Wall clock time and date at job start Mon Mar 30 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99685 * 2 1 4 4 H 1.48508 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47397 * 300.00055 * 3 2 1 6 6 H 1.48494 * 109.47316 * 60.00693 * 3 2 1 7 7 C 1.37873 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99993 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00055 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00204 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47054 * 180.02562 * 13 11 10 15 15 C 1.46898 * 110.99673 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00025 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.46496 * 119.99846 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49700 * 223.62259 * 20 19 17 22 22 C 1.52999 * 60.00284 * 252.51102 * 21 20 19 23 23 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46800 * 60.00351 * 9 7 2 25 25 H 1.08998 * 109.46887 * 300.00145 * 9 7 2 26 26 H 0.96999 * 119.99688 * 359.97438 * 10 9 7 27 27 H 1.08993 * 109.46849 * 60.00251 * 13 11 10 28 28 H 1.08995 * 109.46627 * 299.99586 * 13 11 10 29 29 H 1.00895 * 111.00497 * 56.04005 * 14 13 11 30 30 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 31 31 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 32 32 H 1.09001 * 109.46801 * 300.00064 * 16 15 14 33 33 H 1.09001 * 109.46998 * 59.99660 * 16 15 14 34 34 H 0.96998 * 119.99962 * 0.02562 * 19 17 16 35 35 H 1.08997 * 115.55382 * 9.33363 * 20 19 17 36 36 H 1.08994 * 117.49898 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49491 * 145.02442 * 21 20 19 38 38 H 1.08997 * 117.50444 * 252.51321 * 22 21 20 39 39 H 1.08998 * 117.52052 * 107.47472 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7540 -4.8834 -0.0015 12 8 0.5615 -5.1050 -0.0006 13 6 2.7333 -6.0288 -0.0022 14 7 1.9987 -7.3010 -0.0023 15 6 2.9232 -8.4426 -0.0023 16 6 2.1232 -9.7468 -0.0018 17 6 3.0716 -10.9179 -0.0025 18 8 4.2694 -10.7282 -0.0029 19 7 2.5886 -12.1762 -0.0017 20 6 3.5106 -13.3146 -0.0018 21 6 3.1911 -14.4823 -0.9374 22 6 2.9996 -14.6375 0.5726 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 3.1568 -3.4354 -0.0028 27 1 3.3604 -5.9711 0.8874 28 1 3.3592 -5.9710 -0.8926 29 1 1.3620 -7.3509 -0.7833 30 1 3.5512 -8.4016 0.8877 31 1 3.5511 -8.4016 -0.8923 32 1 1.4955 -9.7876 0.8884 33 1 1.4949 -9.7879 -0.8916 34 1 1.6305 -12.3279 -0.0010 35 1 4.5606 -13.0692 0.1569 36 1 2.2952 -14.4032 -1.5531 37 1 4.0312 -15.0052 -1.3946 38 1 3.7136 -15.2625 1.1089 39 1 1.9777 -14.6606 0.9509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092987753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:23 Heat of formation + Delta-G solvation = -56.349737 kcal Electronic energy + Delta-G solvation = -19132.814527 eV Core-core repulsion = 15882.815518 eV Total energy + Delta-G solvation = -3249.999010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17558 -38.83994 -37.57703 -35.85105 -34.10977 -33.28267 -32.31709 -31.10432 -27.83750 -25.84373 -23.47427 -22.88587 -22.23085 -21.77676 -20.81036 -19.64422 -17.52053 -17.28366 -16.80655 -16.33755 -15.71863 -15.43725 -15.16730 -14.96736 -14.64808 -14.28854 -13.97604 -13.52514 -13.26418 -13.03689 -12.79242 -12.32240 -12.09813 -11.93750 -11.90564 -11.77627 -11.52694 -11.27658 -11.00825 -10.94263 -10.88675 -10.31034 -10.18009 -9.36845 -9.18473 -9.03826 -8.72894 -8.39824 -7.85218 -6.15905 -4.22660 2.26151 2.63976 3.24210 3.31279 3.34433 3.40632 3.43898 3.82653 4.27797 4.30041 4.41812 4.46339 4.50126 4.63387 4.79957 4.95772 5.12802 5.20229 5.28705 5.35768 5.41175 5.47392 5.54114 5.56883 5.63449 5.73786 5.80846 6.08505 6.85698 7.07584 7.32355 7.37596 7.46688 7.53551 7.68933 7.87089 7.98245 8.65299 8.80017 9.13361 9.44162 10.94348 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.078488 B = 0.002162 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.656872 B =12945.824509 C =13200.722516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.714 5.714 11 C 0.497 3.503 12 O -0.545 6.545 13 C 0.041 3.959 14 N -0.674 5.674 15 C 0.075 3.925 16 C -0.138 4.138 17 C 0.521 3.479 18 O -0.538 6.538 19 N -0.706 5.706 20 C 0.079 3.921 21 C -0.194 4.194 22 C -0.190 4.190 23 H 0.265 0.735 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.390 0.610 27 H 0.098 0.902 28 H 0.055 0.945 29 H 0.350 0.650 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.403 0.597 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.306 -26.476 -0.956 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.363 5.363 11 C 0.281 3.719 12 O -0.423 6.423 13 C -0.091 4.091 14 N -0.307 5.307 15 C -0.055 4.055 16 C -0.179 4.179 17 C 0.308 3.692 18 O -0.414 6.414 19 N -0.357 5.357 20 C -0.027 4.027 21 C -0.233 4.233 22 C -0.228 4.228 23 H 0.075 0.925 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.223 0.777 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.169 0.831 30 H 0.099 0.901 31 H 0.056 0.944 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.238 0.762 35 H 0.155 0.845 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.053 -26.305 -0.272 26.994 hybrid contribution 0.645 0.860 -0.914 1.411 sum 6.698 -25.445 -1.186 26.339 Atomic orbital electron populations 1.69989 1.06101 1.27171 1.49042 1.24961 0.94927 0.99481 0.94730 0.86354 0.79828 0.82946 0.77732 1.19640 1.20819 1.20798 1.21281 0.93330 0.90479 1.53017 0.91826 1.19100 0.88313 0.81947 0.97724 1.46448 1.11128 1.06114 1.72659 1.20349 0.89513 0.84251 0.77806 1.90657 1.16683 1.84741 1.50265 1.21823 0.95658 0.89145 1.02523 1.60070 1.19021 1.00168 1.51416 1.21652 0.93659 0.88071 1.02124 1.21601 0.98507 0.92283 1.05479 1.20756 0.89678 0.83885 0.74848 1.90712 1.16408 1.85396 1.48864 1.45434 1.09651 1.04980 1.75624 1.21611 0.95773 0.81404 1.03957 1.23430 1.04147 1.02572 0.93165 1.23381 1.03159 0.99825 0.96460 0.92516 0.95598 0.95493 0.77732 0.88423 0.92660 0.83118 0.90076 0.94397 0.87511 0.88639 0.76228 0.84470 0.88450 0.87984 0.87849 0.88383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.83 9.28 -34.44 -0.32 -15.15 16 8 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 9 C 0.25 6.68 5.43 -5.19 -0.03 6.65 16 10 N -0.71 -15.10 5.55 -61.46 -0.34 -15.44 16 11 C 0.50 9.91 7.87 -10.99 -0.09 9.82 16 12 O -0.55 -13.11 16.20 5.55 0.09 -13.02 16 13 C 0.04 0.59 6.17 -4.97 -0.03 0.56 16 14 N -0.67 -9.11 6.12 -115.06 -0.70 -9.82 16 15 C 0.07 0.83 4.97 -3.82 -0.02 0.81 16 16 C -0.14 -1.17 5.96 -27.88 -0.17 -1.34 16 17 C 0.52 5.09 7.83 -10.99 -0.09 5.00 16 18 O -0.54 -7.35 15.55 5.56 0.09 -7.27 16 19 N -0.71 -4.96 5.57 -53.81 -0.30 -5.26 16 20 C 0.08 0.55 6.43 -67.93 -0.44 0.11 16 21 C -0.19 -1.01 10.46 -26.73 -0.28 -1.29 16 22 C -0.19 -0.92 10.46 -26.73 -0.28 -1.20 16 23 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.39 7.04 8.32 -40.82 -0.34 6.70 16 27 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.35 4.72 8.43 -39.29 -0.33 4.39 16 30 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.04 0.43 8.10 -51.93 -0.42 0.01 16 32 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 1.76 8.83 -40.82 -0.36 1.40 16 35 H 0.14 1.17 7.40 -51.93 -0.38 0.79 16 36 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -34.72 339.94 -8.18 -42.90 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -6.02 Total: 6.69 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.83 Total: 5.63 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.61 Total: -55.99 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.18 Total: -20.28 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.72 -8.18 -42.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092987753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.454 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds