Wall clock time and date at job start Mon Mar 30 2020 05:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99685 * 2 1 4 4 H 1.48508 * 109.47179 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47397 * 300.00055 * 3 2 1 6 6 H 1.48494 * 109.47316 * 60.00693 * 3 2 1 7 7 C 1.37873 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00314 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99993 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47093 * 179.97438 * 9 7 2 11 11 C 1.34770 * 120.00055 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99846 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00204 * 180.02562 * 11 10 9 14 14 N 1.46903 * 109.47054 * 180.02562 * 13 11 10 15 15 C 1.46898 * 110.99673 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47006 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00025 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.46496 * 119.99846 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49700 * 223.62259 * 20 19 17 22 22 C 1.52999 * 60.00284 * 252.51102 * 21 20 19 23 23 H 0.97001 * 120.00111 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46800 * 60.00351 * 9 7 2 25 25 H 1.08998 * 109.46887 * 300.00145 * 9 7 2 26 26 H 0.96999 * 119.99688 * 359.97438 * 10 9 7 27 27 H 1.08993 * 109.46849 * 60.00251 * 13 11 10 28 28 H 1.08995 * 109.46627 * 299.99586 * 13 11 10 29 29 H 1.00895 * 111.00497 * 56.04005 * 14 13 11 30 30 H 1.09001 * 109.47062 * 59.99745 * 15 14 13 31 31 H 1.08993 * 109.47084 * 299.99192 * 15 14 13 32 32 H 1.09001 * 109.46801 * 300.00064 * 16 15 14 33 33 H 1.09001 * 109.46998 * 59.99660 * 16 15 14 34 34 H 0.96998 * 119.99962 * 0.02562 * 19 17 16 35 35 H 1.08997 * 115.55382 * 9.33363 * 20 19 17 36 36 H 1.08994 * 117.49898 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49491 * 145.02442 * 21 20 19 38 38 H 1.08997 * 117.50444 * 252.51321 * 22 21 20 39 39 H 1.08998 * 117.52052 * 107.47472 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0018 11 6 1.7540 -4.8834 -0.0015 12 8 0.5615 -5.1050 -0.0006 13 6 2.7333 -6.0288 -0.0022 14 7 1.9987 -7.3010 -0.0023 15 6 2.9232 -8.4426 -0.0023 16 6 2.1232 -9.7468 -0.0018 17 6 3.0716 -10.9179 -0.0025 18 8 4.2694 -10.7282 -0.0029 19 7 2.5886 -12.1762 -0.0017 20 6 3.5106 -13.3146 -0.0018 21 6 3.1911 -14.4823 -0.9374 22 6 2.9996 -14.6375 0.5726 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8897 26 1 3.1568 -3.4354 -0.0028 27 1 3.3604 -5.9711 0.8874 28 1 3.3592 -5.9710 -0.8926 29 1 1.3620 -7.3509 -0.7833 30 1 3.5512 -8.4016 0.8877 31 1 3.5511 -8.4016 -0.8923 32 1 1.4955 -9.7876 0.8884 33 1 1.4949 -9.7879 -0.8916 34 1 1.6305 -12.3279 -0.0010 35 1 4.5606 -13.0692 0.1569 36 1 2.2952 -14.4032 -1.5531 37 1 4.0312 -15.0052 -1.3946 38 1 3.7136 -15.2625 1.1089 39 1 1.9777 -14.6606 0.9509 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092987753.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:23 Heat of formation + Delta-G solvation = -85.099957 kcal Electronic energy + Delta-G solvation = -19134.061230 eV Core-core repulsion = 15882.815518 eV Total energy + Delta-G solvation = -3251.245713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91663 -40.46722 -38.16740 -36.95911 -36.03405 -34.33613 -33.95555 -32.05984 -29.64417 -27.25416 -24.72497 -23.81707 -23.27028 -22.44150 -21.59647 -21.29086 -18.99492 -18.25327 -17.71089 -17.36607 -17.25933 -16.99795 -16.42329 -16.18157 -15.60708 -15.39885 -15.31191 -14.78061 -14.23073 -14.21145 -14.08907 -13.78043 -13.58224 -13.26763 -12.88409 -12.75671 -12.62888 -12.50307 -12.35118 -12.22015 -12.14298 -11.47418 -11.45241 -10.98063 -10.81122 -10.72528 -9.81885 -9.75457 -9.43811 -8.28985 -6.45368 1.43646 1.44660 1.54227 1.58161 1.79243 1.99381 2.32077 2.53584 2.98663 3.05908 3.31139 3.78449 3.83029 3.94107 4.04882 4.06068 4.09658 4.18933 4.39377 4.48894 4.62355 4.76725 4.83755 4.93736 4.95527 5.03188 5.12253 5.20611 5.25611 5.49797 5.51616 5.68272 5.85279 5.88729 6.32003 6.49579 6.66237 6.94502 7.21292 7.24100 7.51874 8.83400 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.078488 B = 0.002162 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.656872 B =12945.824509 C =13200.722516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.985 3.015 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.266 3.734 10 N -0.710 5.710 11 C 0.494 3.506 12 O -0.590 6.590 13 C 0.055 3.945 14 N -0.685 5.685 15 C 0.080 3.920 16 C -0.130 4.130 17 C 0.520 3.480 18 O -0.584 6.584 19 N -0.692 5.692 20 C 0.050 3.950 21 C -0.186 4.186 22 C -0.174 4.174 23 H 0.269 0.731 24 H -0.012 1.012 25 H -0.013 1.013 26 H 0.408 0.592 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.349 0.651 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.418 0.582 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.633 -27.314 -1.084 28.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.143 3.857 10 N -0.360 5.360 11 C 0.281 3.719 12 O -0.471 6.471 13 C -0.077 4.077 14 N -0.318 5.318 15 C -0.049 4.049 16 C -0.170 4.170 17 C 0.308 3.692 18 O -0.464 6.464 19 N -0.343 5.343 20 C -0.056 4.056 21 C -0.224 4.224 22 C -0.212 4.212 23 H 0.077 0.923 24 H 0.006 0.994 25 H 0.005 0.995 26 H 0.244 0.756 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.168 0.832 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.255 0.745 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.129 0.871 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.397 -27.209 -0.400 28.200 hybrid contribution 0.183 1.001 -0.872 1.340 sum 7.580 -26.208 -1.271 27.312 Atomic orbital electron populations 1.70145 1.08239 1.28487 1.50060 1.26073 0.95803 1.03924 0.93902 0.85099 0.79048 0.77316 0.77670 1.17713 1.20426 1.20480 1.21672 0.94347 0.90648 1.52730 0.89819 1.18537 0.88712 0.84324 0.94104 1.46192 1.11220 1.05572 1.73049 1.21357 0.89906 0.84870 0.75754 1.90634 1.19170 1.85383 1.51913 1.21742 0.94112 0.87049 1.04777 1.60067 1.19651 1.00380 1.51674 1.21602 0.93434 0.88270 1.01636 1.21535 0.98045 0.90438 1.07002 1.20939 0.89110 0.84873 0.74298 1.90694 1.18242 1.86080 1.51383 1.45309 1.10513 1.04279 1.74175 1.21636 0.95043 0.82122 1.06831 1.23490 1.04573 1.00770 0.93565 1.23457 1.03835 0.97605 0.96326 0.92254 0.99359 0.99506 0.75610 0.86358 0.89873 0.83169 0.90863 0.94553 0.86445 0.86574 0.74515 0.86647 0.87612 0.87510 0.87120 0.87172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.56 -30.44 9.28 25.60 0.24 -30.20 16 8 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.71 5.43 85.63 0.46 15.18 16 10 N -0.71 -30.02 5.55 -466.76 -2.59 -32.61 16 11 C 0.49 19.65 7.87 87.66 0.69 20.34 16 12 O -0.59 -29.04 16.20 -3.05 -0.05 -29.09 16 13 C 0.06 1.49 6.17 85.56 0.53 2.02 16 14 N -0.68 -17.52 6.12 -517.94 -3.17 -20.70 16 15 C 0.08 1.66 4.97 86.31 0.43 2.08 16 16 C -0.13 -1.99 5.96 29.85 0.18 -1.81 16 17 C 0.52 9.70 7.83 87.66 0.69 10.38 16 18 O -0.58 -16.02 15.55 -3.04 -0.05 -16.07 16 19 N -0.69 -8.80 5.57 -442.53 -2.46 -11.27 16 20 C 0.05 0.65 6.43 45.00 0.29 0.94 16 21 C -0.19 -1.60 10.46 30.59 0.32 -1.28 16 22 C -0.17 -1.35 10.46 30.60 0.32 -1.03 16 23 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 24 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 25 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 26 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16 27 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 28 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.35 9.02 8.43 -89.70 -0.76 8.27 16 30 H 0.07 1.65 8.10 -2.39 -0.02 1.63 16 31 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 32 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.42 2.76 8.83 -92.71 -0.82 1.94 16 35 H 0.12 2.04 7.40 -2.39 -0.02 2.02 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -77.82 339.94 -2.67 -80.50 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -1.27 Total: 23.53 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 4.60 Total: 17.22 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -7.94 Total: -120.65 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.10 Total: -45.16 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -77.82 -2.67 -80.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092987753.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.602 kcal (2) G-P(sol) polarization free energy of solvation -77.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds