Wall clock time and date at job start Mon Mar 30 2020 04:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47361 * 240.00026 * 2 1 3 5 5 H 1.07996 * 119.99863 * 239.99596 * 4 2 1 6 6 C 1.37878 * 119.99945 * 59.99914 * 4 2 1 7 7 N 1.31516 * 119.99864 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99931 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47067 * 120.00078 * 8 6 4 11 11 H 1.48503 * 109.46885 * 239.99788 * 8 6 4 12 12 N 1.46505 * 109.47383 * 119.99655 * 2 1 3 13 13 C 1.46501 * 119.99583 * 60.00295 * 12 2 1 14 14 C 1.34768 * 120.00304 * 240.00259 * 12 2 1 15 15 O 1.21288 * 120.00233 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00006 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.55268 * 34.41430 * 16 14 12 18 18 C 1.52999 * 117.49781 * 248.74743 * 16 14 12 19 19 H 1.09002 * 117.50105 * 144.97569 * 18 16 14 20 20 C 1.50697 * 117.50195 * 359.97438 * 18 16 14 21 21 O 1.20826 * 120.00178 * 239.30629 * 20 18 16 22 22 O 1.34229 * 120.00055 * 59.30350 * 20 18 16 23 23 C 1.53002 * 117.49845 * 180.08807 * 16 14 12 24 24 C 1.53001 * 117.49852 * 214.99881 * 23 16 14 25 25 C 1.52996 * 117.50036 * 0.02668 * 23 16 14 26 26 H 1.08996 * 109.47581 * 299.99466 * 1 2 3 27 27 H 1.08994 * 109.47375 * 60.00243 * 1 2 3 28 28 H 1.09008 * 109.46707 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99644 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47212 * 270.00263 * 13 12 2 31 31 H 1.09004 * 109.47378 * 29.99860 * 13 12 2 32 32 H 1.08998 * 109.47032 * 150.00348 * 13 12 2 33 33 H 0.96705 * 117.00181 * 179.97438 * 22 20 18 34 34 H 1.09010 * 109.46693 * 60.00449 * 24 23 16 35 35 H 1.09000 * 109.47100 * 180.02562 * 24 23 16 36 36 H 1.08996 * 109.47466 * 300.00599 * 24 23 16 37 37 H 1.08998 * 109.47716 * 54.88111 * 25 23 16 38 38 H 1.08997 * 109.47647 * 174.88924 * 25 23 16 39 39 H 1.09008 * 109.46996 * 294.88785 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1680 -1.5866 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0858 1.1258 1.8917 16 6 3.2950 -0.7458 3.3141 17 1 3.5229 -1.8040 3.1862 18 6 2.7295 -0.3032 4.6651 19 1 2.5849 -1.0703 5.4259 20 6 1.7137 0.8099 4.6633 21 8 1.9333 1.8292 5.2738 22 8 0.5649 0.6691 3.9834 23 6 4.1686 0.0528 4.2837 24 6 5.2951 -0.6952 4.9996 25 6 4.4652 1.5114 3.9299 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 0.7089 1.1614 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5969 0.4708 32 1 2.4629 -2.5818 1.9864 33 1 -0.0559 1.4100 4.0121 34 1 5.9847 -1.1057 4.2619 35 1 5.8299 -0.0067 5.6538 36 1 4.8730 -1.5061 5.5931 37 1 3.5279 2.0450 3.7723 38 1 5.0164 1.9785 4.7461 39 1 5.0628 1.5501 3.0190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085415017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:11 Heat of formation + Delta-G solvation = -97.814924 kcal Electronic energy + Delta-G solvation = -22031.475359 eV Core-core repulsion = 18747.385533 eV Total energy + Delta-G solvation = -3284.089826 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83618 -39.05800 -37.16828 -35.82851 -35.14908 -32.84095 -30.07100 -29.13695 -27.35940 -26.08266 -25.42596 -25.16745 -22.63083 -20.50777 -19.09369 -18.20762 -17.63444 -17.00418 -16.40787 -15.82172 -15.71504 -15.03888 -14.32045 -14.16205 -13.88630 -13.60329 -13.41624 -12.87369 -12.58163 -12.44763 -12.31280 -12.14710 -11.90125 -11.61961 -11.44583 -11.39524 -11.15077 -11.03324 -10.83586 -10.66488 -10.43237 -10.23778 -10.17593 -10.09027 -9.78344 -9.15867 -8.78646 -8.42021 -7.54614 -6.07708 -4.15598 2.31260 2.90453 3.12054 3.25242 3.33430 3.36163 3.73219 3.99158 4.38758 4.55077 4.71277 4.82261 5.07088 5.22188 5.26475 5.43135 5.52253 5.61066 5.71987 5.82669 5.93717 6.03552 6.12012 6.20240 6.33775 6.40104 6.62011 6.77836 6.83583 6.87796 7.09191 7.44805 7.54909 7.72450 8.02643 8.06361 8.20627 8.54936 8.83351 9.07209 9.51042 10.97556 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.005770 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.427083 B = 4851.410465 C = 5207.845378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.260 3.740 3 H 0.062 0.938 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.580 5.580 13 C 0.084 3.916 14 C 0.532 3.468 15 O -0.545 6.545 16 C -0.161 4.161 17 H 0.131 0.869 18 C -0.139 4.139 19 H 0.146 0.854 20 C 0.516 3.484 21 O -0.509 6.509 22 O -0.503 6.503 23 C -0.062 4.062 24 C -0.115 4.115 25 C -0.109 4.109 26 H 0.012 0.988 27 H 0.091 0.909 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.488 -5.959 13.724 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.160 3.840 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.310 5.310 13 C -0.060 4.060 14 C 0.318 3.682 15 O -0.425 6.425 16 C -0.183 4.183 17 H 0.149 0.851 18 C -0.158 4.158 19 H 0.163 0.837 20 C 0.358 3.642 21 O -0.398 6.398 22 O -0.314 6.314 23 C -0.063 4.063 24 C -0.172 4.172 25 C -0.166 4.166 26 H 0.031 0.969 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.863 -5.286 13.583 14.854 hybrid contribution -0.316 -0.305 -0.885 0.988 sum 2.547 -5.592 12.699 14.107 Atomic orbital electron populations 1.22046 0.98102 0.99360 1.00688 1.18925 0.90934 0.94418 0.79766 0.92034 1.21369 1.31715 1.12992 0.90335 0.92213 1.24894 0.94960 0.94980 0.98967 1.69894 1.36439 1.22617 1.23624 0.86447 0.78596 0.79579 0.82803 1.19827 1.20944 1.20928 1.48097 1.48115 1.11603 1.23146 1.21619 0.98917 0.83282 1.02164 1.19223 0.79237 0.86543 0.83213 1.90673 1.58589 1.16732 1.76487 1.22753 1.04171 1.01511 0.89818 0.85146 1.22056 0.94193 0.99302 1.00257 0.83665 1.22143 0.80750 0.86901 0.74449 1.90686 1.77365 1.29681 1.42018 1.84574 1.29548 1.49237 1.68057 1.21703 0.88829 0.97954 0.97819 1.21410 0.96481 0.99481 0.99823 1.21477 1.03667 0.90999 1.00476 0.96868 0.89052 0.95249 0.92759 0.93625 0.90256 0.92950 0.73192 0.91227 0.91351 0.92101 0.90546 0.93246 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.57 2.64 -69.08 -0.18 6.39 16 3 H 0.06 1.82 6.90 -51.93 -0.36 1.46 16 4 C -0.53 -14.08 7.99 -34.44 -0.28 -14.36 16 5 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.06 11.32 55.43 0.63 -24.44 16 8 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.58 -12.19 2.75 -175.26 -0.48 -12.67 16 13 C 0.08 1.40 9.26 59.85 0.55 1.95 16 14 C 0.53 10.81 6.08 -10.99 -0.07 10.74 16 15 O -0.55 -13.02 12.28 5.55 0.07 -12.95 16 16 C -0.16 -2.41 5.00 -91.77 -0.46 -2.87 16 17 H 0.13 1.59 6.44 -51.93 -0.33 1.25 16 18 C -0.14 -1.87 5.89 -91.74 -0.54 -2.41 16 19 H 0.15 1.42 8.05 -51.93 -0.42 1.00 16 20 C 0.52 8.22 5.93 36.00 0.21 8.43 16 21 O -0.51 -9.20 16.19 -18.75 -0.30 -9.51 16 22 O -0.50 -7.53 12.87 -39.25 -0.51 -8.03 16 23 C -0.06 -0.86 2.70 -154.47 -0.42 -1.28 16 24 C -0.11 -1.13 9.85 37.16 0.37 -0.76 16 25 C -0.11 -1.80 7.53 37.16 0.28 -1.52 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 28 H 0.03 0.64 7.67 -51.92 -0.40 0.25 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 32 H 0.05 0.70 6.00 -51.93 -0.31 0.39 16 33 H 0.41 4.62 9.10 45.56 0.41 5.03 16 34 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 35 H 0.07 0.62 7.98 -51.93 -0.41 0.20 16 36 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 37 H 0.08 1.49 4.48 -51.93 -0.23 1.26 16 38 H 0.05 0.70 8.01 -51.93 -0.42 0.29 16 39 H 0.07 1.24 7.57 -51.92 -0.39 0.85 16 LS Contribution 316.66 15.07 4.77 4.77 Total: -1.00 -32.98 316.66 -5.87 -38.85 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.74 Total: 5.17 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.29 Total: 2.90 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.15 Total: -37.11 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.74 Total: -30.49 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.98 -5.87 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085415017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.967 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds