Wall clock time and date at job start Mon Mar 30 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00533 * 2 1 4 4 C 1.52996 * 109.47326 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46769 * 64.99907 * 4 3 2 6 6 C 1.46495 * 120.00367 * 269.99725 * 5 4 3 7 7 C 1.50700 * 109.47552 * 274.86599 * 6 5 4 8 8 H 1.08000 * 119.99300 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00026 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99775 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00119 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47209 * 90.00088 * 11 9 7 13 13 H 1.48500 * 109.46804 * 210.00248 * 11 9 7 14 14 H 1.48498 * 109.46890 * 329.99867 * 11 9 7 15 15 C 1.34784 * 119.99756 * 90.00368 * 5 4 3 16 16 O 1.21747 * 119.99768 * 5.34847 * 15 5 4 17 17 C 1.41787 * 119.99945 * 185.34629 * 15 5 4 18 18 C 1.33462 * 118.78543 * 75.47395 * 17 15 5 19 19 O 1.34355 * 123.07885 * 180.15580 * 18 17 15 20 20 C 1.45351 * 117.48175 * 343.64768 * 19 18 17 21 21 C 1.53482 * 108.26517 * 47.47623 * 20 19 18 22 22 C 1.50412 * 118.79138 * 255.19883 * 17 15 5 23 23 H 1.09005 * 109.47021 * 59.99337 * 1 2 3 24 24 H 1.08997 * 109.48046 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.46855 * 300.00174 * 1 2 3 26 26 H 1.09003 * 109.46621 * 59.99967 * 3 2 1 27 27 H 1.08998 * 109.47257 * 300.00107 * 3 2 1 28 28 H 1.09004 * 109.47011 * 305.00669 * 4 3 2 29 29 H 1.08995 * 109.47103 * 185.00087 * 4 3 2 30 30 H 1.09005 * 109.46691 * 34.86756 * 6 5 4 31 31 H 1.09000 * 109.47186 * 154.86268 * 6 5 4 32 32 H 0.96998 * 120.00067 * 179.97438 * 10 9 7 33 33 H 1.07994 * 118.45898 * 0.12953 * 18 17 15 34 34 H 1.09000 * 109.70581 * 167.16557 * 20 19 18 35 35 H 1.08995 * 109.70365 * 287.74347 * 20 19 18 36 36 H 1.09000 * 109.70866 * 56.99274 * 21 20 19 37 37 H 1.08998 * 109.70601 * 177.60924 * 21 20 19 38 38 H 1.08999 * 109.45752 * 282.64212 * 22 17 15 39 39 H 1.08999 * 109.45554 * 42.58059 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9766 0.5637 -1.2509 6 6 4.1062 -0.8927 -1.3404 7 6 5.4610 -1.3090 -0.8283 8 1 6.1562 -0.5631 -0.4723 9 6 5.8133 -2.6419 -0.8154 10 7 6.9959 -3.0052 -0.3690 11 14 4.6111 -3.9319 -1.4319 12 1 4.8188 -4.1472 -2.8864 13 1 4.8378 -5.2071 -0.7054 14 1 3.2211 -3.4669 -1.1938 15 6 4.2634 1.3327 -2.3201 16 8 4.2503 2.5459 -2.2184 17 6 4.5803 0.7288 -3.5631 18 6 3.5940 0.2017 -4.2916 19 8 3.7967 -0.3934 -5.4790 20 6 5.0643 -0.1456 -6.1457 21 6 6.1915 -0.3338 -5.1212 22 6 6.0148 0.7114 -4.0152 23 1 -0.3633 0.5140 -0.8900 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6888 1.8463 -0.8899 28 1 3.8508 0.5682 0.8427 29 1 3.9785 2.1763 0.0902 30 1 3.3295 -1.3642 -0.7381 31 1 3.9992 -1.2039 -2.3795 32 1 7.2437 -3.9429 -0.3595 33 1 2.5858 0.2558 -3.9084 34 1 5.1920 -0.8515 -6.9664 35 1 5.0837 0.8737 -6.5312 36 1 6.1358 -1.3347 -4.6930 37 1 7.1571 -0.1948 -5.6075 38 1 6.2867 1.6949 -4.3983 39 1 6.6581 0.4599 -3.1720 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107781971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:08 Heat of formation + Delta-G solvation = -122.836183 kcal Electronic energy + Delta-G solvation = -21974.193602 eV Core-core repulsion = 18689.018772 eV Total energy + Delta-G solvation = -3285.174829 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64179 -40.17264 -38.72038 -36.64754 -35.01810 -34.55218 -32.93766 -31.22477 -29.34524 -27.24573 -26.61029 -25.43364 -24.31719 -23.77183 -21.17902 -19.42008 -19.04902 -18.47561 -17.81722 -17.59561 -17.11396 -16.67780 -16.52253 -16.10400 -15.81316 -15.38836 -15.16097 -14.79015 -14.58824 -14.19843 -14.03917 -13.82453 -13.64268 -13.45097 -13.13317 -12.80430 -12.74119 -12.48211 -12.28504 -12.04724 -11.94559 -11.76400 -11.67514 -11.57742 -10.86522 -10.76682 -10.55991 -9.48722 -9.25681 -8.28508 -6.32958 0.86838 1.37854 1.39432 1.50535 1.61390 2.31101 2.35315 2.53641 2.90459 3.06811 3.72957 3.81908 4.01408 4.09359 4.11859 4.27355 4.29876 4.38004 4.41027 4.54189 4.57316 4.59112 4.63848 4.74406 4.79766 4.85342 4.90446 4.94661 5.03423 5.19174 5.28949 5.30229 5.50020 5.71580 6.17234 6.28015 6.32862 6.62947 6.69932 7.21477 7.34164 8.87948 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.011588 B = 0.010090 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.664668 B = 2774.407492 C = 3991.254205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.060 3.940 4 C 0.111 3.889 5 N -0.583 5.583 6 C 0.228 3.772 7 C -0.531 4.531 8 H 0.027 0.973 9 C 0.023 3.977 10 N -0.942 5.942 11 Si 0.932 3.068 12 H -0.262 1.262 13 H -0.283 1.283 14 H -0.244 1.244 15 C 0.572 3.428 16 O -0.598 6.598 17 C -0.291 4.291 18 C 0.109 3.891 19 O -0.322 6.322 20 C 0.056 3.944 21 C -0.151 4.151 22 C -0.056 4.056 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.039 0.961 32 H 0.267 0.733 33 H 0.169 0.831 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.727 4.478 -8.270 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.330 6.330 3 C -0.018 4.018 4 C -0.012 4.012 5 N -0.312 5.312 6 C 0.106 3.894 7 C -0.570 4.570 8 H 0.046 0.954 9 C -0.175 4.175 10 N -0.582 5.582 11 Si 0.755 3.245 12 H -0.187 1.187 13 H -0.208 1.208 14 H -0.167 1.167 15 C 0.362 3.638 16 O -0.482 6.482 17 C -0.295 4.295 18 C 0.043 3.957 19 O -0.234 6.234 20 C -0.017 4.017 21 C -0.188 4.188 22 C -0.094 4.094 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.074 0.926 26 H 0.101 0.899 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.185 0.815 34 H 0.154 0.846 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.649 4.628 -8.279 14.260 hybrid contribution 0.245 -0.333 0.535 0.676 sum -10.405 4.294 -7.744 13.663 Atomic orbital electron populations 1.22909 0.79763 1.03533 1.00807 1.87970 1.21333 1.28151 1.95527 1.22891 0.92768 0.84885 1.01242 1.21527 0.93405 0.99391 0.86919 1.48023 1.63518 1.08423 1.11226 1.19527 0.95507 0.76592 0.97733 1.21479 1.00203 0.92812 1.42474 0.95439 1.25651 0.96691 1.00450 0.94739 1.70046 1.22198 1.17733 1.48261 0.85925 0.80838 0.78416 0.79287 1.18673 1.20835 1.16714 1.17136 0.75479 0.86069 0.85089 1.90690 1.55948 1.15177 1.86345 1.20002 0.98253 1.13271 0.98007 1.22350 0.98041 0.90053 0.85245 1.86169 1.39896 1.66319 1.31040 1.23757 0.79586 1.04120 0.94285 1.22147 1.01183 0.98854 0.96629 1.20033 0.90807 0.99935 0.98596 0.93571 0.89005 0.92585 0.89875 0.93568 0.90391 0.89187 0.93795 0.94272 0.92388 0.81452 0.84566 0.89490 0.92373 0.87137 0.90261 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.28 9.46 -148.98 -1.41 -14.69 16 3 C 0.06 1.81 6.28 71.98 0.45 2.26 16 4 C 0.11 4.18 5.87 86.38 0.51 4.69 16 5 N -0.58 -25.25 2.42 -836.59 -2.02 -27.28 16 6 C 0.23 10.72 4.00 85.63 0.34 11.06 16 7 C -0.53 -29.89 9.94 25.60 0.25 -29.64 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.74 16 9 C 0.02 1.31 5.47 84.65 0.46 1.77 16 10 N -0.94 -57.45 13.96 21.45 0.30 -57.15 16 11 Si 0.93 42.49 27.47 68.60 1.88 44.38 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.24 -10.40 6.54 99.48 0.65 -9.74 16 15 C 0.57 24.70 6.63 85.12 0.56 25.26 16 16 O -0.60 -27.89 16.64 -4.50 -0.07 -27.97 16 17 C -0.29 -11.14 4.03 -20.16 -0.08 -11.22 16 18 C 0.11 3.60 9.29 66.74 0.62 4.22 16 19 O -0.32 -9.42 10.48 -76.24 -0.80 -10.22 16 20 C 0.06 1.26 7.15 72.14 0.52 1.78 16 21 C -0.15 -4.23 6.23 30.82 0.19 -4.04 16 22 C -0.06 -2.00 5.89 29.82 0.18 -1.82 16 23 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 3.09 8.07 -2.39 -0.02 3.07 16 29 H 0.09 3.36 7.35 -2.39 -0.02 3.34 16 30 H 0.04 2.08 6.10 -2.38 -0.01 2.07 16 31 H 0.04 1.79 5.13 -2.39 -0.01 1.78 16 32 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.17 5.03 7.98 -2.91 -0.02 5.01 16 34 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.56 8.14 -2.39 -0.02 2.55 16 39 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -71.89 323.53 4.10 -67.79 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.97 Total: 18.97 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.25 Total: 6.16 kcal Atomic # 7 Polarization: -82.70 SS G_CDS: -1.73 Total: -84.43 kcal Atomic # 8 Polarization: -50.59 SS G_CDS: -2.28 Total: -52.87 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.88 Total: 44.38 kcal Total: -71.89 4.10 -67.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107781971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.047 kcal (2) G-P(sol) polarization free energy of solvation -71.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds