Wall clock time and date at job start Mon Mar 30 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.29908 * 2 1 4 4 C 1.50250 * 109.38621 * 240.25883 * 2 1 3 5 5 O 1.21281 * 118.62548 * 42.64176 * 4 2 1 6 6 N 1.33714 * 122.75351 * 222.64484 * 4 2 1 7 7 C 1.46010 * 122.92512 * 1.68446 * 6 4 2 8 8 C 1.52982 * 110.04151 * 341.84105 * 7 6 4 9 9 N 1.46897 * 109.38615 * 119.74179 * 2 1 3 10 10 C 1.46903 * 111.00080 * 47.08670 * 9 2 1 11 11 C 1.50702 * 109.46928 * 193.10238 * 10 9 2 12 12 O 1.21277 * 120.00561 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99502 * 180.02562 * 11 10 9 14 14 C 1.46490 * 120.00487 * 359.97438 * 13 11 10 15 15 C 1.46505 * 119.99642 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.46708 * 269.99668 * 15 13 11 17 17 H 1.08000 * 120.00120 * 359.72493 * 16 15 13 18 18 C 1.37876 * 119.99725 * 180.02562 * 16 15 13 19 19 N 1.31516 * 120.00054 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99983 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47239 * 59.99325 * 20 18 16 22 22 H 1.48497 * 109.47387 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46913 * 299.99878 * 20 18 16 24 24 H 1.09001 * 109.46710 * 291.95564 * 1 2 3 25 25 H 1.09001 * 109.46802 * 51.95241 * 1 2 3 26 26 H 1.08995 * 109.46974 * 171.95630 * 1 2 3 27 27 H 0.96999 * 118.53941 * 181.66498 * 6 4 2 28 28 H 1.09000 * 109.37371 * 221.66381 * 7 6 4 29 29 H 1.08999 * 109.27878 * 101.95681 * 7 6 4 30 30 H 1.09005 * 109.59314 * 290.51480 * 8 7 6 31 31 H 1.08999 * 109.71835 * 170.14024 * 8 7 6 32 32 H 1.08998 * 109.46742 * 73.10587 * 10 9 2 33 33 H 1.08996 * 109.47369 * 313.10334 * 10 9 2 34 34 H 1.09004 * 109.47458 * 270.00356 * 14 13 11 35 35 H 1.09002 * 109.47178 * 29.99739 * 14 13 11 36 36 H 1.08995 * 109.47921 * 150.00276 * 14 13 11 37 37 H 1.08997 * 109.47024 * 150.00083 * 15 13 11 38 38 H 1.08999 * 109.47117 * 29.99199 * 15 13 11 39 39 H 0.97004 * 119.99814 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8903 1.0287 0.0000 4 6 2.0288 -0.7031 -1.2306 5 8 1.4829 -0.4778 -2.2900 6 7 3.0492 -1.5669 -1.2068 7 6 3.7497 -1.9341 0.0205 8 6 3.4713 -0.8996 1.1126 9 7 2.0176 -0.6874 1.2031 10 6 1.3115 -1.9597 1.4052 11 6 1.5950 -2.4767 2.7921 12 8 2.3139 -1.8472 3.5389 13 7 1.0494 -3.6388 3.2025 14 6 0.1805 -4.3990 2.3008 15 6 1.3244 -4.1412 4.5510 16 6 2.5494 -5.0185 4.5199 17 1 3.0682 -5.1888 3.5881 18 6 3.0041 -5.6088 5.6800 19 7 2.3691 -5.4059 6.8137 20 14 4.5228 -6.6957 5.6417 21 1 5.6850 -5.9057 5.1617 22 1 4.8016 -7.2051 7.0084 23 1 4.2895 -7.8401 4.7245 24 1 -0.3633 0.3842 0.9532 25 1 -0.3633 0.6334 -0.8093 26 1 -0.3633 -1.0175 -0.1438 27 1 3.3367 -1.9677 -2.0420 28 1 4.8215 -1.9757 -0.1735 29 1 3.4041 -2.9129 0.3531 30 1 3.9629 0.0400 0.8599 31 1 3.8479 -1.2635 2.0685 32 1 1.6550 -2.6866 0.6692 33 1 0.2393 -1.8028 1.2880 34 1 -0.8524 -4.0775 2.4346 35 1 0.4848 -4.2231 1.2690 36 1 0.2624 -5.4619 2.5275 37 1 0.4714 -4.7207 4.9038 38 1 1.4963 -3.3010 5.2237 39 1 2.6893 -5.8209 7.6299 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104149458.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:41 Heat of formation + Delta-G solvation = -72.340654 kcal Electronic energy + Delta-G solvation = -21747.726455 eV Core-core repulsion = 18497.034027 eV Total energy + Delta-G solvation = -3250.692428 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.12175 -40.38452 -38.28631 -36.48440 -35.80353 -34.68932 -32.27004 -30.78725 -29.23517 -28.19992 -27.20555 -25.19312 -24.01033 -23.65923 -20.69023 -19.31130 -18.66270 -18.59928 -18.06823 -17.62577 -17.05594 -16.96730 -16.41857 -16.13560 -15.70384 -15.46061 -14.96316 -14.47478 -14.30321 -14.08230 -13.77102 -13.68612 -13.42067 -13.17377 -13.11519 -12.95113 -12.83232 -12.71414 -12.52939 -12.22503 -12.13883 -12.09185 -11.68842 -11.49212 -10.61056 -10.51890 -10.22523 -9.37687 -9.31665 -8.18907 -6.33776 1.39401 1.42918 1.44937 1.50291 1.87155 2.04231 2.23995 2.42526 2.92792 3.10918 3.38122 3.67824 3.74581 3.86780 4.04375 4.11066 4.19921 4.26142 4.42980 4.49547 4.71524 4.73664 4.84958 4.86264 4.94504 4.97559 5.04348 5.19037 5.26951 5.57505 5.59176 5.70648 5.87228 5.90444 6.09366 6.14331 6.73626 6.83061 7.05924 7.32276 7.54682 8.87842 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028100 B = 0.005050 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.186234 B = 5543.679238 C = 5918.198381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.133 0.867 4 C 0.491 3.509 5 O -0.584 6.584 6 N -0.711 5.711 7 C 0.075 3.925 8 C 0.032 3.968 9 N -0.514 5.514 10 C 0.034 3.966 11 C 0.501 3.499 12 O -0.572 6.572 13 N -0.612 5.612 14 C 0.078 3.922 15 C 0.261 3.739 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.966 3.034 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.262 1.262 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.406 0.594 28 H 0.112 0.888 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.127 0.873 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.021 0.979 38 H -0.001 1.001 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.180 6.151 -15.915 17.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 H 0.150 0.850 4 C 0.277 3.723 5 O -0.464 6.464 6 N -0.363 5.363 7 C -0.051 4.051 8 C -0.096 4.096 9 N -0.238 5.238 10 C -0.096 4.096 11 C 0.289 3.711 12 O -0.451 6.451 13 N -0.345 5.345 14 C -0.064 4.064 15 C 0.140 3.860 16 C -0.578 4.578 17 H 0.074 0.926 18 C -0.191 4.191 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.207 1.207 23 H -0.187 1.187 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.242 0.758 28 H 0.130 0.870 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.017 0.983 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.272 6.932 -15.248 16.798 hybrid contribution 1.105 -1.424 -0.363 1.838 sum -0.167 5.508 -15.611 16.555 Atomic orbital electron populations 1.21826 0.90516 1.03191 1.04007 1.22078 0.98794 0.99723 0.83322 0.84985 1.21509 0.79416 0.79387 0.92024 1.90719 1.57689 1.64932 1.33067 1.45624 1.33791 1.45046 1.11824 1.22153 0.99410 0.99047 0.84459 1.22667 0.87916 1.00027 0.98948 1.62252 1.04671 1.21195 1.35696 1.22247 1.02501 0.91789 0.93091 1.20908 0.79921 0.80462 0.89784 1.90623 1.38713 1.58371 1.57366 1.48157 1.48326 1.21819 1.16168 1.21902 0.93976 0.97082 0.93478 1.18735 0.95265 0.92865 0.79184 1.21655 1.12435 1.29122 0.94573 0.92629 1.25845 1.00305 0.98134 0.94828 1.70051 1.41870 1.45280 0.99726 0.85490 0.79089 0.78886 0.77475 1.20000 1.20712 1.18653 0.89780 0.90161 0.92015 0.75754 0.87004 0.91797 0.87969 0.89277 0.90335 0.85494 0.91117 0.89604 0.91401 0.96141 0.98256 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.79 71.98 0.56 -2.01 16 2 C 0.07 1.51 3.02 44.03 0.13 1.65 16 3 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.49 11.32 6.88 87.68 0.60 11.92 16 5 O -0.58 -17.14 17.22 -3.03 -0.05 -17.19 16 6 N -0.71 -13.48 5.38 -466.10 -2.51 -15.99 16 7 C 0.07 1.41 6.44 86.47 0.56 1.97 16 8 C 0.03 0.77 5.66 86.24 0.49 1.26 16 9 N -0.51 -13.09 4.58 -880.01 -4.03 -17.12 16 10 C 0.03 0.91 3.08 85.56 0.26 1.18 16 11 C 0.50 19.50 7.45 87.66 0.65 20.15 16 12 O -0.57 -27.64 14.24 -3.02 -0.04 -27.68 16 13 N -0.61 -24.76 2.86 -851.13 -2.43 -27.19 16 14 C 0.08 2.21 10.24 127.77 1.31 3.52 16 15 C 0.26 13.70 5.16 85.63 0.44 14.14 16 16 C -0.54 -30.00 9.39 25.60 0.24 -29.76 16 17 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.44 5.46 84.65 0.46 0.90 16 19 N -0.93 -55.38 13.29 21.45 0.28 -55.10 16 20 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 24 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 26 H 0.06 1.12 6.57 -2.39 -0.02 1.11 16 27 H 0.41 6.63 8.84 -92.71 -0.82 5.81 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.37 6.64 -2.39 -0.02 1.35 16 30 H 0.10 2.02 8.08 -2.38 -0.02 2.00 16 31 H 0.09 2.79 6.37 -2.39 -0.02 2.77 16 32 H 0.08 1.89 4.82 -2.39 -0.01 1.87 16 33 H 0.13 2.87 5.53 -2.39 -0.01 2.86 16 34 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.09 1.87 6.44 -2.39 -0.02 1.85 16 36 H 0.07 2.04 8.07 -2.39 -0.02 2.02 16 37 H 0.02 1.10 8.07 -2.39 -0.02 1.08 16 38 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 39 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -74.20 312.60 -0.79 -74.99 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.25 Total: 14.79 kcal Atomic # 6 Polarization: 19.21 SS G_CDS: 5.71 Total: 24.92 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -8.68 Total: -115.39 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.10 Total: -44.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -74.20 -0.79 -74.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104149458.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.652 kcal (2) G-P(sol) polarization free energy of solvation -74.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds