.65 -5.75 16 14 C -0.54 -28.74 7.98 25.60 0.20 -28.53 16 15 H 0.05 2.95 7.33 -2.91 -0.02 2.93 16 16 C 0.03 1.42 5.31 84.66 0.45 1.87 16 17 N -0.91 -49.15 11.33 21.45 0.24 -48.91 16 18 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 22 N -0.57 -22.94 9.80 -189.86 -1.86 -24.80 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.34 7.83 8.72 -89.69 -0.78 7.05 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.07 1.33 8.10 -2.39 -0.02 1.31 16 31 H 0.19 4.47 8.06 -2.91 -0.02 4.44 16 32 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 2.48 7.61 -2.39 -0.02 2.46 16 34 H 0.07 2.82 7.02 -2.38 -0.02 2.81 16 35 H 0.08 3.94 6.08 -2.39 -0.01 3.92 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.85 7.67 -2.39 -0.02 1.83 16 38 H 0.27 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -58.95 325.36 0.89 -58.06 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.27 Total: 17.10 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.83 Total: 0.74 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -7.02 Total: -121.22 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 2.52 SS G_CDS: -1.21 Total: 1.31 kcal Total: -58.95 0.89 -58.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070682376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.785 kcal (2) G-P(sol) polarization free energy of solvation -58.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds