Wall clock time and date at job start Mon Mar 30 2020 04:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.46995 * 2 1 4 4 C 1.50702 * 109.47361 * 240.00026 * 2 1 3 5 5 H 1.07996 * 119.99863 * 239.99596 * 4 2 1 6 6 C 1.37878 * 119.99945 * 59.99914 * 4 2 1 7 7 N 1.31516 * 119.99864 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99931 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47180 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47067 * 120.00078 * 8 6 4 11 11 H 1.48503 * 109.46885 * 239.99788 * 8 6 4 12 12 N 1.46505 * 109.47383 * 119.99655 * 2 1 3 13 13 C 1.46501 * 119.99583 * 60.00295 * 12 2 1 14 14 C 1.34768 * 120.00304 * 240.00259 * 12 2 1 15 15 O 1.21288 * 120.00233 * 0.02562 * 14 12 2 16 16 C 1.50700 * 120.00006 * 179.97438 * 14 12 2 17 17 H 1.08994 * 115.55268 * 34.41430 * 16 14 12 18 18 C 1.52999 * 117.49781 * 248.74743 * 16 14 12 19 19 H 1.09002 * 117.50105 * 144.97569 * 18 16 14 20 20 C 1.50697 * 117.50195 * 359.97438 * 18 16 14 21 21 O 1.20826 * 120.00178 * 239.30629 * 20 18 16 22 22 O 1.34229 * 120.00055 * 59.30350 * 20 18 16 23 23 C 1.53002 * 117.49845 * 180.08807 * 16 14 12 24 24 C 1.53001 * 117.49852 * 214.99881 * 23 16 14 25 25 C 1.52996 * 117.50036 * 0.02668 * 23 16 14 26 26 H 1.08996 * 109.47581 * 299.99466 * 1 2 3 27 27 H 1.08994 * 109.47375 * 60.00243 * 1 2 3 28 28 H 1.09008 * 109.46707 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99644 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47212 * 270.00263 * 13 12 2 31 31 H 1.09004 * 109.47378 * 29.99860 * 13 12 2 32 32 H 1.08998 * 109.47032 * 150.00348 * 13 12 2 33 33 H 0.96705 * 117.00181 * 179.97438 * 22 20 18 34 34 H 1.09010 * 109.46693 * 60.00449 * 24 23 16 35 35 H 1.09000 * 109.47100 * 180.02562 * 24 23 16 36 36 H 1.08996 * 109.47466 * 300.00599 * 24 23 16 37 37 H 1.08998 * 109.47716 * 54.88111 * 25 23 16 38 38 H 1.08997 * 109.47647 * 174.88924 * 25 23 16 39 39 H 1.09008 * 109.46996 * 294.88785 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 3.1475 -2.2863 -3.6038 10 1 1.1680 -1.5866 -4.8165 11 1 3.1473 -0.1856 -4.8160 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0858 1.1258 1.8917 16 6 3.2950 -0.7458 3.3141 17 1 3.5229 -1.8040 3.1862 18 6 2.7295 -0.3032 4.6651 19 1 2.5849 -1.0703 5.4259 20 6 1.7137 0.8099 4.6633 21 8 1.9333 1.8292 5.2738 22 8 0.5649 0.6691 3.9834 23 6 4.1686 0.0528 4.2837 24 6 5.2951 -0.6952 4.9996 25 6 4.4652 1.5114 3.9299 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 0.7089 1.1614 -3.4844 30 1 0.7376 -2.1444 1.9993 31 1 1.5295 -2.5969 0.4708 32 1 2.4629 -2.5818 1.9864 33 1 -0.0559 1.4100 4.0121 34 1 5.9847 -1.1057 4.2619 35 1 5.8299 -0.0067 5.6538 36 1 4.8730 -1.5061 5.5931 37 1 3.5279 2.0450 3.7723 38 1 5.0164 1.9785 4.7461 39 1 5.0628 1.5501 3.0190 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085415017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:10 Heat of formation + Delta-G solvation = -120.416994 kcal Electronic energy + Delta-G solvation = -22032.455458 eV Core-core repulsion = 18747.385533 eV Total energy + Delta-G solvation = -3285.069925 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.09193 -40.48605 -38.50030 -37.11252 -36.84106 -34.76936 -31.67296 -30.49227 -28.41338 -27.50761 -27.30313 -26.66337 -24.06059 -22.09256 -20.37862 -19.53298 -18.95456 -18.50236 -18.22528 -17.25421 -17.13521 -16.69634 -15.96189 -15.67888 -15.10234 -14.75712 -14.55556 -14.52464 -14.08213 -13.76590 -13.72998 -13.49154 -13.30192 -13.03433 -13.02315 -12.76502 -12.69653 -12.58076 -12.48889 -12.24856 -12.18480 -12.07305 -11.65583 -11.26967 -11.14155 -10.88525 -10.57499 -10.31238 -9.24360 -8.14098 -6.30585 1.09852 1.40657 1.42337 1.53427 1.60088 1.96545 2.31584 2.45190 2.71968 3.14001 3.41321 3.55889 3.69515 4.02363 4.14521 4.37879 4.49617 4.63820 4.67838 4.79976 4.83703 4.87592 4.94514 4.96491 5.06771 5.08922 5.10278 5.13076 5.32522 5.44593 5.49977 5.58601 5.63947 5.70672 6.06893 6.18594 6.78538 6.89620 6.90168 7.34374 7.53547 8.90280 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026103 B = 0.005770 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.427083 B = 4851.410465 C = 5207.845378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.265 3.735 3 H 0.004 0.996 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.589 5.589 13 C 0.080 3.920 14 C 0.519 3.481 15 O -0.595 6.595 16 C -0.164 4.164 17 H 0.171 0.829 18 C -0.125 4.125 19 H 0.197 0.803 20 C 0.507 3.493 21 O -0.540 6.540 22 O -0.510 6.510 23 C -0.063 4.063 24 C -0.108 4.108 25 C -0.108 4.108 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.420 0.580 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -9.229 15.265 18.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.163 3.837 3 H 0.022 0.978 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.213 1.213 12 N -0.318 5.318 13 C -0.062 4.062 14 C 0.308 3.692 15 O -0.477 6.477 16 C -0.185 4.185 17 H 0.188 0.812 18 C -0.144 4.144 19 H 0.214 0.786 20 C 0.351 3.649 21 O -0.431 6.431 22 O -0.322 6.322 23 C -0.064 4.064 24 C -0.165 4.165 25 C -0.165 4.165 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.281 0.719 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.690 -8.599 15.144 17.802 hybrid contribution -0.608 0.827 -1.362 1.705 sum 3.083 -7.772 13.782 16.120 Atomic orbital electron populations 1.21814 0.97201 0.99919 0.99673 1.18462 0.91536 0.91983 0.81701 0.97764 1.21646 1.31656 1.13010 0.91149 0.91901 1.25755 0.95129 0.95649 1.02106 1.70043 1.37537 1.24021 1.24276 0.85406 0.78201 0.78516 0.78881 1.18651 1.20042 1.21343 1.48079 1.48309 1.13348 1.22029 1.21866 1.01361 0.80585 1.02403 1.20182 0.78286 0.86239 0.84468 1.90663 1.60055 1.19201 1.77790 1.22709 1.05315 1.02846 0.87587 0.81199 1.22407 0.92862 0.99035 1.00060 0.78627 1.22814 0.81125 0.87305 0.73692 1.90671 1.77931 1.30996 1.43454 1.84552 1.29844 1.50014 1.67812 1.21878 0.90641 0.96252 0.97647 1.21454 0.95023 1.00033 0.99972 1.21360 1.01504 0.93524 1.00103 0.96076 0.91822 0.93660 0.92753 0.91886 0.91518 0.88825 0.71928 0.90587 0.90698 0.88858 0.94301 0.91560 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.19 8.97 71.98 0.65 -5.55 16 2 C 0.27 13.84 2.64 44.24 0.12 13.95 16 3 H 0.00 0.28 6.90 -2.39 -0.02 0.26 16 4 C -0.54 -29.09 7.99 25.60 0.20 -28.89 16 5 H 0.06 3.29 7.33 -2.91 -0.02 3.27 16 6 C 0.01 0.71 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.54 11.32 21.45 0.24 -53.29 16 8 Si 0.96 43.06 29.54 68.60 2.03 45.09 16 9 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 N -0.59 -24.48 2.75 -826.79 -2.28 -26.75 16 13 C 0.08 2.44 9.26 127.77 1.18 3.62 16 14 C 0.52 21.01 6.08 87.66 0.53 21.54 16 15 O -0.59 -29.77 12.28 -3.05 -0.04 -29.81 16 16 C -0.16 -4.39 5.00 -11.54 -0.06 -4.45 16 17 H 0.17 3.16 6.44 -2.39 -0.02 3.15 16 18 C -0.13 -2.92 5.89 -11.52 -0.07 -2.99 16 19 H 0.20 2.58 8.05 -2.39 -0.02 2.56 16 20 C 0.51 15.67 5.93 71.23 0.42 16.09 16 21 O -0.54 -19.61 16.19 21.96 0.36 -19.26 16 22 O -0.51 -15.01 12.87 -51.40 -0.66 -15.67 16 23 C -0.06 -1.58 2.70 -52.16 -0.14 -1.72 16 24 C -0.11 -1.61 9.85 71.98 0.71 -0.90 16 25 C -0.11 -3.58 7.53 71.98 0.54 -3.04 16 26 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 28 H 0.04 1.99 7.67 -2.38 -0.02 1.98 16 29 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.20 7.02 -2.38 -0.02 2.19 16 32 H 0.09 2.05 6.00 -2.39 -0.01 2.03 16 33 H 0.42 9.70 9.10 -74.05 -0.67 9.02 16 34 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.07 1.05 7.98 -2.39 -0.02 1.03 16 36 H 0.09 0.84 7.90 -2.39 -0.02 0.82 16 37 H 0.04 1.57 4.48 -2.39 -0.01 1.56 16 38 H 0.07 1.88 8.01 -2.39 -0.02 1.86 16 39 H 0.05 1.74 7.57 -2.38 -0.02 1.72 16 Total: -1.00 -76.95 316.66 4.58 -72.36 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.40 Total: 18.50 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 4.54 Total: 8.83 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -2.03 Total: -80.05 kcal Atomic # 8 Polarization: -64.40 SS G_CDS: -0.34 Total: -64.74 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -76.95 4.58 -72.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085415017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.055 kcal (2) G-P(sol) polarization free energy of solvation -76.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds