Wall clock time and date at job start Mon Mar 30 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47349 * 2 1 4 4 C 1.46496 * 120.00184 * 270.00212 * 3 2 1 5 5 C 1.50700 * 109.47016 * 269.99954 * 4 3 2 6 6 H 1.08000 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00256 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99900 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00301 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47159 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47383 * 119.99533 * 9 7 5 12 12 H 1.48501 * 109.47499 * 239.99599 * 9 7 5 13 13 C 1.34779 * 120.00080 * 89.99279 * 3 2 1 14 14 O 1.21283 * 120.00304 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99619 * 359.73472 * 13 3 2 16 16 H 1.08995 * 115.55372 * 34.59675 * 15 13 3 17 17 C 1.53002 * 117.49537 * 248.88801 * 15 13 3 18 18 H 1.08999 * 117.49616 * 145.01889 * 17 15 13 19 19 C 1.50696 * 117.49877 * 0.02562 * 17 15 13 20 20 O 1.20829 * 120.00166 * 239.20513 * 19 17 15 21 21 O 1.34228 * 120.00412 * 59.20661 * 19 17 15 22 22 C 1.52994 * 59.99988 * 252.51316 * 17 15 13 23 23 C 1.53000 * 117.49780 * 252.50806 * 22 17 15 24 24 C 1.53006 * 117.49650 * 107.49459 * 22 17 15 25 25 H 1.09004 * 109.47742 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.47229 * 59.99980 * 1 2 3 27 27 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47285 * 240.00192 * 2 1 3 29 29 H 1.09002 * 109.46787 * 119.99896 * 2 1 3 30 30 H 1.09007 * 109.47207 * 29.99251 * 4 3 2 31 31 H 1.09000 * 109.47304 * 149.99461 * 4 3 2 32 32 H 0.96999 * 120.00169 * 180.02562 * 8 7 5 33 33 H 0.96700 * 117.00632 * 180.02562 * 21 19 17 34 34 H 1.08997 * 109.46999 * 128.62680 * 23 22 17 35 35 H 1.09005 * 109.47162 * 248.62099 * 23 22 17 36 36 H 1.08998 * 109.47175 * 8.62685 * 23 22 17 37 37 H 1.08995 * 109.47173 * 346.18546 * 24 22 17 38 38 H 1.08994 * 109.47116 * 106.18773 * 24 22 17 39 39 H 1.09004 * 109.46460 * 226.18491 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0975 -3.4162 10 1 6.6014 1.2422 -2.4158 11 1 5.9218 1.4189 -4.7371 12 1 6.6211 3.3988 -3.5240 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9858 1.3082 2.4723 16 1 2.1958 0.2387 2.4761 17 6 0.8155 1.8018 3.3254 18 1 0.2552 1.0569 3.8904 19 6 0.0078 2.9587 2.7960 20 8 -0.0799 3.9784 3.4382 21 8 -0.6142 2.8565 1.6109 22 6 2.2539 2.0854 3.7626 23 6 2.7959 1.3017 4.9597 24 6 2.7626 3.5223 3.6293 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.6755 3.5171 -4.4434 33 1 -1.1201 3.6248 1.3128 34 1 3.7500 0.8465 4.6941 35 1 2.9382 1.9781 5.8025 36 1 2.0857 0.5221 5.2353 37 1 2.0770 4.0938 3.0036 38 1 2.8208 3.9801 4.6166 39 1 3.7523 3.5163 3.1725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085413559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:07 Heat of formation + Delta-G solvation = -102.771736 kcal Electronic energy + Delta-G solvation = -22054.184312 eV Core-core repulsion = 18769.879542 eV Total energy + Delta-G solvation = -3284.304770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84560 -39.04102 -37.10183 -35.81538 -35.17294 -32.76517 -30.03539 -29.80357 -27.45613 -27.27234 -25.28051 -23.20420 -22.89259 -21.24068 -19.20121 -18.20323 -17.55953 -17.05764 -16.36613 -15.87463 -15.66235 -15.17600 -14.31355 -14.12627 -13.77757 -13.65310 -13.48960 -13.19739 -12.79263 -12.59259 -12.33327 -12.12262 -12.02146 -11.73849 -11.58704 -11.42516 -11.22802 -11.11121 -10.85675 -10.67025 -10.55787 -10.41319 -10.11747 -10.06532 -9.75774 -9.59064 -8.73271 -8.43271 -7.61363 -6.03984 -4.08537 2.31666 2.92291 3.13313 3.29557 3.37360 3.41312 3.75175 3.98856 4.44377 4.55982 4.71458 4.79010 5.08191 5.20835 5.30507 5.42237 5.45939 5.55474 5.62671 5.68430 5.75053 5.92106 5.95567 6.05253 6.14580 6.22265 6.32528 6.36472 6.62175 6.64227 6.85623 7.09474 7.46611 7.58146 7.93053 8.06357 8.24499 8.45631 8.91233 9.11837 9.56751 11.03996 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.006133 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.407991 B = 4564.456585 C = 4861.691420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.107 3.893 3 N -0.584 5.584 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.535 3.465 14 O -0.534 6.534 15 C -0.161 4.161 16 H 0.130 0.870 17 C -0.139 4.139 18 H 0.145 0.855 19 C 0.516 3.484 20 O -0.509 6.509 21 O -0.503 6.503 22 C -0.063 4.063 23 C -0.115 4.115 24 C -0.110 4.110 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.691 -7.344 13.321 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.315 5.315 4 C 0.130 3.870 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.320 3.680 14 O -0.412 6.412 15 C -0.182 4.182 16 H 0.147 0.853 17 C -0.159 4.159 18 H 0.163 0.837 19 C 0.358 3.642 20 O -0.397 6.397 21 O -0.314 6.314 22 C -0.064 4.064 23 C -0.172 4.172 24 C -0.167 4.167 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.279 -6.693 13.405 16.245 hybrid contribution 0.499 0.106 -0.741 0.899 sum -5.781 -6.587 12.664 15.401 Atomic orbital electron populations 1.22202 0.96438 1.00940 1.02972 1.21425 0.93868 0.84137 1.02253 1.48116 1.62806 1.13217 1.07349 1.19242 0.96120 0.93563 0.78066 1.21490 0.96959 1.31728 1.06198 0.92442 1.24933 0.97811 0.94953 0.96428 1.69944 1.35577 1.33555 1.14344 0.86458 0.84710 0.78042 0.78298 1.19817 1.20980 1.20910 1.19138 0.78634 0.86311 0.83876 1.90692 1.46119 1.17740 1.86662 1.22761 1.01676 1.01228 0.92526 0.85274 1.22050 0.90805 0.98487 1.04508 0.83729 1.22135 0.76188 0.87560 0.78341 1.90690 1.59408 1.30800 1.58815 1.84565 1.62493 1.47593 1.36768 1.21698 0.92208 0.98242 0.94204 1.21409 1.01131 0.99220 0.95436 1.21482 1.03003 0.91385 1.00796 0.92025 0.92300 0.92726 0.90253 0.91937 0.95048 0.94004 0.92809 0.73212 0.91239 0.91362 0.92118 0.90535 0.93268 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.15 0.38 -1.89 16 2 C 0.11 1.71 5.95 -4.04 -0.02 1.69 16 3 N -0.58 -12.14 2.46 -175.06 -0.43 -12.57 16 4 C 0.25 6.45 5.16 -5.20 -0.03 6.43 16 5 C -0.52 -14.83 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.53 10.89 6.07 -10.98 -0.07 10.82 16 14 O -0.53 -13.02 12.53 5.56 0.07 -12.95 16 15 C -0.16 -2.39 5.01 -91.77 -0.46 -2.85 16 16 H 0.13 1.57 6.44 -51.93 -0.33 1.24 16 17 C -0.14 -1.85 5.88 -91.78 -0.54 -2.39 16 18 H 0.15 1.39 8.05 -51.93 -0.42 0.97 16 19 C 0.52 8.07 5.93 36.00 0.21 8.28 16 20 O -0.51 -9.15 16.20 -18.75 -0.30 -9.46 16 21 O -0.50 -7.21 11.80 -39.25 -0.46 -7.67 16 22 C -0.06 -0.87 2.70 -154.51 -0.42 -1.29 16 23 C -0.11 -1.14 9.85 37.16 0.37 -0.77 16 24 C -0.11 -1.84 7.53 37.16 0.28 -1.56 16 25 H 0.06 0.83 7.05 -51.93 -0.37 0.46 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 29 H 0.06 0.82 6.00 -51.93 -0.31 0.51 16 30 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.41 4.41 9.10 45.56 0.41 4.82 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.63 7.98 -51.93 -0.41 0.21 16 36 H 0.06 0.48 7.90 -51.93 -0.41 0.07 16 37 H 0.08 1.52 4.48 -51.93 -0.23 1.28 16 38 H 0.05 0.71 8.01 -51.93 -0.42 0.30 16 39 H 0.07 1.28 7.57 -51.93 -0.39 0.89 16 LS Contribution 323.00 15.07 4.87 4.87 Total: -1.00 -34.68 323.00 -6.18 -40.86 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.92 Total: 2.97 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -0.71 Total: 2.95 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.31 Total: -38.44 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.70 Total: -30.08 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.68 -6.18 -40.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085413559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.909 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds