Wall clock time and date at job start Mon Mar 30 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00533 * 2 1 4 4 C 1.52996 * 109.47326 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46769 * 64.99907 * 4 3 2 6 6 C 1.46495 * 120.00367 * 269.99725 * 5 4 3 7 7 C 1.50700 * 109.47552 * 274.86599 * 6 5 4 8 8 H 1.08000 * 119.99300 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00026 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99775 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00119 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47209 * 90.00088 * 11 9 7 13 13 H 1.48500 * 109.46804 * 210.00248 * 11 9 7 14 14 H 1.48498 * 109.46890 * 329.99867 * 11 9 7 15 15 C 1.34784 * 119.99756 * 90.00368 * 5 4 3 16 16 O 1.21747 * 119.99768 * 5.34847 * 15 5 4 17 17 C 1.41787 * 119.99945 * 185.34629 * 15 5 4 18 18 C 1.33462 * 118.78543 * 75.47395 * 17 15 5 19 19 O 1.34355 * 123.07885 * 180.15580 * 18 17 15 20 20 C 1.45351 * 117.48175 * 343.64768 * 19 18 17 21 21 C 1.53482 * 108.26517 * 47.47623 * 20 19 18 22 22 C 1.50412 * 118.79138 * 255.19883 * 17 15 5 23 23 H 1.09005 * 109.47021 * 59.99337 * 1 2 3 24 24 H 1.08997 * 109.48046 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46855 * 300.00174 * 1 2 3 26 26 H 1.09003 * 109.46621 * 59.99967 * 3 2 1 27 27 H 1.08998 * 109.47257 * 300.00107 * 3 2 1 28 28 H 1.09004 * 109.47011 * 305.00669 * 4 3 2 29 29 H 1.08995 * 109.47103 * 185.00087 * 4 3 2 30 30 H 1.09005 * 109.46691 * 34.86756 * 6 5 4 31 31 H 1.09000 * 109.47186 * 154.86268 * 6 5 4 32 32 H 0.96998 * 120.00067 * 179.97438 * 10 9 7 33 33 H 1.07994 * 118.45898 * 0.12953 * 18 17 15 34 34 H 1.09000 * 109.70581 * 167.16557 * 20 19 18 35 35 H 1.08995 * 109.70365 * 287.74347 * 20 19 18 36 36 H 1.09000 * 109.70866 * 56.99274 * 21 20 19 37 37 H 1.08998 * 109.70601 * 177.60924 * 21 20 19 38 38 H 1.08999 * 109.45752 * 282.64212 * 22 17 15 39 39 H 1.08999 * 109.45554 * 42.58059 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.4610 -1.3090 -0.8283 8 1 6.1562 -0.5631 -0.4723 9 6 5.8133 -2.6419 -0.8154 10 7 6.9959 -3.0052 -0.3690 11 14 4.6111 -3.9319 -1.4319 12 1 4.8188 -4.1472 -2.8864 13 1 4.8378 -5.2071 -0.7054 14 1 3.2211 -3.4669 -1.1938 15 6 4.2634 1.3327 -2.3201 16 8 4.2503 2.5459 -2.2184 17 6 4.5803 0.7288 -3.5631 18 6 3.5940 0.2017 -4.2916 19 8 3.7967 -0.3934 -5.4790 20 6 5.0643 -0.1456 -6.1457 21 6 6.1915 -0.3338 -5.1212 22 6 6.0148 0.7114 -4.0152 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8899 28 1 3.8508 0.5682 0.8427 29 1 3.9785 2.1763 0.0902 30 1 3.3295 -1.3642 -0.7381 31 1 3.9992 -1.2039 -2.3795 32 1 7.2437 -3.9429 -0.3595 33 1 2.5858 0.2558 -3.9084 34 1 5.1920 -0.8515 -6.9664 35 1 5.0837 0.8737 -6.5312 36 1 6.1358 -1.3347 -4.6930 37 1 7.1571 -0.1948 -5.6075 38 1 6.2867 1.6949 -4.3983 39 1 6.6581 0.4599 -3.1720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107781971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:09 Heat of formation + Delta-G solvation = -100.563638 kcal Electronic energy + Delta-G solvation = -21973.227791 eV Core-core repulsion = 18689.018772 eV Total energy + Delta-G solvation = -3284.209019 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16979 -38.74361 -37.45279 -34.90513 -33.66993 -32.47894 -31.61496 -29.67963 -27.53580 -26.12986 -25.35281 -24.02693 -22.51938 -22.28964 -19.72963 -18.03173 -16.98449 -16.94254 -16.39056 -16.08782 -15.85165 -15.40873 -15.08297 -14.65365 -14.21768 -13.91224 -13.75970 -13.31297 -12.93910 -12.74797 -12.53678 -12.38502 -12.09160 -11.83264 -11.64767 -11.56630 -11.06134 -10.89239 -10.75055 -10.57869 -10.51024 -10.27874 -10.15623 -9.54074 -9.48531 -9.12679 -8.62208 -7.92724 -7.65181 -6.11539 -4.10526 2.28705 3.24205 3.26954 3.34513 3.39369 3.59351 4.02374 4.11378 4.38059 4.97870 5.02600 5.21474 5.22676 5.31287 5.38892 5.48248 5.50593 5.55531 5.58443 5.66498 5.67582 5.75677 5.77745 5.96474 6.06967 6.28526 6.37030 6.46182 6.61557 6.63066 6.74000 6.95988 7.37791 7.45596 7.59828 7.62600 8.20177 8.51795 8.87845 8.96791 9.49562 11.01282 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.010090 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.664668 B = 2774.407492 C = 3991.254205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.048 3.952 4 C 0.119 3.881 5 N -0.577 5.577 6 C 0.209 3.791 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.076 3.924 10 N -0.896 5.896 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.261 1.261 15 C 0.572 3.428 16 O -0.575 6.575 17 C -0.250 4.250 18 C 0.084 3.916 19 O -0.319 6.319 20 C 0.057 3.943 21 C -0.156 4.156 22 C -0.058 4.058 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.157 0.843 34 H 0.101 0.899 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.496 5.061 -6.412 11.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.030 4.030 4 C -0.005 4.005 5 N -0.306 5.306 6 C 0.088 3.912 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.126 4.126 10 N -0.535 5.535 11 Si 0.693 3.307 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.185 1.185 15 C 0.361 3.639 16 O -0.457 6.457 17 C -0.255 4.255 18 C 0.019 3.981 19 O -0.231 6.231 20 C -0.017 4.017 21 C -0.193 4.193 22 C -0.095 4.095 23 H 0.054 0.946 24 H 0.101 0.899 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.174 0.826 34 H 0.119 0.881 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.402 5.194 -6.418 11.780 hybrid contribution -0.508 -0.577 -0.063 0.771 sum -8.910 4.617 -6.481 11.946 Atomic orbital electron populations 1.22694 0.82137 1.02359 0.99337 1.88037 1.18704 1.27715 1.95238 1.23059 0.95297 0.84759 0.99861 1.21369 0.90791 1.00014 0.88338 1.47975 1.63321 1.09144 1.10177 1.19885 0.98155 0.75276 0.97920 1.21363 0.99217 0.93557 1.42804 0.90695 1.24807 0.94956 0.98186 0.94670 1.69900 1.19946 1.17039 1.46576 0.86972 0.82692 0.81596 0.79405 1.19963 1.21135 1.18489 1.16805 0.76295 0.86326 0.84433 1.90724 1.54941 1.14264 1.85788 1.19957 0.97023 1.10525 0.97950 1.22191 0.98065 0.92599 0.85282 1.86169 1.38211 1.66897 1.31851 1.23414 0.82045 1.01642 0.94600 1.22169 0.98555 1.01584 0.97022 1.20081 0.92182 0.98338 0.98931 0.94604 0.89948 0.94533 0.92934 0.93478 0.89104 0.89100 0.93819 0.94972 0.92603 0.82644 0.88079 0.91593 0.89743 0.90048 0.91325 0.89085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.46 9.46 -35.23 -0.33 -6.79 16 3 C 0.05 0.76 6.28 37.16 0.23 1.00 16 4 C 0.12 2.21 5.87 -4.04 -0.02 2.19 16 5 N -0.58 -12.31 2.42 -178.42 -0.43 -12.74 16 6 C 0.21 4.88 4.00 -5.20 -0.02 4.86 16 7 C -0.53 -14.44 9.94 -34.44 -0.34 -14.78 16 8 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -26.56 13.96 55.43 0.77 -25.78 16 11 Si 0.87 20.81 27.47 -169.99 -4.67 16.14 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 15 C 0.57 12.20 6.63 -14.90 -0.10 12.10 16 16 O -0.58 -13.23 16.64 5.15 0.09 -13.14 16 17 C -0.25 -4.83 4.03 -105.08 -0.42 -5.25 16 18 C 0.08 1.46 9.29 29.06 0.27 1.73 16 19 O -0.32 -5.15 10.48 -14.90 -0.16 -5.31 16 20 C 0.06 0.75 7.15 37.41 0.27 1.02 16 21 C -0.16 -2.31 6.23 -26.38 -0.16 -2.47 16 22 C -0.06 -1.02 5.89 -27.92 -0.16 -1.19 16 23 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.74 8.07 -51.93 -0.42 1.32 16 29 H 0.09 1.64 7.35 -51.93 -0.38 1.26 16 30 H 0.04 1.05 6.10 -51.93 -0.32 0.74 16 31 H 0.03 0.75 5.13 -51.93 -0.27 0.48 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.16 2.52 7.98 -52.49 -0.42 2.10 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -32.34 323.53 -5.35 -37.69 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.04 Total: 2.31 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 0.55 Total: 2.74 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.34 Total: -38.52 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.40 Total: -25.25 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.67 Total: 16.14 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.34 -5.35 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107781971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.869 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds