Wall clock time and date at job start Mon Mar 30 2020 05:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86797 * 120.00112 * 2 1 4 4 H 1.48496 * 109.47607 * 270.00524 * 3 2 1 5 5 H 1.48498 * 109.46890 * 30.00783 * 3 2 1 6 6 H 1.48500 * 109.46678 * 150.00307 * 3 2 1 7 7 C 1.38952 * 119.99501 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00695 * 359.97438 * 7 2 1 9 9 N 1.37102 * 119.99331 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99398 * 179.97438 * 9 7 2 11 11 O 1.21290 * 120.00613 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99686 * 180.02562 * 10 9 7 13 13 N 1.46904 * 109.47145 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00095 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47114 * 179.97438 * 14 13 12 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47184 * 179.97438 * 16 15 14 18 18 O 1.21282 * 120.00025 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00035 * 179.97438 * 17 16 15 20 20 C 1.46496 * 119.99846 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49700 * 223.62259 * 20 19 17 22 22 C 1.52999 * 60.00284 * 252.51102 * 21 20 19 23 23 H 0.97000 * 119.99761 * 359.97438 * 1 2 3 24 24 H 0.97000 * 120.00086 * 0.02562 * 9 7 2 25 25 H 1.08996 * 109.47673 * 59.99834 * 12 10 9 26 26 H 1.09001 * 109.46626 * 299.99408 * 12 10 9 27 27 H 1.00899 * 110.99247 * 303.94930 * 13 12 10 28 28 H 1.09001 * 109.47267 * 59.99263 * 14 13 12 29 29 H 1.09004 * 109.47041 * 299.99667 * 14 13 12 30 30 H 1.09001 * 109.46832 * 59.99999 * 15 14 13 31 31 H 1.08993 * 109.47194 * 299.99521 * 15 14 13 32 32 H 1.09001 * 109.46801 * 300.00272 * 16 15 14 33 33 H 1.09001 * 109.46998 * 59.99868 * 16 15 14 34 34 H 0.96998 * 119.99962 * 0.02562 * 19 17 16 35 35 H 1.08997 * 115.55382 * 9.33363 * 20 19 17 36 36 H 1.08994 * 117.49898 * 0.02562 * 21 20 19 37 37 H 1.09003 * 117.49491 * 145.02442 * 21 20 19 38 38 H 1.08997 * 117.50444 * 252.51321 * 22 21 20 39 39 H 1.08998 * 117.52052 * 107.47472 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4456 2.6525 0.7002 6 1 3.5457 1.4400 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2034 -0.0011 10 6 4.0536 -2.3706 -0.0011 11 8 3.4472 -3.4211 -0.0011 12 6 5.5606 -2.3707 -0.0011 13 7 6.0503 -3.7557 -0.0017 14 6 7.5187 -3.7949 -0.0023 15 6 7.9900 -5.2505 -0.0023 16 6 9.5195 -5.2914 -0.0036 17 6 9.9837 -6.7251 -0.0030 18 8 9.1713 -7.6256 -0.0021 19 7 11.3017 -7.0067 -0.0044 20 6 11.7529 -8.4004 -0.0044 21 6 12.9064 -8.7695 0.9307 22 6 13.1401 -8.6939 -0.5794 23 1 -0.4850 0.8401 0.0004 24 1 3.8648 -0.3633 -0.0007 25 1 5.9241 -1.8569 0.8888 26 1 5.9239 -1.8569 -0.8911 27 1 5.6748 -4.2722 0.7795 28 1 7.8960 -3.2912 0.8876 29 1 7.8953 -3.2908 -0.8924 30 1 7.6126 -5.7546 -0.8921 31 1 7.6135 -5.7543 0.8879 32 1 9.8956 -4.7877 -0.8941 33 1 9.8972 -4.7872 0.8859 34 1 11.9515 -6.2865 -0.0055 35 1 10.9744 -9.1467 -0.1626 36 1 13.3291 -7.9754 1.5461 37 1 12.8866 -9.7588 1.3880 38 1 13.2742 -9.6333 -1.1156 39 1 13.7167 -7.8500 -0.9582 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092988470.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:20 Heat of formation + Delta-G solvation = -81.283012 kcal Electronic energy + Delta-G solvation = -19193.690284 eV Core-core repulsion = 15942.610086 eV Total energy + Delta-G solvation = -3251.080198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86540 -40.29197 -38.17112 -37.24280 -35.96014 -34.17025 -33.76406 -33.36299 -29.32615 -27.06405 -25.10243 -23.28014 -23.15040 -22.18954 -21.48217 -21.21980 -20.22383 -18.27254 -17.66438 -17.40199 -17.25754 -16.79753 -16.42556 -15.78737 -15.53721 -15.35516 -15.27009 -14.86166 -14.62539 -14.30101 -14.09307 -13.69076 -13.31261 -13.03414 -12.78822 -12.67084 -12.48880 -12.40938 -12.33193 -12.26360 -11.96493 -11.67837 -11.50985 -11.48192 -10.92246 -10.44414 -10.24935 -9.74010 -9.28427 -8.40974 -6.02447 1.30875 1.37253 1.46118 1.59120 1.95945 2.09844 2.24211 2.77112 2.98461 3.15082 3.44148 3.73337 3.83083 4.04035 4.05744 4.08209 4.16910 4.21454 4.44320 4.49371 4.59255 4.64683 4.74948 4.75871 4.78740 4.90066 5.02603 5.20022 5.23344 5.36712 5.53144 5.54774 5.91774 6.11048 6.39199 6.54780 6.60342 6.88203 7.27878 7.39799 7.97271 8.76867 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.066127 B = 0.002274 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 423.325087 B =12312.542271 C =12634.114944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.018 4.018 3 Si 0.969 3.031 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.229 1.229 7 C -0.331 4.331 8 H 0.052 0.948 9 N -0.590 5.590 10 C 0.445 3.555 11 O -0.618 6.618 12 C 0.064 3.936 13 N -0.698 5.698 14 C 0.065 3.935 15 C -0.100 4.100 16 C -0.124 4.124 17 C 0.509 3.491 18 O -0.591 6.591 19 N -0.691 5.691 20 C 0.046 3.954 21 C -0.185 4.185 22 C -0.172 4.172 23 H 0.279 0.721 24 H 0.391 0.609 25 H 0.081 0.919 26 H 0.118 0.882 27 H 0.341 0.659 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.126 0.874 33 H 0.125 0.875 34 H 0.419 0.581 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.991 -5.179 1.039 34.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.216 4.216 3 Si 0.789 3.211 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.152 1.152 7 C -0.461 4.461 8 H 0.070 0.930 9 N -0.232 5.232 10 C 0.233 3.767 11 O -0.503 6.503 12 C -0.068 4.068 13 N -0.331 5.331 14 C -0.063 4.063 15 C -0.139 4.139 16 C -0.164 4.164 17 C 0.298 3.702 18 O -0.471 6.471 19 N -0.342 5.342 20 C -0.060 4.060 21 C -0.224 4.224 22 C -0.210 4.210 23 H 0.089 0.911 24 H 0.227 0.773 25 H 0.098 0.902 26 H 0.136 0.864 27 H 0.159 0.841 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.257 0.743 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 32.766 -6.467 0.353 33.400 hybrid contribution -0.199 0.992 0.880 1.341 sum 32.567 -5.475 1.234 33.047 Atomic orbital electron populations 1.69816 1.08236 1.29302 1.50227 1.26188 0.96537 1.02917 0.95968 0.85308 0.79486 0.76341 0.80002 1.18066 1.20015 1.15198 1.19015 0.81624 0.94907 1.50529 0.92977 1.42016 1.05749 1.07612 1.67776 1.21126 0.91283 0.83260 0.81060 1.90551 1.71537 1.33008 1.55182 1.21639 0.89165 0.91770 1.04258 1.60034 1.09164 1.12137 1.51724 1.22046 0.85561 0.96370 1.02330 1.21198 0.94414 0.96111 1.02127 1.21599 0.95931 0.91553 1.07353 1.21370 0.82041 0.92638 0.74191 1.90720 1.54758 1.50323 1.51326 1.45303 1.07073 1.07510 1.74359 1.21602 0.92256 0.85128 1.06996 1.23487 1.01166 1.04092 0.93615 1.23453 0.96661 1.04655 0.96247 0.91124 0.77315 0.90172 0.86432 0.84057 0.92864 0.89123 0.93099 0.93293 0.85632 0.85681 0.74330 0.87328 0.87302 0.87801 0.87366 0.86805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.96 21.66 0.30 -56.84 16 2 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 3 Si 0.97 38.79 27.74 68.60 1.90 40.69 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 7 C -0.33 -19.83 10.16 84.04 0.85 -18.98 16 8 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 9 N -0.59 -28.24 5.09 -306.98 -1.56 -29.81 16 10 C 0.44 20.65 7.82 87.66 0.69 21.34 16 11 O -0.62 -35.82 15.78 -3.06 -0.05 -35.87 16 12 C 0.06 1.95 6.17 85.56 0.53 2.48 16 13 N -0.70 -21.45 6.13 -517.93 -3.17 -24.62 16 14 C 0.07 1.28 5.69 86.30 0.49 1.77 16 15 C -0.10 -2.11 4.76 30.60 0.15 -1.96 16 16 C -0.12 -1.53 5.70 29.85 0.17 -1.36 16 17 C 0.51 9.71 7.83 87.66 0.69 10.39 16 18 O -0.59 -18.13 15.55 -3.04 -0.05 -18.17 16 19 N -0.69 -8.47 5.57 -442.53 -2.46 -10.93 16 20 C 0.05 0.64 6.43 45.00 0.29 0.93 16 21 C -0.19 -1.62 10.46 30.59 0.32 -1.30 16 22 C -0.17 -1.33 10.46 30.60 0.32 -1.01 16 23 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 24 H 0.39 15.23 5.76 -92.71 -0.53 14.70 16 25 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 27 H 0.34 11.57 8.43 -89.69 -0.76 10.81 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.05 1.38 8.10 -2.39 -0.02 1.36 16 31 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.42 1.95 8.83 -92.71 -0.82 1.13 16 35 H 0.11 2.14 7.40 -2.39 -0.02 2.12 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -87.47 335.24 -1.22 -88.69 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -1.09 Total: 35.09 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 4.96 Total: 11.78 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.90 Total: -122.20 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.10 Total: -54.04 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 1.90 Total: 40.69 kcal Total: -87.47 -1.22 -88.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092988470.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.407 kcal (2) G-P(sol) polarization free energy of solvation -87.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds