Wall clock time and date at job start Mon Mar 30 2020 04:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47262 * 2 1 4 4 C 1.50702 * 109.47315 * 239.99410 * 2 1 3 5 5 H 1.07994 * 119.99777 * 240.00288 * 4 2 1 6 6 C 1.37879 * 119.99705 * 59.72853 * 4 2 1 7 7 N 1.31516 * 119.99977 * 0.27697 * 6 4 2 8 8 Si 1.86798 * 119.99977 * 180.27412 * 6 4 2 9 9 H 1.48500 * 109.46981 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47018 * 119.99781 * 8 6 4 11 11 H 1.48496 * 109.47316 * 239.99958 * 8 6 4 12 12 N 1.46504 * 109.46783 * 119.99604 * 2 1 3 13 13 C 1.46507 * 119.99774 * 59.99995 * 12 2 1 14 14 C 1.34773 * 120.00212 * 240.00083 * 12 2 1 15 15 O 1.21287 * 119.99778 * 359.97438 * 14 12 2 16 16 C 1.50700 * 120.00135 * 180.02562 * 14 12 2 17 17 H 1.08995 * 115.54898 * 325.57810 * 16 14 12 18 18 C 1.53001 * 117.49714 * 111.25184 * 16 14 12 19 19 H 1.08999 * 117.50225 * 359.97438 * 18 16 14 20 20 C 1.50703 * 117.49418 * 214.97945 * 18 16 14 21 21 O 1.20826 * 120.00407 * 356.42186 * 20 18 16 22 22 O 1.34227 * 119.99825 * 176.43026 * 20 18 16 23 23 C 1.53001 * 117.49885 * 179.91041 * 16 14 12 24 24 C 1.53005 * 117.49717 * 0.02562 * 23 16 14 25 25 C 1.53001 * 117.49940 * 145.01944 * 23 16 14 26 26 H 1.08999 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47434 * 300.00650 * 1 2 3 28 28 H 1.09003 * 109.46752 * 60.00363 * 1 2 3 29 29 H 0.97000 * 119.99717 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.46770 * 90.00309 * 13 12 2 31 31 H 1.08996 * 109.46764 * 209.99546 * 13 12 2 32 32 H 1.08998 * 109.47058 * 329.99737 * 13 12 2 33 33 H 0.96699 * 117.00200 * 179.97438 * 22 20 18 34 34 H 1.09001 * 109.46954 * 59.99933 * 24 23 16 35 35 H 1.08998 * 109.46553 * 179.97438 * 24 23 16 36 36 H 1.08997 * 109.46666 * 299.99625 * 24 23 16 37 37 H 1.08996 * 109.46832 * 65.78514 * 25 23 16 38 38 H 1.08998 * 109.47000 * 185.79440 * 25 23 16 39 39 H 1.08999 * 109.47100 * 305.79243 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6947 -0.2428 -2.4827 7 7 0.9386 0.8265 -2.6034 8 14 2.3110 -1.1280 -4.0078 9 1 3.1366 -2.2943 -3.6035 10 1 1.1527 -1.5964 -4.8103 11 1 3.1333 -0.1973 -4.8219 12 7 2.0183 -0.6906 1.1963 13 6 1.6642 -2.0932 1.4282 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2958 -0.7461 3.3137 17 1 2.6165 -1.4835 3.7412 18 6 4.7960 -1.0339 3.3997 19 1 5.4193 -0.7098 2.5664 20 6 5.2213 -2.3151 4.0697 21 8 4.3935 -3.0384 4.5711 22 8 6.5198 -2.6526 4.1094 23 6 4.1727 0.0513 4.2812 24 6 4.4716 1.5092 3.9260 25 6 4.0293 -0.2479 5.7749 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 0.7008 1.1553 -3.4845 30 1 2.4156 -2.7377 0.9719 31 1 1.6236 -2.2851 2.5003 32 1 0.6903 -2.3001 0.9848 33 1 6.7442 -3.4835 4.5503 34 1 3.5368 2.0658 3.8590 35 1 5.1017 1.9495 4.6987 36 1 4.9888 1.5508 2.9674 37 1 4.3706 -1.2633 5.9764 38 1 4.6318 0.4582 6.3463 39 1 2.9833 -0.1518 6.0659 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085415022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:12 Heat of formation + Delta-G solvation = -121.122578 kcal Electronic energy + Delta-G solvation = -21532.904103 eV Core-core repulsion = 18247.803581 eV Total energy + Delta-G solvation = -3285.100522 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.08362 -40.70305 -38.55604 -37.15888 -36.76857 -34.81511 -31.71266 -30.51906 -28.48368 -27.69116 -27.33580 -26.89640 -23.90821 -21.90088 -20.48834 -19.72212 -19.08765 -18.56927 -18.11724 -17.42266 -16.91950 -16.83998 -16.12391 -15.91536 -15.03792 -14.83566 -14.64339 -14.43512 -14.11604 -13.91432 -13.66982 -13.49733 -13.33166 -13.11600 -13.00253 -12.87531 -12.71000 -12.68722 -12.46934 -12.30736 -12.19104 -12.10463 -11.68560 -11.42754 -11.20233 -11.00237 -10.59074 -10.35186 -9.34282 -8.15691 -6.31921 0.88922 1.39646 1.40991 1.48335 1.53207 1.98164 2.28440 2.46908 2.64960 3.12218 3.40975 3.48801 3.59840 3.91344 4.01257 4.29493 4.40093 4.51915 4.61757 4.72133 4.75017 4.80097 4.88740 4.95648 4.98316 4.99059 5.02735 5.05948 5.21774 5.43930 5.51002 5.54629 5.61104 5.66974 6.01873 6.15500 6.75589 6.79171 6.96414 7.29440 7.45680 8.88744 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022963 B = 0.005346 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.063848 B = 5235.857354 C = 5673.757729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.262 3.738 3 H 0.016 0.984 4 C -0.537 4.537 5 H 0.057 0.943 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.963 3.037 9 H -0.268 1.268 10 H -0.274 1.274 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.524 3.476 15 O -0.578 6.578 16 C -0.153 4.153 17 H 0.147 0.853 18 C -0.144 4.144 19 H 0.130 0.870 20 C 0.527 3.473 21 O -0.530 6.530 22 O -0.504 6.504 23 C -0.046 4.046 24 C -0.100 4.100 25 C -0.120 4.120 26 H 0.046 0.954 27 H 0.022 0.978 28 H 0.069 0.931 29 H 0.265 0.735 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.433 0.567 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -6.719 15.420 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.160 3.840 3 H 0.033 0.967 4 C -0.576 4.576 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.200 1.200 11 H -0.209 1.209 12 N -0.325 5.325 13 C -0.057 4.057 14 C 0.313 3.687 15 O -0.459 6.459 16 C -0.174 4.174 17 H 0.164 0.836 18 C -0.164 4.164 19 H 0.148 0.852 20 C 0.370 3.630 21 O -0.421 6.421 22 O -0.318 6.318 23 C -0.047 4.047 24 C -0.156 4.156 25 C -0.176 4.176 26 H 0.065 0.935 27 H 0.041 0.959 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.295 0.705 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.109 0.891 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.058 -5.868 15.101 17.672 hybrid contribution 0.178 -0.848 -1.172 1.457 sum 7.236 -6.716 13.930 17.074 Atomic orbital electron populations 1.21892 0.97168 1.00084 1.00104 1.18575 0.91632 0.92380 0.81383 0.96652 1.21575 1.31797 1.13007 0.91225 0.92507 1.25701 0.95057 0.95652 1.01897 1.70020 1.37214 1.23880 1.24384 0.85427 0.78235 0.78471 0.79000 1.19208 1.19958 1.20941 1.48203 1.48967 1.13079 1.22287 1.21760 1.01415 0.80745 1.01758 1.19994 0.78598 0.86344 0.83809 1.90639 1.59502 1.18439 1.77348 1.22483 0.93057 1.04294 0.97536 0.83573 1.21975 0.95280 0.94727 1.04396 0.85202 1.21812 0.80394 0.85323 0.75446 1.90706 1.53759 1.52658 1.44929 1.84468 1.26194 1.47034 1.74073 1.21856 0.96238 0.92751 0.93815 1.21345 1.01919 0.91315 1.01062 1.21556 1.03966 1.02502 0.89601 0.93537 0.95938 0.91238 0.92592 0.93236 0.89513 0.90810 0.70475 0.92413 0.90017 0.93400 0.92126 0.89086 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.51 8.95 71.98 0.64 -5.87 16 2 C 0.26 13.72 2.64 44.24 0.12 13.83 16 3 H 0.02 0.96 6.90 -2.39 -0.02 0.94 16 4 C -0.54 -29.51 8.37 25.60 0.21 -29.30 16 5 H 0.06 3.07 7.65 -2.91 -0.02 3.05 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.76 11.31 21.45 0.24 -52.52 16 8 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 N -0.60 -25.76 2.75 -826.77 -2.28 -28.03 16 13 C 0.09 2.93 9.51 127.77 1.21 4.15 16 14 C 0.52 21.61 7.44 87.66 0.65 22.26 16 15 O -0.58 -27.70 12.43 -3.05 -0.04 -27.74 16 16 C -0.15 -4.67 4.52 -11.54 -0.05 -4.72 16 17 H 0.15 4.07 5.97 -2.39 -0.01 4.06 16 18 C -0.14 -3.88 5.65 -11.51 -0.07 -3.94 16 19 H 0.13 3.75 8.05 -2.39 -0.02 3.73 16 20 C 0.53 12.33 6.79 71.24 0.48 12.81 16 21 O -0.53 -14.13 15.96 21.96 0.35 -13.78 16 22 O -0.50 -8.69 13.42 -51.38 -0.69 -9.38 16 23 C -0.05 -1.17 2.70 -52.15 -0.14 -1.31 16 24 C -0.10 -2.75 8.09 71.98 0.58 -2.17 16 25 C -0.12 -2.29 9.73 71.98 0.70 -1.59 16 26 H 0.05 2.06 6.66 -2.39 -0.02 2.04 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 3.74 6.06 -2.39 -0.01 3.72 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 2.39 6.00 -2.39 -0.01 2.38 16 32 H 0.07 2.50 6.43 -2.39 -0.02 2.48 16 33 H 0.43 3.10 9.10 -74.06 -0.67 2.43 16 34 H 0.06 1.84 7.26 -2.39 -0.02 1.82 16 35 H 0.08 1.69 7.87 -2.39 -0.02 1.67 16 36 H 0.05 1.55 7.02 -2.39 -0.02 1.53 16 37 H 0.06 1.19 5.60 -2.39 -0.01 1.18 16 38 H 0.09 1.35 7.84 -2.39 -0.02 1.33 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.53 317.56 4.81 -64.72 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.40 Total: 15.87 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 4.80 Total: 5.51 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.03 Total: -80.56 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -0.38 Total: -50.90 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -69.53 4.81 -64.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085415022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.404 kcal (2) G-P(sol) polarization free energy of solvation -69.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds