Wall clock time and date at job start Mon Mar 30 2020 04:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46938 * 2 1 4 4 C 1.46895 * 111.00012 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47187 * 179.97438 * 4 3 2 6 6 C 1.33332 * 122.71029 * 95.02675 * 5 4 3 7 7 S 1.76166 * 108.09747 * 179.74706 * 6 5 4 8 8 C 1.70961 * 90.35544 * 0.30113 * 7 6 5 9 9 N 1.38613 * 124.94801 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.99960 * 179.69687 * 9 8 7 11 11 C 1.46499 * 119.99924 * 359.69646 * 9 8 7 12 12 H 1.08991 * 109.47071 * 0.02562 * 11 9 8 13 13 C 1.53002 * 109.47176 * 239.99570 * 11 9 8 14 14 C 1.50705 * 109.47095 * 120.00349 * 11 9 8 15 15 H 1.07997 * 119.99835 * 5.47508 * 14 11 9 16 16 C 1.37870 * 119.99984 * 185.48459 * 14 11 9 17 17 N 1.31517 * 119.99875 * 9.56755 * 16 14 11 18 18 Si 1.86797 * 120.00062 * 189.57072 * 16 14 11 19 19 H 1.48500 * 109.47603 * 84.99408 * 18 16 14 20 20 H 1.48501 * 109.47358 * 204.99401 * 18 16 14 21 21 H 1.48505 * 109.47194 * 324.99056 * 18 16 14 22 22 N 1.29691 * 110.10202 * 359.69206 * 8 7 6 23 23 H 1.08998 * 109.47557 * 299.99587 * 1 2 3 24 24 H 1.08995 * 109.47343 * 60.00049 * 1 2 3 25 25 H 1.09006 * 109.46976 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47121 * 240.00342 * 2 1 3 27 27 H 1.09005 * 109.46804 * 119.99931 * 2 1 3 28 28 H 1.00902 * 111.00010 * 56.04761 * 3 2 1 29 29 H 1.09003 * 109.47126 * 60.00223 * 4 3 2 30 30 H 1.09002 * 109.47717 * 300.00150 * 4 3 2 31 31 H 1.07998 * 125.95285 * 359.97438 * 6 5 4 32 32 H 1.09008 * 109.47122 * 270.00155 * 10 9 8 33 33 H 1.08994 * 109.46909 * 150.00122 * 10 9 8 34 34 H 1.08996 * 109.46909 * 29.99855 * 10 9 8 35 35 H 1.08993 * 109.47055 * 182.63091 * 13 11 9 36 36 H 1.08999 * 109.47488 * 302.63729 * 13 11 9 37 37 H 1.09000 * 109.46637 * 62.63034 * 13 11 9 38 38 H 0.97011 * 119.99452 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 0.0006 5 6 3.9523 2.8579 0.0000 6 6 4.2673 3.5138 1.1173 7 16 4.7625 5.1450 0.6731 8 6 4.4892 4.7902 -0.9768 9 7 4.6823 5.6792 -2.0227 10 6 4.4197 5.2570 -3.4008 11 6 5.1490 7.0408 -1.7500 12 1 5.2888 7.1688 -0.6767 13 6 4.1111 8.0460 -2.2531 14 6 6.4586 7.2742 -2.4581 15 1 6.8553 6.5205 -3.1221 16 6 7.1505 8.4499 -2.2582 17 7 6.7713 9.2836 -1.3143 18 14 8.6263 8.8587 -3.3278 19 1 8.1649 9.5095 -4.5804 20 1 9.5291 9.7816 -2.5941 21 1 9.3584 7.6099 -3.6595 22 7 4.0805 3.5664 -1.1078 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6441 1.9013 0.7814 29 1 3.8654 0.9202 -0.8892 30 1 3.8647 0.9204 0.8908 31 1 4.2293 3.1135 2.1196 32 1 5.3284 4.8363 -3.8313 33 1 4.1029 6.1174 -3.9902 34 1 3.6324 4.5032 -3.4060 35 1 4.4791 9.0593 -2.0926 36 1 3.9371 7.8869 -3.3173 37 1 3.1774 7.9079 -1.7079 38 1 7.2579 10.1110 -1.1739 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070682379.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:24 Heat of formation + Delta-G solvation = 46.914032 kcal Electronic energy + Delta-G solvation = -18299.907023 eV Core-core repulsion = 15497.138738 eV Total energy + Delta-G solvation = -2802.768286 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.22247 -36.96206 -35.94990 -32.99825 -31.28700 -29.63199 -28.37293 -26.44392 -25.38828 -25.25717 -22.44823 -22.09845 -20.12597 -18.83288 -17.44357 -16.43360 -15.95201 -15.38215 -15.21828 -14.87886 -14.37384 -14.19405 -13.87662 -13.23297 -12.83434 -12.73555 -12.56693 -12.32826 -11.90809 -11.80200 -11.67301 -11.33331 -11.26477 -11.11575 -11.01031 -10.74456 -10.66143 -10.35128 -10.19375 -9.58226 -9.02706 -8.82002 -8.55602 -8.48777 -8.38731 -6.71780 -6.20105 -4.28762 1.70018 1.95313 2.56700 3.21765 3.28680 3.31233 3.48155 3.80475 4.31600 4.40108 4.88195 5.02706 5.09333 5.12640 5.35345 5.41159 5.64718 5.73708 5.80412 5.86446 5.97744 6.04304 6.15055 6.23792 6.41434 6.52820 6.63384 6.70362 6.78906 6.99255 7.13991 7.34488 7.38156 7.64787 7.83951 7.92774 8.22015 8.64990 8.81559 9.37691 10.83832 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.034814 B = 0.004226 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.087272 B = 6623.624431 C = 6820.686655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 N -0.681 5.681 4 C 0.139 3.861 5 C 0.124 3.876 6 C -0.342 4.342 7 S 0.092 5.908 8 C 0.341 3.659 9 N -0.554 5.554 10 C 0.110 3.890 11 C 0.267 3.733 12 H 0.056 0.944 13 C -0.145 4.145 14 C -0.534 4.534 15 H 0.064 0.936 16 C 0.070 3.930 17 N -0.885 5.885 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.565 5.565 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.026 0.974 28 H 0.341 0.659 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.158 0.842 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.080 0.920 36 H 0.039 0.961 37 H 0.020 0.980 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.847 -11.899 3.548 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.313 5.313 4 C 0.007 3.993 5 C -0.010 4.010 6 C -0.485 4.485 7 S 0.342 5.658 8 C -0.030 4.030 9 N -0.269 5.269 10 C -0.035 4.035 11 C 0.167 3.833 12 H 0.073 0.927 13 C -0.204 4.204 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.134 4.134 17 N -0.522 5.522 18 Si 0.726 3.274 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.198 1.198 22 N -0.293 5.293 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.159 0.841 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.176 0.824 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.058 0.942 37 H 0.039 0.961 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.564 -10.766 2.804 13.453 hybrid contribution 0.814 -0.756 0.364 1.169 sum -6.751 -11.522 3.168 13.725 Atomic orbital electron populations 1.21762 0.95042 1.01444 1.02515 1.21916 0.95648 0.89556 1.00327 1.60405 1.07434 1.13122 1.50367 1.20317 0.87375 0.90587 1.01001 1.19425 0.98591 0.96199 0.86812 1.26090 1.21288 0.98490 1.02645 1.84195 1.67681 1.12723 1.01167 1.23696 0.95370 0.90872 0.93048 1.46867 1.66084 1.11391 1.02537 1.21426 1.00162 0.99826 0.82093 1.19104 0.92589 0.73858 0.97749 0.92686 1.22072 0.96763 1.02426 0.99109 1.21268 1.04892 1.03004 1.28056 0.91744 1.24891 0.97497 0.96119 0.94871 1.69946 1.41179 1.11425 1.29636 0.86501 0.82004 0.78440 0.80495 1.20316 1.21087 1.19831 1.66252 1.28202 1.04103 1.30723 0.92908 0.91730 0.92361 0.91012 0.95609 0.84123 0.89782 0.94074 0.82442 0.93704 0.91303 0.91853 0.90084 0.94182 0.96103 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.17 37.16 0.38 -0.92 16 2 C 0.05 0.54 6.40 -3.82 -0.02 0.52 16 3 N -0.68 -8.66 6.49 -115.06 -0.75 -9.41 16 4 C 0.14 1.91 6.12 -4.98 -0.03 1.88 16 5 C 0.12 2.15 6.25 -84.18 -0.53 1.63 16 6 C -0.34 -5.70 11.08 29.02 0.32 -5.38 16 7 S 0.09 1.79 21.38 -107.50 -2.30 -0.51 16 8 C 0.34 7.30 7.74 -87.67 -0.68 6.62 16 9 N -0.55 -12.23 2.86 -177.60 -0.51 -12.74 16 10 C 0.11 2.14 9.74 59.85 0.58 2.72 16 11 C 0.27 6.45 2.53 -69.08 -0.17 6.27 16 12 H 0.06 1.44 6.29 -51.93 -0.33 1.11 16 13 C -0.14 -3.26 9.09 37.16 0.34 -2.92 16 14 C -0.53 -13.95 8.33 -34.44 -0.29 -14.24 16 15 H 0.06 1.71 7.53 -52.49 -0.40 1.31 16 16 C 0.07 1.83 5.18 -17.82 -0.09 1.74 16 17 N -0.88 -23.93 12.16 55.43 0.67 -23.25 16 18 Si 0.90 20.46 29.55 -169.99 -5.02 15.44 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 N -0.56 -11.50 9.80 -11.36 -0.11 -11.61 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.34 4.12 8.72 -39.29 -0.34 3.78 16 29 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.04 0.48 8.10 -51.93 -0.42 0.06 16 31 H 0.16 2.15 8.06 -52.49 -0.42 1.73 16 32 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 33 H 0.07 1.26 6.38 -51.93 -0.33 0.93 16 34 H 0.06 1.17 7.62 -51.93 -0.40 0.78 16 35 H 0.08 1.96 6.85 -51.93 -0.36 1.61 16 36 H 0.04 0.84 6.56 -51.93 -0.34 0.50 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -27.98 325.71 -9.14 -37.12 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.85 Total: 2.12 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -0.19 Total: -2.07 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.69 Total: -57.02 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.30 Total: -0.51 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.98 -9.14 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070682379.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.038 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds