Wall clock time and date at job start Mon Mar 30 2020 05:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99986 * 2 1 4 4 H 1.48507 * 109.47163 * 239.99653 * 3 2 1 5 5 H 1.48497 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47224 * 120.00270 * 3 2 1 7 7 C 1.38815 * 120.00176 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00149 * 192.84491 * 7 2 1 9 9 N 1.36938 * 119.99975 * 12.84233 * 7 2 1 10 10 C 1.46957 * 120.59686 * 215.58101 * 9 7 2 11 11 C 1.53372 * 108.63878 * 235.20413 * 10 9 7 12 12 N 1.46959 * 108.63401 * 310.57902 * 11 10 9 13 13 C 1.34777 * 120.59336 * 235.20155 * 12 11 10 14 14 O 1.21589 * 120.00108 * 4.91789 * 13 12 11 15 15 N 1.34784 * 119.99953 * 184.64153 * 13 12 11 16 16 C 1.46495 * 119.99626 * 175.35981 * 15 13 12 17 17 H 1.09000 * 110.46151 * 327.60929 * 16 15 13 18 18 C 1.54513 * 110.51172 * 205.00036 * 16 15 13 19 19 C 1.54481 * 104.06642 * 241.36056 * 18 16 15 20 20 O 1.44425 * 104.80142 * 23.97759 * 19 18 16 21 21 C 1.44435 * 105.27361 * 319.48893 * 20 19 18 22 22 C 1.46971 * 118.81588 * 55.47478 * 12 11 10 23 23 C 1.46973 * 120.59013 * 35.56070 * 9 7 2 24 24 H 0.97000 * 119.99446 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.61097 * 115.46046 * 10 9 7 26 26 H 1.09001 * 109.61217 * 354.95471 * 10 9 7 27 27 H 1.08998 * 109.61188 * 190.83261 * 11 10 9 28 28 H 1.09003 * 109.74849 * 70.40592 * 11 10 9 29 29 H 0.97003 * 119.99653 * 355.36625 * 15 13 12 30 30 H 1.09001 * 110.50582 * 0.02562 * 18 16 15 31 31 H 1.09004 * 110.51362 * 122.57382 * 18 16 15 32 32 H 1.08994 * 110.37289 * 142.80912 * 19 18 16 33 33 H 1.08998 * 110.36605 * 265.14694 * 19 18 16 34 34 H 1.08996 * 110.36916 * 281.68197 * 21 20 19 35 35 H 1.09002 * 110.36785 * 159.34612 * 21 20 19 36 36 H 1.09000 * 109.60455 * 64.26121 * 22 12 11 37 37 H 1.08996 * 109.61483 * 184.77811 * 22 12 11 38 38 H 1.08999 * 109.60645 * 244.54255 * 23 9 7 39 39 H 1.08998 * 109.61117 * 5.05173 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0700 -1.2139 0.2074 9 7 1.3513 -2.3731 -0.2647 10 6 1.7295 -3.6157 0.4227 11 6 2.0465 -4.6827 -0.6324 12 7 0.9481 -4.7191 -1.6081 13 6 0.2995 -5.8716 -1.8681 14 8 0.5603 -6.8733 -1.2301 15 7 -0.6422 -5.9124 -2.8316 16 6 -1.2747 -7.1858 -3.1840 17 1 -0.5706 -8.0085 -3.0590 18 6 -1.8060 -7.1434 -4.6343 19 6 -3.3288 -7.3541 -4.4826 20 8 -3.6288 -6.9231 -3.1372 21 6 -2.5394 -7.4172 -2.3277 22 6 0.5736 -3.4776 -2.2998 23 6 0.2528 -2.4095 -1.2404 24 1 -0.4849 0.8401 0.0004 25 1 0.9033 -3.9539 1.0481 26 1 2.6102 -3.4388 1.0402 27 1 2.1410 -5.6562 -0.1514 28 1 2.9785 -4.4334 -1.1399 29 1 -0.9009 -5.0985 -3.2916 30 1 -1.5975 -6.1750 -5.0891 31 1 -1.3644 -7.9450 -5.2264 32 1 -3.8701 -6.7444 -5.2060 33 1 -3.5805 -8.4071 -4.6088 34 1 -2.6702 -8.4798 -2.1234 35 1 -2.4745 -6.8559 -1.3956 36 1 1.4026 -3.1415 -2.9226 37 1 -0.3049 -3.6551 -2.9201 38 1 -0.6785 -2.6617 -0.7334 39 1 0.1584 -1.4360 -1.7214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094890713.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:57 Heat of formation + Delta-G solvation = -57.556916 kcal Electronic energy + Delta-G solvation = -21441.408442 eV Core-core repulsion = 18191.357085 eV Total energy + Delta-G solvation = -3250.051357 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56320 -40.11173 -38.43289 -35.71153 -35.50248 -33.24162 -32.03310 -31.51006 -29.61947 -28.38616 -25.54280 -24.54810 -23.90908 -22.62756 -21.88157 -20.68107 -19.56827 -18.13833 -17.82839 -17.18206 -16.94913 -16.67047 -16.34421 -16.06767 -15.51134 -15.30736 -15.22682 -15.01597 -14.78705 -14.27027 -13.74745 -13.31481 -13.20365 -12.94436 -12.73092 -12.65483 -12.52437 -12.49482 -12.25075 -12.08501 -12.02856 -11.85288 -11.66099 -11.17360 -10.95265 -10.59390 -10.17865 -9.63179 -8.56122 -7.88933 -5.46348 1.49975 1.50781 1.58000 1.65191 2.09447 2.50464 2.87331 3.04097 3.26547 3.54528 3.60477 3.86124 4.12460 4.16797 4.22999 4.25853 4.30358 4.35041 4.51092 4.58531 4.65587 4.74069 4.75065 4.84367 4.86045 4.95894 5.02743 5.07234 5.21082 5.46235 5.51298 5.58694 5.64860 5.82846 6.02388 6.39191 6.92937 7.12017 7.52132 7.76580 8.35161 9.15513 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.030702 B = 0.004477 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.781543 B = 6252.456333 C = 6750.587574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.038 4.038 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.273 4.273 8 H 0.067 0.933 9 N -0.606 5.606 10 C 0.131 3.869 11 C 0.125 3.875 12 N -0.620 5.620 13 C 0.702 3.298 14 O -0.633 6.633 15 N -0.729 5.729 16 C 0.128 3.872 17 H 0.098 0.902 18 C -0.151 4.151 19 C 0.039 3.961 20 O -0.400 6.400 21 C 0.034 3.966 22 C 0.104 3.896 23 C 0.169 3.831 24 H 0.252 0.748 25 H 0.003 0.997 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.405 0.595 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.093 0.907 38 H -0.005 1.005 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -13.022 -12.110 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.235 4.235 3 Si 0.798 3.202 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.203 1.203 7 C -0.403 4.403 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.005 3.995 11 C 0.000 4.000 12 N -0.356 5.356 13 C 0.404 3.596 14 O -0.515 6.515 15 N -0.387 5.387 16 C 0.022 3.978 17 H 0.116 0.884 18 C -0.189 4.189 19 C -0.038 4.038 20 O -0.319 6.319 21 C -0.044 4.044 22 C -0.021 4.021 23 C 0.042 3.958 24 H 0.061 0.939 25 H 0.021 0.979 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.244 0.756 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.013 0.987 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.908 -13.471 -11.591 18.008 hybrid contribution 0.171 1.410 0.319 1.455 sum -2.737 -12.062 -11.272 16.734 Atomic orbital electron populations 1.70143 1.06865 1.26286 1.54458 1.26016 0.96017 1.01755 0.99708 0.85314 0.77550 0.78835 0.78497 1.19831 1.22072 1.20282 1.19439 0.91632 0.84973 1.44287 0.91555 1.44124 1.39434 1.04808 1.44625 1.21399 0.98024 0.86777 0.93302 1.21892 0.88170 0.99729 0.90206 1.47247 1.36689 1.07469 1.44209 1.16023 0.79634 0.83127 0.80808 1.90825 1.71236 1.35285 1.54195 1.45339 1.41367 1.11752 1.40255 1.22290 0.94289 0.86045 0.95171 0.88391 1.23271 0.96127 1.05412 0.94111 1.23682 0.94676 1.01423 0.83970 1.89156 1.45129 1.77558 1.20058 1.23878 0.85780 0.99934 0.94797 1.22395 1.00585 0.84087 0.94995 1.20971 0.88685 0.96744 0.89355 0.93856 0.97884 0.90822 0.89600 0.90961 0.75611 0.89120 0.86854 0.87383 0.90268 0.89904 0.91393 0.90789 0.88885 0.98688 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 11.48 21.65 0.25 -53.63 16 2 C -0.04 -2.07 4.97 84.86 0.42 -1.65 16 3 Si 0.97 43.30 29.57 68.60 2.03 45.33 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.27 -14.62 9.51 84.03 0.80 -13.82 16 8 H 0.07 3.44 7.86 -2.91 -0.02 3.42 16 9 N -0.61 -30.03 2.93 -697.33 -2.04 -32.07 16 10 C 0.13 5.66 6.67 86.42 0.58 6.23 16 11 C 0.12 4.58 6.60 86.42 0.57 5.15 16 12 N -0.62 -22.22 2.94 -835.14 -2.46 -24.67 16 13 C 0.70 24.49 8.29 179.05 1.48 25.97 16 14 O -0.63 -25.68 15.45 -4.00 -0.06 -25.74 16 15 N -0.73 -19.42 5.00 -452.96 -2.26 -21.68 16 16 C 0.13 2.79 3.44 46.01 0.16 2.95 16 17 H 0.10 2.26 7.63 -2.39 -0.02 2.24 16 18 C -0.15 -2.07 6.85 31.61 0.22 -1.85 16 19 C 0.04 0.56 7.63 72.49 0.55 1.12 16 20 O -0.40 -9.60 11.65 -148.98 -1.74 -11.33 16 21 C 0.03 0.82 7.35 72.48 0.53 1.35 16 22 C 0.10 3.57 6.59 86.56 0.57 4.14 16 23 C 0.17 7.79 5.46 86.56 0.47 8.26 16 24 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 25 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 26 H 0.07 3.00 7.93 -2.39 -0.02 2.98 16 27 H 0.09 3.11 6.99 -2.39 -0.02 3.10 16 28 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.41 9.50 5.85 -92.71 -0.54 8.96 16 30 H 0.09 1.15 7.70 -2.39 -0.02 1.13 16 31 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 36 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.09 2.57 5.60 -2.39 -0.01 2.56 16 38 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 39 H 0.07 3.35 6.43 -2.39 -0.02 3.33 16 Total: -1.00 -68.86 311.21 0.59 -68.28 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.51 Total: 17.68 kcal Atomic # 6 Polarization: 31.49 SS G_CDS: 6.36 Total: 37.85 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -6.51 Total: -132.05 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.80 Total: -37.07 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -68.86 0.59 -68.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094890713.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.719 kcal (2) G-P(sol) polarization free energy of solvation -68.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds