Wall clock time and date at job start Mon Mar 30 2020 04:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47262 * 2 1 4 4 C 1.50702 * 109.47315 * 239.99410 * 2 1 3 5 5 H 1.07994 * 119.99777 * 240.00288 * 4 2 1 6 6 C 1.37879 * 119.99705 * 59.72853 * 4 2 1 7 7 N 1.31516 * 119.99977 * 0.27697 * 6 4 2 8 8 Si 1.86798 * 119.99977 * 180.27412 * 6 4 2 9 9 H 1.48500 * 109.46981 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47018 * 119.99781 * 8 6 4 11 11 H 1.48496 * 109.47316 * 239.99958 * 8 6 4 12 12 N 1.46504 * 109.46783 * 119.99604 * 2 1 3 13 13 C 1.46507 * 119.99774 * 59.99995 * 12 2 1 14 14 C 1.34773 * 120.00212 * 240.00083 * 12 2 1 15 15 O 1.21287 * 119.99778 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00135 * 180.02562 * 14 12 2 17 17 H 1.08995 * 115.54898 * 325.57810 * 16 14 12 18 18 C 1.53001 * 117.49714 * 111.25184 * 16 14 12 19 19 H 1.08999 * 117.50225 * 359.97438 * 18 16 14 20 20 C 1.50703 * 117.49418 * 214.97945 * 18 16 14 21 21 O 1.20826 * 120.00407 * 356.42186 * 20 18 16 22 22 O 1.34227 * 119.99825 * 176.43026 * 20 18 16 23 23 C 1.53001 * 117.49885 * 179.91041 * 16 14 12 24 24 C 1.53005 * 117.49717 * 0.02562 * 23 16 14 25 25 C 1.53001 * 117.49940 * 145.01944 * 23 16 14 26 26 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47434 * 300.00650 * 1 2 3 28 28 H 1.09003 * 109.46752 * 60.00363 * 1 2 3 29 29 H 0.97000 * 119.99717 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46770 * 90.00309 * 13 12 2 31 31 H 1.08996 * 109.46764 * 209.99546 * 13 12 2 32 32 H 1.08998 * 109.47058 * 329.99737 * 13 12 2 33 33 H 0.96699 * 117.00200 * 179.97438 * 22 20 18 34 34 H 1.09001 * 109.46954 * 59.99933 * 24 23 16 35 35 H 1.08998 * 109.46553 * 179.97438 * 24 23 16 36 36 H 1.08997 * 109.46666 * 299.99625 * 24 23 16 37 37 H 1.08996 * 109.46832 * 65.78514 * 25 23 16 38 38 H 1.08998 * 109.47000 * 185.79440 * 25 23 16 39 39 H 1.08999 * 109.47100 * 305.79243 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6947 -0.2428 -2.4827 7 7 0.9386 0.8265 -2.6034 8 14 2.3110 -1.1280 -4.0078 9 1 3.1366 -2.2943 -3.6035 10 1 1.1527 -1.5964 -4.8103 11 1 3.1333 -0.1973 -4.8219 12 7 2.0183 -0.6906 1.1963 13 6 1.6642 -2.0932 1.4282 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2958 -0.7461 3.3137 17 1 2.6165 -1.4835 3.7412 18 6 4.7960 -1.0339 3.3997 19 1 5.4193 -0.7098 2.5664 20 6 5.2213 -2.3151 4.0697 21 8 4.3935 -3.0384 4.5711 22 8 6.5198 -2.6526 4.1094 23 6 4.1727 0.0513 4.2812 24 6 4.4716 1.5092 3.9260 25 6 4.0293 -0.2479 5.7749 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7008 1.1553 -3.4845 30 1 2.4156 -2.7377 0.9719 31 1 1.6236 -2.2851 2.5003 32 1 0.6903 -2.3001 0.9848 33 1 6.7442 -3.4835 4.5503 34 1 3.5368 2.0658 3.8590 35 1 5.1017 1.9495 4.6987 36 1 4.9888 1.5508 2.9674 37 1 4.3706 -1.2633 5.9764 38 1 4.6318 0.4582 6.3463 39 1 2.9833 -0.1518 6.0659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085415022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:13 Heat of formation + Delta-G solvation = -100.764679 kcal Electronic energy + Delta-G solvation = -21532.021318 eV Core-core repulsion = 18247.803581 eV Total energy + Delta-G solvation = -3284.217737 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94034 -39.35885 -37.24607 -36.06536 -35.15920 -32.86263 -30.07595 -29.14559 -27.46226 -26.20240 -25.68558 -25.18105 -22.48259 -20.37816 -19.29257 -18.47028 -17.84591 -17.07244 -16.34498 -15.94384 -15.87984 -15.18089 -14.53464 -14.27734 -13.82174 -13.59748 -13.43161 -12.87200 -12.60876 -12.49010 -12.39175 -12.30873 -11.94116 -11.68228 -11.55393 -11.41473 -11.28417 -11.06496 -10.82781 -10.68669 -10.63791 -10.29973 -10.19772 -10.16921 -9.87041 -9.16550 -8.82819 -8.43144 -7.59702 -6.08382 -4.16159 1.93820 2.68612 3.19432 3.25370 3.33369 3.36567 3.75234 3.95728 4.38389 4.59440 4.62864 4.84328 5.04470 5.16040 5.23102 5.31374 5.53807 5.61239 5.76560 5.84219 5.92458 6.00442 6.07306 6.13089 6.24943 6.34815 6.35958 6.67457 6.75992 6.81925 7.04729 7.41702 7.50321 7.70898 7.79527 8.00342 8.18163 8.50750 8.81851 9.02230 9.50507 10.96912 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.005346 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.063848 B = 5235.857354 C = 5673.757729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.585 5.585 13 C 0.085 3.915 14 C 0.532 3.468 15 O -0.542 6.542 16 C -0.144 4.144 17 H 0.134 0.866 18 C -0.147 4.147 19 H 0.139 0.861 20 C 0.515 3.485 21 O -0.513 6.513 22 O -0.511 6.511 23 C -0.059 4.059 24 C -0.103 4.103 25 C -0.125 4.125 26 H 0.030 0.970 27 H 0.012 0.988 28 H 0.094 0.906 29 H 0.263 0.737 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.409 0.591 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.379 -4.945 14.014 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.083 0.917 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.315 5.315 13 C -0.058 4.058 14 C 0.318 3.682 15 O -0.421 6.421 16 C -0.166 4.166 17 H 0.151 0.849 18 C -0.166 4.166 19 H 0.157 0.843 20 C 0.359 3.641 21 O -0.402 6.402 22 O -0.322 6.322 23 C -0.059 4.059 24 C -0.160 4.160 25 C -0.182 4.182 26 H 0.049 0.951 27 H 0.031 0.969 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.268 0.732 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.090 -4.051 13.665 15.500 hybrid contribution 0.402 -1.441 -0.758 1.677 sum 6.492 -5.493 12.907 15.457 Atomic orbital electron populations 1.22102 0.98184 0.99428 1.00916 1.18982 0.90912 0.94533 0.79829 0.91735 1.21352 1.31666 1.13015 0.90251 0.92255 1.24890 0.94947 0.94992 0.98961 1.69889 1.36384 1.22695 1.23647 0.86442 0.78596 0.79610 0.82760 1.19849 1.20925 1.20894 1.48213 1.48511 1.11653 1.23137 1.21604 1.01554 0.83067 0.99615 1.19247 0.79489 0.86564 0.82939 1.90657 1.58504 1.16673 1.76280 1.22699 0.91826 1.03093 0.98935 0.84863 1.22008 0.96864 0.93513 1.04253 0.84275 1.22259 0.79734 0.86178 0.75954 1.90703 1.53074 1.52316 1.44124 1.84530 1.28058 1.45474 1.74138 1.21706 0.98297 0.93430 0.92512 1.21423 1.02668 0.90690 1.01195 1.21536 1.02972 1.01883 0.91786 0.95080 0.96904 0.88736 0.92739 0.93318 0.92681 0.90817 0.73219 0.90386 0.93254 0.90903 0.92172 0.91336 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.95 37.16 0.33 -3.19 16 2 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.15 8.37 -34.44 -0.29 -14.44 16 5 H 0.06 1.60 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.00 11.31 55.43 0.63 -24.37 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.58 -12.51 2.75 -175.25 -0.48 -12.99 16 13 C 0.09 1.51 9.51 59.85 0.57 2.08 16 14 C 0.53 10.77 7.44 -10.99 -0.08 10.69 16 15 O -0.54 -12.42 12.43 5.55 0.07 -12.35 16 16 C -0.14 -2.28 4.52 -91.77 -0.41 -2.69 16 17 H 0.13 2.00 5.97 -51.93 -0.31 1.69 16 18 C -0.15 -2.08 5.65 -91.73 -0.52 -2.60 16 19 H 0.14 2.03 8.05 -51.93 -0.42 1.61 16 20 C 0.52 6.70 6.79 36.01 0.24 6.95 16 21 O -0.51 -7.57 15.96 -18.75 -0.30 -7.87 16 22 O -0.51 -5.20 13.42 -39.25 -0.53 -5.72 16 23 C -0.06 -0.80 2.70 -154.47 -0.42 -1.21 16 24 C -0.10 -1.45 8.09 37.16 0.30 -1.15 16 25 C -0.12 -1.39 9.73 37.16 0.36 -1.03 16 26 H 0.03 0.68 6.66 -51.93 -0.35 0.34 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.47 6.06 -51.93 -0.31 2.16 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.82 6.00 -51.93 -0.31 0.51 16 32 H 0.07 1.29 6.43 -51.93 -0.33 0.96 16 33 H 0.41 2.19 9.10 45.56 0.41 2.61 16 34 H 0.08 1.22 7.26 -51.93 -0.38 0.84 16 35 H 0.05 0.56 7.87 -51.93 -0.41 0.15 16 36 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 37 H 0.06 0.69 5.60 -51.93 -0.29 0.40 16 38 H 0.07 0.64 7.84 -51.93 -0.41 0.23 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 317.56 15.07 4.79 4.79 Total: -1.00 -31.49 317.56 -5.67 -37.16 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -4.63 Total: 3.94 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -0.19 Total: 1.40 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.14 Total: -37.36 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.76 Total: -25.95 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.49 -5.67 -37.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085415022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.608 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds