Wall clock time and date at job start Mon Mar 30 2020 05:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.29908 * 2 1 4 4 C 1.50250 * 109.38621 * 240.25883 * 2 1 3 5 5 O 1.21281 * 118.62548 * 42.64176 * 4 2 1 6 6 N 1.33714 * 122.75351 * 222.64484 * 4 2 1 7 7 C 1.46010 * 122.92512 * 1.68446 * 6 4 2 8 8 C 1.52982 * 110.04151 * 341.84105 * 7 6 4 9 9 N 1.46897 * 109.38615 * 119.74179 * 2 1 3 10 10 C 1.46903 * 111.00080 * 47.08670 * 9 2 1 11 11 C 1.50702 * 109.46928 * 193.10238 * 10 9 2 12 12 O 1.21277 * 120.00561 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99502 * 180.02562 * 11 10 9 14 14 C 1.46490 * 120.00487 * 359.97438 * 13 11 10 15 15 C 1.46505 * 119.99642 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.46708 * 269.99668 * 15 13 11 17 17 H 1.08000 * 120.00120 * 359.72493 * 16 15 13 18 18 C 1.37876 * 119.99725 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00054 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47239 * 59.99325 * 20 18 16 22 22 H 1.48497 * 109.47387 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46913 * 299.99878 * 20 18 16 24 24 H 1.09001 * 109.46710 * 291.95564 * 1 2 3 25 25 H 1.09001 * 109.46802 * 51.95241 * 1 2 3 26 26 H 1.08995 * 109.46974 * 171.95630 * 1 2 3 27 27 H 0.96999 * 118.53941 * 181.66498 * 6 4 2 28 28 H 1.09000 * 109.37371 * 221.66381 * 7 6 4 29 29 H 1.08999 * 109.27878 * 101.95681 * 7 6 4 30 30 H 1.09005 * 109.59314 * 290.51480 * 8 7 6 31 31 H 1.08999 * 109.71835 * 170.14024 * 8 7 6 32 32 H 1.08998 * 109.46742 * 73.10587 * 10 9 2 33 33 H 1.08996 * 109.47369 * 313.10334 * 10 9 2 34 34 H 1.09004 * 109.47458 * 270.00356 * 14 13 11 35 35 H 1.09002 * 109.47178 * 29.99739 * 14 13 11 36 36 H 1.08995 * 109.47921 * 150.00276 * 14 13 11 37 37 H 1.08997 * 109.47024 * 150.00083 * 15 13 11 38 38 H 1.08999 * 109.47117 * 29.99199 * 15 13 11 39 39 H 0.97004 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0288 -0.7031 -1.2306 5 8 1.4829 -0.4778 -2.2900 6 7 3.0492 -1.5669 -1.2068 7 6 3.7497 -1.9341 0.0205 8 6 3.4713 -0.8996 1.1126 9 7 2.0176 -0.6874 1.2031 10 6 1.3115 -1.9597 1.4052 11 6 1.5950 -2.4767 2.7921 12 8 2.3139 -1.8472 3.5389 13 7 1.0494 -3.6388 3.2025 14 6 0.1805 -4.3990 2.3008 15 6 1.3244 -4.1412 4.5510 16 6 2.5494 -5.0185 4.5199 17 1 3.0682 -5.1888 3.5881 18 6 3.0041 -5.6088 5.6800 19 7 2.3691 -5.4059 6.8137 20 14 4.5228 -6.6957 5.6417 21 1 5.6850 -5.9057 5.1617 22 1 4.8016 -7.2051 7.0084 23 1 4.2895 -7.8401 4.7245 24 1 -0.3633 0.3842 0.9532 25 1 -0.3633 0.6334 -0.8093 26 1 -0.3633 -1.0175 -0.1438 27 1 3.3367 -1.9677 -2.0420 28 1 4.8215 -1.9757 -0.1735 29 1 3.4041 -2.9129 0.3531 30 1 3.9629 0.0400 0.8599 31 1 3.8479 -1.2635 2.0685 32 1 1.6550 -2.6866 0.6692 33 1 0.2393 -1.8028 1.2880 34 1 -0.8524 -4.0775 2.4346 35 1 0.4848 -4.2231 1.2690 36 1 0.2624 -5.4619 2.5275 37 1 0.4714 -4.7207 4.9038 38 1 1.4963 -3.3010 5.2237 39 1 2.6893 -5.8209 7.6299 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104149458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:42 Heat of formation + Delta-G solvation = -45.560541 kcal Electronic energy + Delta-G solvation = -21746.565182 eV Core-core repulsion = 18497.034027 eV Total energy + Delta-G solvation = -3249.531155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.08142 -38.92740 -37.12840 -34.92866 -34.73026 -32.65308 -31.28046 -29.33463 -27.83811 -27.05288 -25.68503 -23.72087 -22.94143 -22.29120 -19.43651 -18.02896 -17.55150 -17.03933 -16.62276 -16.34256 -15.89966 -15.51233 -15.11183 -14.61216 -14.38255 -13.97110 -13.93480 -13.30909 -13.10057 -12.63627 -12.42218 -12.28343 -12.20678 -11.94640 -11.81570 -11.77344 -11.31004 -11.17880 -11.11299 -10.89433 -10.59207 -10.45841 -10.18507 -9.67893 -9.29944 -8.96520 -8.46634 -8.24970 -7.66766 -6.07376 -4.12638 2.42856 2.98051 3.28104 3.32727 3.33651 3.40524 3.52160 4.14476 4.31753 4.41285 4.66968 4.78661 4.88164 5.05539 5.07459 5.16238 5.25577 5.30790 5.42329 5.62096 5.67016 5.70335 5.72130 5.88823 5.99185 6.00394 6.15753 6.47421 6.70275 6.82761 7.06288 7.08217 7.42085 7.50846 7.88549 7.99613 8.19789 8.38600 8.86532 9.07883 9.52516 11.00583 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.005050 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.186234 B = 5543.679238 C = 5918.198381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.068 3.932 3 H 0.119 0.881 4 C 0.490 3.510 5 O -0.553 6.553 6 N -0.721 5.721 7 C 0.067 3.933 8 C 0.034 3.966 9 N -0.500 5.500 10 C 0.017 3.983 11 C 0.508 3.492 12 O -0.523 6.523 13 N -0.604 5.604 14 C 0.083 3.917 15 C 0.247 3.753 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.278 1.278 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.059 0.941 27 H 0.397 0.603 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.064 0.936 33 H 0.106 0.894 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.031 0.969 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 6.564 -13.826 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 H 0.137 0.863 4 C 0.275 3.725 5 O -0.431 6.431 6 N -0.374 5.374 7 C -0.059 4.059 8 C -0.094 4.094 9 N -0.223 5.223 10 C -0.114 4.114 11 C 0.293 3.707 12 O -0.399 6.399 13 N -0.337 5.337 14 C -0.062 4.062 15 C 0.128 3.872 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.725 3.275 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.203 1.203 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.233 0.767 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.140 0.860 32 H 0.082 0.918 33 H 0.124 0.876 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.641 7.366 -13.116 15.132 hybrid contribution 1.238 -1.599 -1.032 2.271 sum -0.402 5.766 -14.148 15.283 Atomic orbital electron populations 1.21824 0.91427 1.02902 1.03543 1.22012 0.98050 0.99534 0.84747 0.86298 1.21382 0.79444 0.79386 0.92292 1.90723 1.56552 1.63738 1.32043 1.45704 1.34525 1.45781 1.11404 1.22224 0.97931 1.00469 0.85263 1.22742 0.88269 0.98629 0.99797 1.62312 1.04138 1.21496 1.34355 1.22400 1.01096 0.91071 0.96843 1.20006 0.81217 0.81327 0.88151 1.90646 1.36699 1.57081 1.55506 1.48157 1.47392 1.20888 1.17275 1.21638 0.93496 0.98080 0.92958 1.19283 0.96139 0.95037 0.76791 1.21363 1.11798 1.28974 0.94455 0.92656 1.24929 0.97151 0.96691 0.95260 1.69921 1.40130 1.44154 0.99043 0.86574 0.83283 0.80531 0.77090 1.20208 1.21150 1.20326 0.90199 0.90716 0.92185 0.76738 0.89642 0.90871 0.89780 0.86037 0.91844 0.87621 0.93624 0.92903 0.90654 0.95054 0.93713 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 7.79 37.16 0.29 -1.18 16 2 C 0.07 0.80 3.02 -69.08 -0.21 0.59 16 3 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.49 6.27 6.88 -11.68 -0.08 6.19 16 5 O -0.55 -8.72 17.22 5.56 0.10 -8.63 16 6 N -0.72 -7.84 5.38 -61.07 -0.33 -8.17 16 7 C 0.07 0.71 6.44 -4.32 -0.03 0.68 16 8 C 0.03 0.42 5.66 -3.68 -0.02 0.40 16 9 N -0.50 -6.76 4.58 -229.50 -1.05 -7.82 16 10 C 0.02 0.24 3.08 -4.97 -0.02 0.22 16 11 C 0.51 9.89 7.45 -10.98 -0.08 9.81 16 12 O -0.52 -12.26 14.24 5.56 0.08 -12.19 16 13 N -0.60 -12.22 2.86 -182.95 -0.52 -12.74 16 14 C 0.08 1.25 10.24 59.84 0.61 1.86 16 15 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 16 C -0.53 -14.43 9.39 -34.44 -0.32 -14.75 16 17 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.07 0.75 8.06 -51.93 -0.42 0.34 16 26 H 0.06 0.64 6.57 -51.93 -0.34 0.29 16 27 H 0.40 3.81 8.84 -40.82 -0.36 3.45 16 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.87 6.64 -51.93 -0.35 0.52 16 30 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.12 1.88 6.37 -51.93 -0.33 1.55 16 32 H 0.06 0.85 4.82 -51.93 -0.25 0.60 16 33 H 0.11 1.35 5.53 -51.93 -0.29 1.06 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 36 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 37 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 312.60 15.07 4.71 4.71 Total: -1.00 -33.39 312.60 -6.83 -40.22 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.55 Total: 2.02 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: 0.02 Total: 11.68 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -1.17 Total: -54.03 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.17 Total: -20.81 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.39 -6.83 -40.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104149458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.341 kcal (2) G-P(sol) polarization free energy of solvation -33.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds