Wall clock time and date at job start Mon Mar 30 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46506 * 109.47409 * 2 1 4 4 C 1.46499 * 120.00224 * 270.00214 * 3 2 1 5 5 C 1.50691 * 109.46939 * 269.99590 * 4 3 2 6 6 H 1.08001 * 120.00491 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99946 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99778 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99945 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47390 * 90.00190 * 9 7 5 11 11 H 1.48500 * 109.46871 * 209.99834 * 9 7 5 12 12 H 1.48495 * 109.47284 * 329.99827 * 9 7 5 13 13 C 1.34774 * 119.99621 * 89.99895 * 3 2 1 14 14 O 1.21287 * 120.00140 * 180.02562 * 13 3 2 15 15 C 1.50700 * 120.00194 * 359.72673 * 13 3 2 16 16 H 1.09000 * 115.55287 * 325.85767 * 15 13 3 17 17 C 1.52999 * 117.50023 * 111.53217 * 15 13 3 18 18 H 1.09007 * 117.49651 * 359.97096 * 17 15 13 19 19 C 1.50699 * 117.49961 * 214.98093 * 17 15 13 20 20 O 1.20825 * 120.00003 * 356.39544 * 19 17 15 21 21 O 1.34230 * 120.00065 * 176.39155 * 19 17 15 22 22 C 1.53009 * 117.49877 * 180.19047 * 15 13 3 23 23 C 1.52993 * 117.49625 * 359.97438 * 22 15 13 24 24 C 1.52997 * 117.49576 * 145.01977 * 22 15 13 25 25 H 1.09002 * 109.47455 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47412 * 300.00246 * 1 2 3 27 27 H 1.09003 * 109.47468 * 59.99679 * 1 2 3 28 28 H 1.09004 * 109.47499 * 240.00489 * 2 1 3 29 29 H 1.08998 * 109.47025 * 120.00176 * 2 1 3 30 30 H 1.09000 * 109.46865 * 29.99815 * 4 3 2 31 31 H 1.08995 * 109.46999 * 149.99643 * 4 3 2 32 32 H 0.96998 * 119.99757 * 180.02562 * 8 7 5 33 33 H 0.96706 * 116.99523 * 179.97438 * 21 19 17 34 34 H 1.08998 * 109.47293 * 60.00435 * 23 22 15 35 35 H 1.09007 * 109.46688 * 180.02562 * 23 22 15 36 36 H 1.09002 * 109.47573 * 300.00139 * 23 22 15 37 37 H 1.09000 * 109.47095 * 65.79100 * 24 22 15 38 38 H 1.09002 * 109.46556 * 185.78133 * 24 22 15 39 39 H 1.08992 * 109.47459 * 305.78655 * 24 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3426 1.2303 -1.0961 7 6 4.1494 2.3907 -2.8774 8 7 3.3494 3.1267 -3.6174 9 14 5.9134 2.0965 -3.4169 10 1 5.9762 0.8761 -4.2606 11 1 6.3930 3.2642 -4.1991 12 1 6.7736 1.9156 -2.2200 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1673 15 6 1.9859 1.3082 2.4723 16 1 1.1493 0.6094 2.4712 17 6 3.1987 0.9566 3.3362 18 1 4.1827 1.2373 2.9603 19 6 3.1450 -0.3290 4.1207 20 8 2.1441 -1.0055 4.1042 21 8 4.2093 -0.7226 4.8378 22 6 2.2560 2.0847 3.7628 23 6 2.7670 3.5205 3.6293 24 6 1.3314 1.8204 4.9528 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8932 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 3.6755 3.5172 -4.4433 33 1 4.1273 -1.5540 5.3248 34 1 2.0368 4.1167 3.0820 35 1 2.9146 3.9473 4.6215 36 1 3.7140 3.5206 3.0896 37 1 1.4664 0.7951 5.2971 38 1 1.5739 2.5101 5.7613 39 1 0.2954 1.9679 4.6478 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085413561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:43:08 Heat of formation + Delta-G solvation = -129.114656 kcal Electronic energy + Delta-G solvation = -21558.637901 eV Core-core repulsion = 18273.190816 eV Total energy + Delta-G solvation = -3285.447084 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.09792 -40.68889 -38.46251 -37.11615 -36.74479 -34.90167 -31.67882 -30.95409 -29.25096 -28.47194 -26.97646 -24.99873 -24.24175 -22.36874 -20.54651 -19.72685 -19.07121 -18.60306 -18.21430 -17.29166 -17.04027 -16.85837 -16.26199 -15.70923 -15.04528 -14.93487 -14.69806 -14.54744 -14.24779 -14.15068 -13.60909 -13.57160 -13.33152 -13.27537 -13.08290 -12.94513 -12.66814 -12.62506 -12.49992 -12.34554 -12.18788 -11.94587 -11.74624 -11.67478 -11.40125 -11.03272 -10.64387 -10.39500 -9.45646 -8.22897 -6.37549 0.88408 1.35844 1.38465 1.47119 1.50922 1.97907 2.26843 2.43653 2.64542 3.06653 3.40464 3.46464 3.57284 3.93244 4.00835 4.11503 4.28903 4.38660 4.52654 4.57226 4.66572 4.75853 4.91127 4.93965 4.95338 4.98054 5.00826 5.04605 5.20889 5.21355 5.34184 5.49345 5.54176 5.57987 5.84230 6.05720 6.68090 6.76116 6.96363 7.26660 7.44332 8.84204 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.005565 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.650397 B = 5030.151389 C = 5159.917551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.598 5.598 4 C 0.263 3.737 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.966 3.034 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.273 1.273 13 C 0.527 3.473 14 O -0.571 6.571 15 C -0.152 4.152 16 H 0.147 0.853 17 C -0.146 4.146 18 H 0.129 0.871 19 C 0.527 3.473 20 O -0.528 6.528 21 O -0.504 6.504 22 C -0.046 4.046 23 C -0.100 4.100 24 C -0.119 4.119 25 H 0.092 0.908 26 H 0.058 0.942 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.022 0.978 31 H 0.002 0.998 32 H 0.267 0.733 33 H 0.433 0.567 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 -8.327 17.445 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.328 5.328 4 C 0.142 3.858 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.197 1.197 13 C 0.315 3.685 14 O -0.452 6.452 15 C -0.173 4.173 16 H 0.164 0.836 17 C -0.166 4.166 18 H 0.147 0.853 19 C 0.371 3.629 20 O -0.419 6.419 21 O -0.318 6.318 22 C -0.047 4.047 23 C -0.157 4.157 24 C -0.176 4.176 25 H 0.111 0.889 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.040 0.960 31 H 0.020 0.980 32 H 0.076 0.924 33 H 0.296 0.704 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.109 0.891 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.939 -7.477 17.035 18.835 hybrid contribution 0.848 -0.500 -0.790 1.262 sum -2.091 -7.977 16.245 18.218 Atomic orbital electron populations 1.22144 0.94409 1.03451 1.01812 1.21657 0.95462 0.81680 1.03222 1.48226 1.63554 1.14786 1.06282 1.18733 0.95315 0.91678 0.80043 1.21678 0.97796 1.31975 1.06629 0.93025 1.25832 1.02323 0.94443 0.96379 1.70046 1.37742 1.34138 1.14768 0.85435 0.79089 0.78182 0.78233 1.18977 1.20518 1.19739 1.19966 0.77444 0.86099 0.84981 1.90653 1.47452 1.19559 1.87514 1.22502 1.00429 1.04329 0.90003 0.83572 1.21986 0.97703 0.94263 1.02649 0.85347 1.21771 0.80034 0.84999 0.76125 1.90705 1.33538 1.55366 1.62261 1.84474 1.41254 1.46448 1.59585 1.21859 0.96450 0.92390 0.93980 1.21347 1.01041 0.91779 1.01546 1.21554 0.98611 1.02650 0.94752 0.88911 0.92320 0.93631 0.90790 0.89668 0.96038 0.97974 0.92379 0.70445 0.92453 0.89959 0.93513 0.92030 0.89092 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.41 10.12 71.98 0.73 -3.68 16 2 C 0.10 3.44 5.76 86.38 0.50 3.94 16 3 N -0.60 -26.14 2.46 -826.17 -2.03 -28.17 16 4 C 0.26 14.36 5.16 85.63 0.44 14.80 16 5 C -0.54 -31.48 9.39 25.60 0.24 -31.24 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.54 5.46 84.66 0.46 1.00 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 9 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 10 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 C 0.53 22.19 7.44 87.66 0.65 22.84 16 14 O -0.57 -28.34 12.68 -3.05 -0.04 -28.37 16 15 C -0.15 -4.71 4.03 -11.54 -0.05 -4.76 16 16 H 0.15 4.13 6.00 -2.39 -0.01 4.11 16 17 C -0.15 -4.01 5.65 -11.52 -0.07 -4.08 16 18 H 0.13 3.82 8.05 -2.38 -0.02 3.81 16 19 C 0.53 12.34 6.79 71.24 0.48 12.83 16 20 O -0.53 -13.91 15.96 21.97 0.35 -13.56 16 21 O -0.50 -8.72 13.42 -51.41 -0.69 -9.41 16 22 C -0.05 -1.20 2.70 -52.16 -0.14 -1.34 16 23 C -0.10 -2.87 8.09 71.98 0.58 -2.29 16 24 C -0.12 -2.31 9.73 71.98 0.70 -1.61 16 25 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.53 7.43 -2.39 -0.02 1.52 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 2.59 8.07 -2.38 -0.02 2.57 16 29 H 0.09 2.53 6.65 -2.39 -0.02 2.51 16 30 H 0.02 1.20 8.07 -2.39 -0.02 1.18 16 31 H 0.00 0.13 7.42 -2.39 -0.02 0.12 16 32 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.43 3.06 9.10 -74.05 -0.67 2.39 16 34 H 0.06 1.88 7.25 -2.39 -0.02 1.86 16 35 H 0.08 1.77 7.88 -2.38 -0.02 1.75 16 36 H 0.05 1.57 7.02 -2.39 -0.02 1.56 16 37 H 0.06 1.21 5.60 -2.39 -0.01 1.20 16 38 H 0.09 1.38 7.84 -2.39 -0.02 1.36 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.55 325.91 4.83 -68.72 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.39 Total: 13.20 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 4.54 Total: 6.42 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.74 Total: -84.12 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -0.38 Total: -51.34 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.55 4.83 -68.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085413561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.390 kcal (2) G-P(sol) polarization free energy of solvation -73.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds