Wall clock time and date at job start Mon Mar 30 2020 05:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48496 * 109.47607 * 270.00524 * 3 2 1 5 5 H 1.48498 * 109.46890 * 30.00783 * 3 2 1 6 6 H 1.48500 * 109.46678 * 150.00307 * 3 2 1 7 7 C 1.38952 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00695 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99331 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99398 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99686 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47145 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00095 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47114 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00025 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.46496 * 119.99846 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49700 * 223.62259 * 20 19 17 22 22 C 1.52999 * 60.00284 * 252.51102 * 21 20 19 23 23 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00086 * 0.02562 * 9 7 2 25 25 H 1.08996 * 109.47673 * 59.99834 * 12 10 9 26 26 H 1.09001 * 109.46626 * 299.99408 * 12 10 9 27 27 H 1.00899 * 110.99247 * 303.94930 * 13 12 10 28 28 H 1.09001 * 109.47267 * 59.99263 * 14 13 12 29 29 H 1.09004 * 109.47041 * 299.99667 * 14 13 12 30 30 H 1.09001 * 109.46832 * 59.99999 * 15 14 13 31 31 H 1.08993 * 109.47194 * 299.99521 * 15 14 13 32 32 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 33 33 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 34 34 H 0.96998 * 119.99962 * 0.02562 * 19 17 16 35 35 H 1.08997 * 115.55382 * 9.33363 * 20 19 17 36 36 H 1.08994 * 117.49898 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49491 * 145.02442 * 21 20 19 38 38 H 1.08997 * 117.50444 * 252.51321 * 22 21 20 39 39 H 1.08998 * 117.52052 * 107.47472 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6525 0.7002 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5606 -2.3707 -0.0011 13 7 6.0503 -3.7557 -0.0017 14 6 7.5187 -3.7949 -0.0023 15 6 7.9900 -5.2505 -0.0023 16 6 9.5195 -5.2914 -0.0036 17 6 9.9837 -6.7251 -0.0030 18 8 9.1713 -7.6256 -0.0021 19 7 11.3017 -7.0067 -0.0044 20 6 11.7529 -8.4004 -0.0044 21 6 12.9064 -8.7695 0.9307 22 6 13.1401 -8.6939 -0.5794 23 1 -0.4850 0.8401 0.0004 24 1 3.8648 -0.3633 -0.0007 25 1 5.9241 -1.8569 0.8888 26 1 5.9239 -1.8569 -0.8911 27 1 5.6748 -4.2722 0.7795 28 1 7.8960 -3.2912 0.8876 29 1 7.8953 -3.2908 -0.8924 30 1 7.6126 -5.7546 -0.8921 31 1 7.6135 -5.7543 0.8879 32 1 9.8956 -4.7877 -0.8941 33 1 9.8972 -4.7872 0.8859 34 1 11.9515 -6.2865 -0.0055 35 1 10.9744 -9.1467 -0.1626 36 1 13.3291 -7.9754 1.5461 37 1 12.8866 -9.7588 1.3880 38 1 13.2742 -9.6333 -1.1156 39 1 13.7167 -7.8500 -0.9582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092988470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:21 Heat of formation + Delta-G solvation = -50.859457 kcal Electronic energy + Delta-G solvation = -19192.371019 eV Core-core repulsion = 15942.610086 eV Total energy + Delta-G solvation = -3249.760933 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.14334 -38.46456 -37.57222 -36.09624 -33.96158 -33.34991 -32.53945 -31.61333 -28.10151 -25.57574 -23.60915 -22.88903 -22.36843 -21.44335 -20.71020 -19.32707 -18.29167 -17.47110 -16.87343 -16.32801 -15.90757 -15.42511 -15.06611 -14.85017 -14.48712 -14.16066 -14.09591 -13.52163 -13.19426 -13.11223 -12.73411 -12.29994 -12.11790 -12.06591 -11.86111 -11.70605 -11.67961 -11.34565 -11.14480 -10.99808 -10.81823 -10.57802 -10.12548 -9.94949 -9.54617 -9.16815 -8.55383 -8.16236 -8.09002 -6.28359 -3.79660 2.29608 2.67922 3.03861 3.08504 3.16335 3.44213 3.77606 4.10278 4.13632 4.28749 4.40301 4.46504 4.50899 4.79452 4.83044 5.00660 5.12040 5.21957 5.24003 5.31820 5.35589 5.41125 5.52229 5.56569 5.60005 5.66652 5.84332 5.96299 6.07720 6.09122 6.29116 7.09145 7.16047 7.61060 7.63620 7.91288 8.17773 8.62999 8.98044 9.45404 9.86272 10.84876 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.066127 B = 0.002274 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.325087 B =12312.542271 C =12634.114944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.040 3.960 3 Si 0.881 3.119 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.592 5.592 10 C 0.450 3.550 11 O -0.563 6.563 12 C 0.048 3.952 13 N -0.670 5.670 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.137 4.137 17 C 0.516 3.484 18 O -0.531 6.531 19 N -0.709 5.709 20 C 0.079 3.921 21 C -0.195 4.195 22 C -0.190 4.190 23 H 0.273 0.727 24 H 0.370 0.630 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.352 0.648 28 H 0.026 0.974 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.401 0.599 35 H 0.138 0.862 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.313 -8.207 0.910 30.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.163 4.163 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.231 5.231 10 C 0.235 3.765 11 O -0.445 6.445 12 C -0.084 4.084 13 N -0.303 5.303 14 C -0.070 4.070 15 C -0.142 4.142 16 C -0.177 4.177 17 C 0.303 3.697 18 O -0.406 6.406 19 N -0.359 5.359 20 C -0.027 4.027 21 C -0.233 4.233 22 C -0.229 4.229 23 H 0.083 0.917 24 H 0.203 0.797 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.171 0.829 28 H 0.044 0.956 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.235 0.765 35 H 0.156 0.844 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 27.995 -9.510 0.228 29.567 hybrid contribution 1.281 2.111 0.928 2.638 sum 29.276 -7.399 1.156 30.219 Atomic orbital electron populations 1.69627 1.05628 1.27437 1.49522 1.25045 0.95509 0.97972 0.97735 0.86655 0.79711 0.84032 0.78869 1.19615 1.20230 1.19565 1.19446 0.79272 0.96648 1.47946 0.86277 1.42208 1.07524 1.06142 1.67275 1.19742 0.88262 0.84558 0.83904 1.90572 1.69445 1.30944 1.53496 1.21703 0.94994 0.90538 1.01205 1.60016 1.06068 1.12535 1.51654 1.21966 0.88611 0.96170 1.00219 1.21305 0.91712 0.96534 1.04640 1.21639 0.98780 0.92834 1.04474 1.20864 0.81632 0.92106 0.75050 1.90738 1.53099 1.48531 1.48228 1.45463 1.07599 1.06948 1.75937 1.21615 0.91809 0.85452 1.03822 1.23426 1.03155 1.03637 0.93126 1.23376 0.99151 1.03886 0.96468 0.91652 0.79709 0.93821 0.89497 0.82859 0.95613 0.91092 0.89975 0.91105 0.88589 0.88857 0.76453 0.84442 0.88517 0.87972 0.87851 0.88473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.06 13.96 55.50 0.77 -25.29 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 3 Si 0.88 19.52 27.74 -169.99 -4.71 14.80 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 7 C -0.30 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 9 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 10 C 0.45 10.48 7.82 -10.98 -0.09 10.39 16 11 O -0.56 -15.60 15.78 5.55 0.09 -15.52 16 12 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 13 N -0.67 -10.80 6.13 -115.06 -0.70 -11.51 16 14 C 0.06 0.69 5.69 -3.83 -0.02 0.67 16 15 C -0.10 -1.14 4.76 -26.73 -0.13 -1.27 16 16 C -0.14 -1.03 5.70 -27.88 -0.16 -1.19 16 17 C 0.52 5.10 7.83 -10.99 -0.09 5.01 16 18 O -0.53 -7.71 15.55 5.56 0.09 -7.62 16 19 N -0.71 -4.91 5.57 -53.81 -0.30 -5.21 16 20 C 0.08 0.57 6.43 -67.93 -0.44 0.13 16 21 C -0.19 -1.02 10.46 -26.73 -0.28 -1.30 16 22 C -0.19 -0.93 10.46 -26.73 -0.28 -1.21 16 23 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 24 H 0.37 7.83 5.76 -40.82 -0.24 7.59 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.35 5.94 8.43 -39.29 -0.33 5.61 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.40 1.56 8.83 -40.82 -0.36 1.20 16 35 H 0.14 1.23 7.40 -51.93 -0.38 0.85 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 335.24 15.07 5.05 5.05 Total: -1.00 -35.88 335.24 -7.46 -43.34 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -5.94 Total: 12.22 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -1.75 Total: 4.13 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.29 Total: -56.41 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.17 Total: -23.14 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.71 Total: 14.80 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.88 -7.46 -43.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092988470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.514 kcal (2) G-P(sol) polarization free energy of solvation -35.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds