Wall clock time and date at job start Mon Mar 30 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 H 1.08996 * 109.30711 * 304.74288 * 3 2 1 5 5 N 1.46905 * 109.38636 * 64.48356 * 3 2 1 6 6 C 1.47185 * 110.17705 * 170.44979 * 5 3 2 7 7 C 1.53173 * 108.57136 * 290.83094 * 6 5 3 8 8 N 1.45999 * 109.94438 * 50.66379 * 7 6 5 9 9 C 1.46499 * 118.53475 * 161.66364 * 8 7 6 10 10 C 1.50707 * 109.47347 * 269.73403 * 9 8 7 11 11 O 1.21281 * 119.99523 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99914 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99778 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46871 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.33723 * 122.92870 * 341.38797 * 8 7 6 23 23 O 1.21282 * 118.62175 * 181.96314 * 22 8 7 24 24 H 1.08994 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46921 * 299.99847 * 1 2 3 26 26 H 1.08999 * 109.46535 * 60.00012 * 1 2 3 27 27 H 1.09001 * 109.46684 * 240.00013 * 2 1 3 28 28 H 1.09003 * 109.46885 * 120.00652 * 2 1 3 29 29 H 1.00898 * 110.99935 * 293.82133 * 5 3 2 30 30 H 1.09003 * 109.58996 * 50.77656 * 6 5 3 31 31 H 1.09001 * 109.59817 * 171.22395 * 6 5 3 32 32 H 1.09003 * 109.56248 * 290.42548 * 7 6 5 33 33 H 1.09006 * 109.27845 * 170.72272 * 7 6 5 34 34 H 1.09005 * 109.47136 * 149.73556 * 9 8 7 35 35 H 1.09002 * 109.47352 * 29.73524 * 9 8 7 36 36 H 0.97000 * 120.00556 * 0.02562 * 12 10 9 37 37 H 1.09005 * 109.46943 * 60.00092 * 13 12 10 38 38 H 1.09002 * 109.47064 * 300.00355 * 13 12 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6075 1.9776 -0.8453 5 7 1.6398 2.1011 1.2506 6 6 2.3086 3.4065 1.3734 7 6 3.8038 3.1687 1.6056 8 7 4.3233 2.2462 0.6003 9 6 5.7706 2.1950 0.3788 10 6 6.1504 3.1860 -0.6913 11 8 5.2962 3.8681 -1.2168 12 7 7.4392 3.3149 -1.0636 13 6 7.8083 4.2778 -2.1042 14 6 9.2972 4.2261 -2.3310 15 1 9.9075 3.5440 -1.7578 16 6 9.8804 5.0498 -3.2706 17 7 11.1797 5.0044 -3.4689 18 14 8.8249 6.2301 -4.2616 19 1 8.3616 5.5578 -5.5020 20 1 7.6494 6.6414 -3.4528 21 1 9.6248 7.4295 -4.6179 22 6 3.5375 1.4419 -0.1235 23 8 4.0553 0.6800 -0.9124 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 0.6372 2.2023 1.3012 30 1 2.1633 3.9792 0.4574 31 1 1.8909 3.9532 2.2189 32 1 3.9562 2.7452 2.5983 33 1 4.3346 4.1181 1.5339 34 1 6.0544 1.1915 0.0618 35 1 6.2889 2.4438 1.3048 36 1 8.1224 2.7696 -0.6431 37 1 7.5239 5.2814 -1.7879 38 1 7.2904 4.0283 -3.0303 39 1 11.5899 5.5836 -4.1301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110687707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:45 Heat of formation + Delta-G solvation = -67.024838 kcal Electronic energy + Delta-G solvation = -20963.819165 eV Core-core repulsion = 17713.357249 eV Total energy + Delta-G solvation = -3250.461917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.76239 -38.71923 -36.91293 -35.68971 -34.25845 -32.67856 -32.34370 -29.44279 -28.93433 -27.37523 -25.59357 -23.31383 -22.21660 -21.54572 -19.98924 -18.67956 -17.49429 -17.31251 -17.09122 -16.20390 -15.66073 -15.41324 -15.11411 -14.62182 -14.58634 -14.05667 -13.97819 -13.74397 -13.52871 -12.81628 -12.75013 -12.52854 -12.34800 -12.24139 -11.99886 -11.84348 -11.55218 -11.21969 -11.04873 -11.00631 -10.76889 -9.98730 -9.79788 -9.64685 -9.48232 -8.94114 -8.78421 -8.55977 -8.16742 -6.21880 -4.23992 2.59440 2.84966 3.18975 3.26741 3.32815 3.40669 3.72551 4.06778 4.31241 4.33006 4.53508 4.70179 4.85907 4.97553 5.08478 5.13253 5.16519 5.24946 5.27946 5.37102 5.44577 5.47881 5.54340 5.67119 5.78368 5.89046 6.07359 6.20471 6.45886 6.79870 6.87263 7.06260 7.20668 7.37821 7.38631 8.09259 8.17705 8.50199 8.74353 8.90600 9.38228 10.90112 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.003870 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.504008 B = 7232.856729 C = 7277.316385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.075 3.925 4 H 0.074 0.926 5 N -0.677 5.677 6 C 0.038 3.962 7 C 0.121 3.879 8 N -0.582 5.582 9 C 0.088 3.912 10 C 0.486 3.514 11 O -0.554 6.554 12 N -0.703 5.703 13 C 0.222 3.778 14 C -0.543 4.543 15 H 0.080 0.920 16 C 0.078 3.922 17 N -0.892 5.892 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.262 1.262 21 H -0.283 1.283 22 C 0.530 3.470 23 O -0.543 6.543 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.349 0.651 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.397 0.603 37 H 0.024 0.976 38 H 0.019 0.981 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.792 -6.073 12.937 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.038 4.038 4 H 0.091 0.909 5 N -0.311 5.311 6 C -0.092 4.092 7 C -0.002 4.002 8 N -0.314 5.314 9 C -0.038 4.038 10 C 0.270 3.730 11 O -0.433 6.433 12 N -0.352 5.352 13 C 0.100 3.900 14 C -0.581 4.581 15 H 0.098 0.902 16 C -0.126 4.126 17 N -0.529 5.529 18 Si 0.704 3.296 19 H -0.198 1.198 20 H -0.186 1.186 21 H -0.209 1.209 22 C 0.317 3.683 23 O -0.419 6.419 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.169 0.831 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.231 0.769 37 H 0.042 0.958 38 H 0.037 0.963 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.506 -6.221 12.411 23.942 hybrid contribution -0.445 1.127 -1.054 1.606 sum -19.952 -5.094 11.357 23.516 Atomic orbital electron populations 1.21780 0.95278 1.02217 1.01630 1.21423 0.95822 0.93286 1.03821 1.21613 0.91830 0.97937 0.92378 0.90873 1.60908 1.13194 1.21540 1.35483 1.22350 0.94059 0.90526 1.02261 1.21556 0.93827 0.93590 0.91215 1.46921 1.06040 1.39753 1.38664 1.21406 0.81782 1.01561 0.99100 1.20947 0.83420 0.84268 0.84358 1.90628 1.49481 1.46731 1.56434 1.46149 1.07048 1.41537 1.40495 1.19480 0.96379 0.87987 0.86191 1.21095 0.89956 1.24033 1.23027 0.90169 1.24797 0.94943 0.96589 0.96290 1.69882 1.09710 1.39121 1.34227 0.86812 0.80847 0.80885 0.81096 1.19838 1.18638 1.20864 1.19925 0.88983 0.79649 0.79712 1.90719 1.74466 1.40211 1.36539 0.92136 0.92371 0.92835 0.90049 0.90773 0.83121 0.93323 0.88578 0.90801 0.90127 0.86813 0.87681 0.76912 0.95793 0.96263 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.67 37.16 0.36 -0.73 16 2 C -0.11 -1.06 5.42 -26.73 -0.14 -1.20 16 3 C 0.08 0.87 2.70 -69.08 -0.19 0.68 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 5 N -0.68 -5.97 6.44 -107.87 -0.69 -6.66 16 6 C 0.04 0.33 6.64 -3.58 -0.02 0.31 16 7 C 0.12 1.28 6.58 -4.22 -0.03 1.25 16 8 N -0.58 -8.26 2.32 -175.84 -0.41 -8.66 16 9 C 0.09 1.29 5.77 -5.19 -0.03 1.26 16 10 C 0.49 9.55 7.89 -10.98 -0.09 9.46 16 11 O -0.55 -12.91 16.43 5.56 0.09 -12.82 16 12 N -0.70 -14.55 5.55 -61.47 -0.34 -14.89 16 13 C 0.22 5.58 4.50 -5.19 -0.02 5.56 16 14 C -0.54 -15.10 9.83 -34.44 -0.34 -15.44 16 15 H 0.08 2.31 7.84 -52.49 -0.41 1.89 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 17 N -0.89 -26.72 13.96 55.43 0.77 -25.95 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.53 8.26 7.11 -11.67 -0.08 8.17 16 23 O -0.54 -10.38 15.45 5.56 0.09 -10.29 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.35 6.90 -51.93 -0.36 -0.01 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.94 7.65 -51.93 -0.40 0.54 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.35 2.27 7.45 -39.29 -0.29 1.98 16 30 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.11 1.67 7.21 -51.93 -0.37 1.30 16 35 H 0.11 1.13 8.03 -51.93 -0.42 0.72 16 36 H 0.40 7.14 8.32 -40.82 -0.34 6.80 16 37 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 38 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 321.48 15.07 4.84 4.84 Total: -1.00 -35.47 321.48 -6.90 -42.37 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -5.90 Total: 3.52 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -0.68 Total: 11.44 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.67 Total: -56.16 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: 0.18 Total: -23.11 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.47 -6.90 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110687707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.656 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds