Wall clock time and date at job start Mon Mar 30 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99986 * 2 1 4 4 H 1.48507 * 109.47163 * 239.99653 * 3 2 1 5 5 H 1.48497 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47224 * 120.00270 * 3 2 1 7 7 C 1.38815 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 192.84491 * 7 2 1 9 9 N 1.36938 * 119.99975 * 12.84233 * 7 2 1 10 10 C 1.46957 * 120.59686 * 215.58101 * 9 7 2 11 11 C 1.53372 * 108.63878 * 235.20413 * 10 9 7 12 12 N 1.46959 * 108.63401 * 310.57902 * 11 10 9 13 13 C 1.34777 * 120.59336 * 235.20155 * 12 11 10 14 14 O 1.21589 * 120.00108 * 4.91789 * 13 12 11 15 15 N 1.34784 * 119.99953 * 184.64153 * 13 12 11 16 16 C 1.46495 * 119.99626 * 175.35981 * 15 13 12 17 17 H 1.09000 * 110.46151 * 327.60929 * 16 15 13 18 18 C 1.54513 * 110.51172 * 205.00036 * 16 15 13 19 19 C 1.54481 * 104.06642 * 241.36056 * 18 16 15 20 20 O 1.44425 * 104.80142 * 23.97759 * 19 18 16 21 21 C 1.44435 * 105.27361 * 319.48893 * 20 19 18 22 22 C 1.46971 * 118.81588 * 55.47478 * 12 11 10 23 23 C 1.46973 * 120.59013 * 35.56070 * 9 7 2 24 24 H 0.97000 * 119.99446 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.61097 * 115.46046 * 10 9 7 26 26 H 1.09001 * 109.61217 * 354.95471 * 10 9 7 27 27 H 1.08998 * 109.61188 * 190.83261 * 11 10 9 28 28 H 1.09003 * 109.74849 * 70.40592 * 11 10 9 29 29 H 0.97003 * 119.99653 * 355.36625 * 15 13 12 30 30 H 1.09001 * 110.50582 * 0.02562 * 18 16 15 31 31 H 1.09004 * 110.51362 * 122.57382 * 18 16 15 32 32 H 1.08994 * 110.37289 * 142.80912 * 19 18 16 33 33 H 1.08998 * 110.36605 * 265.14694 * 19 18 16 34 34 H 1.08996 * 110.36916 * 281.68197 * 21 20 19 35 35 H 1.09002 * 110.36785 * 159.34612 * 21 20 19 36 36 H 1.09000 * 109.60455 * 64.26121 * 22 12 11 37 37 H 1.08996 * 109.61483 * 184.77811 * 22 12 11 38 38 H 1.08999 * 109.60645 * 244.54255 * 23 9 7 39 39 H 1.08998 * 109.61117 * 5.05173 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0700 -1.2139 0.2074 9 7 1.3513 -2.3731 -0.2647 10 6 1.7295 -3.6157 0.4227 11 6 2.0465 -4.6827 -0.6324 12 7 0.9481 -4.7191 -1.6081 13 6 0.2995 -5.8716 -1.8681 14 8 0.5603 -6.8733 -1.2301 15 7 -0.6422 -5.9124 -2.8316 16 6 -1.2747 -7.1858 -3.1840 17 1 -0.5706 -8.0085 -3.0590 18 6 -1.8060 -7.1434 -4.6343 19 6 -3.3288 -7.3541 -4.4826 20 8 -3.6288 -6.9231 -3.1372 21 6 -2.5394 -7.4172 -2.3277 22 6 0.5736 -3.4776 -2.2998 23 6 0.2528 -2.4095 -1.2404 24 1 -0.4849 0.8401 0.0004 25 1 0.9033 -3.9539 1.0481 26 1 2.6102 -3.4388 1.0402 27 1 2.1410 -5.6562 -0.1514 28 1 2.9785 -4.4334 -1.1399 29 1 -0.9009 -5.0985 -3.2916 30 1 -1.5975 -6.1750 -5.0891 31 1 -1.3644 -7.9450 -5.2264 32 1 -3.8701 -6.7444 -5.2060 33 1 -3.5805 -8.4071 -4.6088 34 1 -2.6702 -8.4798 -2.1234 35 1 -2.4745 -6.8559 -1.3956 36 1 1.4026 -3.1415 -2.9226 37 1 -0.3049 -3.6551 -2.9201 38 1 -0.6785 -2.6617 -0.7334 39 1 0.1584 -1.4360 -1.7214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094890713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:57 Heat of formation + Delta-G solvation = -35.342605 kcal Electronic energy + Delta-G solvation = -21440.445157 eV Core-core repulsion = 18191.357085 eV Total energy + Delta-G solvation = -3249.088072 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.30605 -39.02018 -36.80450 -34.45117 -33.80371 -31.56734 -30.69576 -30.09096 -28.58283 -26.67709 -23.80960 -23.10649 -22.76300 -21.43683 -20.55941 -19.19515 -18.04012 -16.81669 -16.38875 -16.10287 -15.77477 -15.19704 -14.91185 -14.71323 -14.02084 -13.79214 -13.48697 -13.46954 -13.24624 -13.07071 -12.49298 -12.08316 -11.82844 -11.66697 -11.58861 -11.36979 -11.16611 -10.82460 -10.75485 -10.49399 -10.27591 -10.14329 -10.05647 -9.86834 -9.62392 -8.94072 -8.57724 -8.13712 -6.60360 -5.86339 -3.38910 2.95014 3.33778 3.39703 3.40586 3.49039 3.86141 4.16767 4.37329 4.43818 4.69472 4.81591 4.96430 5.16953 5.28580 5.33567 5.42502 5.45115 5.60370 5.69605 5.77023 5.83056 5.87900 5.92523 6.10333 6.18302 6.35168 6.46630 6.57497 6.69835 6.81054 6.94646 7.13529 7.37159 7.42159 7.73855 8.28357 8.40880 8.91364 9.12811 9.72924 10.35088 11.21112 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.004477 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.781543 B = 6252.456333 C = 6750.587574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.011 3.989 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.131 3.869 11 C 0.113 3.887 12 N -0.614 5.614 13 C 0.705 3.295 14 O -0.605 6.605 15 N -0.741 5.741 16 C 0.134 3.866 17 H 0.102 0.898 18 C -0.163 4.163 19 C 0.044 3.956 20 O -0.374 6.374 21 C 0.033 3.967 22 C 0.086 3.914 23 C 0.163 3.837 24 H 0.256 0.744 25 H 0.023 0.977 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.398 0.602 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.025 0.975 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -12.332 -10.125 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.189 4.189 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.004 3.996 11 C -0.011 4.011 12 N -0.350 5.350 13 C 0.406 3.594 14 O -0.486 6.486 15 N -0.400 5.400 16 C 0.028 3.972 17 H 0.120 0.880 18 C -0.201 4.201 19 C -0.033 4.033 20 O -0.292 6.292 21 C -0.045 4.045 22 C -0.038 4.038 23 C 0.036 3.964 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.077 0.923 29 H 0.236 0.764 30 H 0.102 0.898 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.411 -12.755 -9.571 16.307 hybrid contribution 0.388 1.258 -0.332 1.357 sum -3.022 -11.497 -9.903 15.472 Atomic orbital electron populations 1.69984 1.05403 1.25905 1.53016 1.25276 0.95322 0.98654 0.99625 0.86353 0.78922 0.83062 0.78256 1.20843 1.21571 1.20710 1.19098 0.91224 0.83974 1.44910 0.91871 1.43852 1.39333 1.04377 1.43629 1.21345 0.98585 0.87072 0.92599 1.22093 0.87501 1.00820 0.90707 1.47222 1.36559 1.07113 1.44075 1.15881 0.79264 0.83793 0.80417 1.90847 1.70266 1.34414 1.53024 1.45349 1.42662 1.10404 1.41581 1.22069 0.94849 0.87407 0.92918 0.87993 1.23278 0.96508 1.03942 0.96417 1.23414 0.94355 0.99929 0.85638 1.89181 1.44960 1.76976 1.18119 1.23969 0.85259 0.99563 0.95739 1.22637 0.98794 0.85865 0.96553 1.21143 0.90193 0.96233 0.88800 0.93389 0.95855 0.91527 0.89950 0.92263 0.76446 0.89841 0.89427 0.88940 0.92129 0.91495 0.88376 0.91861 0.92127 0.95656 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 11.48 55.49 0.64 -24.84 16 2 C 0.01 0.30 4.97 -17.43 -0.09 0.21 16 3 Si 0.90 21.04 29.57 -169.99 -5.03 16.01 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -7.00 9.51 -15.06 -0.14 -7.14 16 8 H 0.06 1.65 7.86 -52.49 -0.41 1.24 16 9 N -0.59 -14.45 2.93 -171.76 -0.50 -14.95 16 10 C 0.13 2.80 6.67 -3.60 -0.02 2.78 16 11 C 0.11 2.13 6.60 -3.60 -0.02 2.10 16 12 N -0.61 -11.32 2.94 -177.94 -0.52 -11.84 16 13 C 0.70 12.67 8.29 -86.91 -0.72 11.94 16 14 O -0.61 -12.47 15.45 5.29 0.08 -12.38 16 15 N -0.74 -10.49 5.00 -57.14 -0.29 -10.78 16 16 C 0.13 1.59 3.44 -66.36 -0.23 1.36 16 17 H 0.10 1.27 7.63 -51.93 -0.40 0.87 16 18 C -0.16 -1.39 6.85 -25.16 -0.17 -1.56 16 19 C 0.04 0.38 7.63 37.93 0.29 0.67 16 20 O -0.37 -4.76 11.65 -35.23 -0.41 -5.17 16 21 C 0.03 0.41 7.35 37.93 0.28 0.69 16 22 C 0.09 1.54 6.59 -3.36 -0.02 1.52 16 23 C 0.16 3.71 5.46 -3.36 -0.02 3.69 16 24 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 1.36 7.93 -51.93 -0.41 0.94 16 27 H 0.08 1.52 6.99 -51.93 -0.36 1.16 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.40 5.12 5.85 -40.82 -0.24 4.88 16 30 H 0.08 0.68 7.70 -51.93 -0.40 0.28 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.43 8.06 -51.93 -0.42 1.01 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.90 5.60 -51.93 -0.29 0.61 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.21 6.43 -51.93 -0.33 1.88 16 LS Contribution 311.21 15.07 4.69 4.69 Total: -1.00 -31.63 311.21 -7.99 -39.62 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.78 Total: 3.38 kcal Atomic # 6 Polarization: 17.13 SS G_CDS: -0.87 Total: 16.26 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: -0.67 Total: -62.41 kcal Atomic # 8 Polarization: -17.22 SS G_CDS: -0.33 Total: -17.55 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.63 -7.99 -39.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.277 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds