Wall clock time and date at job start Mon Mar 30 2020 04:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46503 * 109.47349 * 2 1 4 4 C 1.46496 * 120.00184 * 270.00212 * 3 2 1 5 5 C 1.50700 * 109.47016 * 269.99954 * 4 3 2 6 6 H 1.08000 * 119.99915 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00256 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99900 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00301 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47159 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47383 * 119.99533 * 9 7 5 12 12 H 1.48501 * 109.47499 * 239.99599 * 9 7 5 13 13 C 1.34779 * 120.00080 * 89.99279 * 3 2 1 14 14 O 1.21283 * 120.00304 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99619 * 359.73472 * 13 3 2 16 16 H 1.08995 * 115.55372 * 34.59675 * 15 13 3 17 17 C 1.53002 * 117.49537 * 248.88801 * 15 13 3 18 18 H 1.08999 * 117.49616 * 145.01889 * 17 15 13 19 19 C 1.50696 * 117.49877 * 0.02562 * 17 15 13 20 20 O 1.20829 * 120.00166 * 239.20513 * 19 17 15 21 21 O 1.34228 * 120.00412 * 59.20661 * 19 17 15 22 22 C 1.52994 * 59.99988 * 252.51316 * 17 15 13 23 23 C 1.53000 * 117.49780 * 252.50806 * 22 17 15 24 24 C 1.53006 * 117.49650 * 107.49459 * 22 17 15 25 25 H 1.09004 * 109.47742 * 299.99959 * 1 2 3 26 26 H 1.09007 * 109.47229 * 59.99980 * 1 2 3 27 27 H 1.08999 * 109.47094 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47285 * 240.00192 * 2 1 3 29 29 H 1.09002 * 109.46787 * 119.99896 * 2 1 3 30 30 H 1.09007 * 109.47207 * 29.99251 * 4 3 2 31 31 H 1.09000 * 109.47304 * 149.99461 * 4 3 2 32 32 H 0.96999 * 120.00169 * 180.02562 * 8 7 5 33 33 H 0.96700 * 117.00632 * 180.02562 * 21 19 17 34 34 H 1.08997 * 109.46999 * 128.62680 * 23 22 17 35 35 H 1.09005 * 109.47162 * 248.62099 * 23 22 17 36 36 H 1.08998 * 109.47175 * 8.62685 * 23 22 17 37 37 H 1.08995 * 109.47173 * 346.18546 * 24 22 17 38 38 H 1.08994 * 109.47116 * 106.18773 * 24 22 17 39 39 H 1.09004 * 109.46460 * 226.18491 * 24 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2308 -1.0957 7 6 4.1494 2.3905 -2.8773 8 7 3.3494 3.1267 -3.6175 9 14 5.9138 2.0975 -3.4162 10 1 6.6014 1.2422 -2.4158 11 1 5.9218 1.4189 -4.7371 12 1 6.6211 3.3988 -3.5240 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9858 1.3082 2.4723 16 1 2.1958 0.2387 2.4761 17 6 0.8155 1.8018 3.3254 18 1 0.2552 1.0569 3.8904 19 6 0.0078 2.9587 2.7960 20 8 -0.0799 3.9784 3.4382 21 8 -0.6142 2.8565 1.6109 22 6 2.2539 2.0854 3.7626 23 6 2.7959 1.3017 4.9597 24 6 2.7626 3.5223 3.6293 25 1 -0.3635 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1411 -1.1383 32 1 3.6755 3.5171 -4.4434 33 1 -1.1201 3.6248 1.3128 34 1 3.7500 0.8465 4.6941 35 1 2.9382 1.9781 5.8025 36 1 2.0857 0.5221 5.2353 37 1 2.0770 4.0938 3.0036 38 1 2.8208 3.9801 4.6166 39 1 3.7523 3.5163 3.1725 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085413559.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:06 Heat of formation + Delta-G solvation = -126.781896 kcal Electronic energy + Delta-G solvation = -22055.225470 eV Core-core repulsion = 18769.879542 eV Total energy + Delta-G solvation = -3285.345928 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.10190 -40.45794 -38.40350 -37.06225 -36.79201 -34.87643 -31.56757 -30.90271 -29.19733 -28.39819 -26.74055 -24.95804 -24.20096 -22.65194 -20.40560 -19.51185 -18.89282 -18.65849 -18.25333 -17.19327 -17.13407 -16.72796 -16.15365 -15.49910 -15.15801 -14.79148 -14.56957 -14.49085 -14.34306 -14.03854 -13.69847 -13.55549 -13.25867 -13.21375 -13.06145 -12.88415 -12.65271 -12.57031 -12.49090 -12.22557 -12.14421 -11.80290 -11.68283 -11.62286 -11.23170 -10.86789 -10.64972 -10.34009 -9.36205 -8.22530 -6.37507 1.11283 1.34947 1.37477 1.49087 1.62269 1.97265 2.30269 2.40835 2.71022 3.06720 3.40969 3.54204 3.68093 3.99541 4.13669 4.29039 4.38197 4.51959 4.57348 4.63888 4.81426 4.87086 4.94898 4.99866 5.07443 5.08392 5.11046 5.11993 5.25313 5.33033 5.45769 5.52720 5.58402 5.61769 5.90423 6.07539 6.71305 6.86133 6.91479 7.28997 7.54389 8.84317 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.021265 B = 0.006133 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.407991 B = 4564.456585 C = 4861.691420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.100 3.900 3 N -0.591 5.591 4 C 0.268 3.732 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.967 3.033 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.524 3.476 14 O -0.588 6.588 15 C -0.163 4.163 16 H 0.170 0.830 17 C -0.123 4.123 18 H 0.198 0.802 19 C 0.507 3.493 20 O -0.541 6.541 21 O -0.508 6.508 22 C -0.065 4.065 23 C -0.108 4.108 24 C -0.108 4.108 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.018 0.982 31 H -0.008 1.008 32 H 0.266 0.734 33 H 0.420 0.580 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.065 0.935 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.517 -10.472 15.286 19.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.023 4.023 3 N -0.320 5.320 4 C 0.147 3.853 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.312 3.688 14 O -0.469 6.469 15 C -0.184 4.184 16 H 0.187 0.813 17 C -0.141 4.141 18 H 0.215 0.785 19 C 0.351 3.649 20 O -0.432 6.432 21 O -0.320 6.320 22 C -0.066 4.066 23 C -0.165 4.165 24 C -0.165 4.165 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.121 0.879 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.075 0.925 33 H 0.280 0.720 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.134 -9.870 15.374 19.272 hybrid contribution 0.394 1.171 -1.392 1.861 sum -5.740 -8.699 13.982 17.439 Atomic orbital electron populations 1.22115 0.94463 1.02975 1.01954 1.21771 0.95471 0.81354 1.03663 1.48119 1.63072 1.15025 1.05832 1.18612 0.95017 0.91271 0.80446 1.21770 0.97935 1.31745 1.06419 0.92789 1.25866 1.02363 0.94522 0.96503 1.70067 1.37711 1.34380 1.14843 0.85378 0.79069 0.77953 0.78477 1.18938 1.19365 1.20975 1.20114 0.77241 0.85925 0.85475 1.90677 1.48261 1.20348 1.87660 1.22696 1.03670 1.02555 0.89453 0.81287 1.22398 0.90410 0.98024 1.03311 0.78534 1.22792 0.75945 0.88014 0.78136 1.90675 1.60637 1.32142 1.59708 1.84545 1.62547 1.48389 1.36522 1.21872 0.92949 0.96581 0.95198 1.21453 1.02074 0.99600 0.93343 1.21362 1.00772 0.93846 1.00560 0.91461 0.94908 0.89049 0.91373 0.87935 0.96352 0.98940 0.92494 0.71967 0.90676 0.90731 0.88738 0.94294 0.91570 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.98 5.95 86.38 0.51 3.49 16 3 N -0.59 -24.79 2.46 -826.15 -2.03 -26.82 16 4 C 0.27 14.60 5.16 85.63 0.44 15.04 16 5 C -0.54 -31.41 9.39 25.60 0.24 -31.17 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 9 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.52 21.46 6.07 87.66 0.53 21.99 16 14 O -0.59 -30.19 12.53 -3.04 -0.04 -30.23 16 15 C -0.16 -4.39 5.01 -11.54 -0.06 -4.45 16 16 H 0.17 3.17 6.44 -2.39 -0.02 3.15 16 17 C -0.12 -2.84 5.88 -11.54 -0.07 -2.91 16 18 H 0.20 2.50 8.05 -2.39 -0.02 2.48 16 19 C 0.51 15.50 5.93 71.23 0.42 15.92 16 20 O -0.54 -19.65 16.20 21.96 0.36 -19.29 16 21 O -0.51 -14.55 11.80 -51.40 -0.61 -15.16 16 22 C -0.07 -1.64 2.70 -52.18 -0.14 -1.78 16 23 C -0.11 -1.64 9.85 71.98 0.71 -0.93 16 24 C -0.11 -3.67 7.53 71.98 0.54 -3.13 16 25 H 0.07 1.61 7.05 -2.38 -0.02 1.59 16 26 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.61 16 28 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 29 H 0.10 2.25 6.00 -2.39 -0.01 2.23 16 30 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 31 H -0.01 -0.48 7.42 -2.39 -0.02 -0.50 16 32 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 33 H 0.42 9.49 9.10 -74.06 -0.67 8.82 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.07 7.98 -2.38 -0.02 1.05 16 36 H 0.09 0.85 7.90 -2.39 -0.02 0.83 16 37 H 0.04 1.60 4.48 -2.39 -0.01 1.59 16 38 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 39 H 0.05 1.74 7.57 -2.39 -0.02 1.72 16 Total: -1.00 -81.63 323.00 4.71 -76.92 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.39 Total: 14.21 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.33 Total: 9.74 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.74 Total: -83.59 kcal Atomic # 8 Polarization: -64.39 SS G_CDS: -0.29 Total: -64.68 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -81.63 4.71 -76.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085413559.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.864 kcal (2) G-P(sol) polarization free energy of solvation -81.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds