Wall clock time and date at job start Mon Mar 30 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47170 * 2 1 4 4 H 1.08996 * 109.30711 * 304.74288 * 3 2 1 5 5 N 1.46905 * 109.38636 * 64.48356 * 3 2 1 6 6 C 1.47185 * 110.17705 * 170.44979 * 5 3 2 7 7 C 1.53173 * 108.57136 * 290.83094 * 6 5 3 8 8 N 1.45999 * 109.94438 * 50.66379 * 7 6 5 9 9 C 1.46499 * 118.53475 * 161.66364 * 8 7 6 10 10 C 1.50707 * 109.47347 * 269.73403 * 9 8 7 11 11 O 1.21281 * 119.99523 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99914 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99778 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.46871 * 179.97438 * 13 12 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99717 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.33723 * 122.92870 * 341.38797 * 8 7 6 23 23 O 1.21282 * 118.62175 * 181.96314 * 22 8 7 24 24 H 1.08994 * 109.46885 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46921 * 299.99847 * 1 2 3 26 26 H 1.08999 * 109.46535 * 60.00012 * 1 2 3 27 27 H 1.09001 * 109.46684 * 240.00013 * 2 1 3 28 28 H 1.09003 * 109.46885 * 120.00652 * 2 1 3 29 29 H 1.00898 * 110.99935 * 293.82133 * 5 3 2 30 30 H 1.09003 * 109.58996 * 50.77656 * 6 5 3 31 31 H 1.09001 * 109.59817 * 171.22395 * 6 5 3 32 32 H 1.09003 * 109.56248 * 290.42548 * 7 6 5 33 33 H 1.09006 * 109.27845 * 170.72272 * 7 6 5 34 34 H 1.09005 * 109.47136 * 149.73556 * 9 8 7 35 35 H 1.09002 * 109.47352 * 29.73524 * 9 8 7 36 36 H 0.97000 * 120.00556 * 0.02562 * 12 10 9 37 37 H 1.09005 * 109.46943 * 60.00092 * 13 12 10 38 38 H 1.09002 * 109.47064 * 300.00355 * 13 12 10 39 39 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6075 1.9776 -0.8453 5 7 1.6398 2.1011 1.2506 6 6 2.3086 3.4065 1.3734 7 6 3.8038 3.1687 1.6056 8 7 4.3233 2.2462 0.6003 9 6 5.7706 2.1950 0.3788 10 6 6.1504 3.1860 -0.6913 11 8 5.2962 3.8681 -1.2168 12 7 7.4392 3.3149 -1.0636 13 6 7.8083 4.2778 -2.1042 14 6 9.2972 4.2261 -2.3310 15 1 9.9075 3.5440 -1.7578 16 6 9.8804 5.0498 -3.2706 17 7 11.1797 5.0044 -3.4689 18 14 8.8249 6.2301 -4.2616 19 1 8.3616 5.5578 -5.5020 20 1 7.6494 6.6414 -3.4528 21 1 9.6248 7.4295 -4.6179 22 6 3.5375 1.4419 -0.1235 23 8 4.0553 0.6800 -0.9124 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8900 29 1 0.6372 2.2023 1.3012 30 1 2.1633 3.9792 0.4574 31 1 1.8909 3.9532 2.2189 32 1 3.9562 2.7452 2.5983 33 1 4.3346 4.1181 1.5339 34 1 6.0544 1.1915 0.0618 35 1 6.2889 2.4438 1.3048 36 1 8.1224 2.7696 -0.6431 37 1 7.5239 5.2814 -1.7879 38 1 7.2904 4.0283 -3.0303 39 1 11.5899 5.5836 -4.1301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110687707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:44 Heat of formation + Delta-G solvation = -95.930675 kcal Electronic energy + Delta-G solvation = -20965.072617 eV Core-core repulsion = 17713.357249 eV Total energy + Delta-G solvation = -3251.715368 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89770 -40.28295 -37.92786 -36.77171 -36.10108 -34.46242 -33.49914 -30.86784 -29.94682 -28.90048 -26.59189 -24.47457 -23.80249 -22.54435 -21.61115 -19.70080 -19.30873 -18.29444 -18.14906 -17.97211 -17.10218 -16.48234 -16.43232 -16.06708 -15.93454 -15.56914 -15.07412 -14.80026 -14.63549 -14.44347 -14.38277 -14.08408 -13.38357 -13.18995 -13.11078 -12.93849 -12.75761 -12.73015 -12.60312 -11.97209 -11.96617 -11.73355 -11.70166 -11.18002 -10.95830 -10.95300 -10.00453 -9.83402 -9.66960 -8.43396 -6.50519 1.28946 1.30902 1.40267 1.43329 1.62781 1.79462 2.24462 2.53693 2.91613 2.98142 3.39062 3.72795 3.88903 3.92434 4.01036 4.17734 4.25591 4.33887 4.40184 4.53269 4.54416 4.70555 4.75290 4.81804 4.93253 4.96748 5.14735 5.17302 5.19558 5.22864 5.40426 5.45062 5.64915 6.04743 6.26409 6.32936 6.50080 6.75197 7.01008 7.11461 7.32532 8.71395 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034411 B = 0.003870 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.504008 B = 7232.856729 C = 7277.316385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C 0.080 3.920 4 H 0.068 0.932 5 N -0.666 5.666 6 C 0.039 3.961 7 C 0.111 3.889 8 N -0.584 5.584 9 C 0.096 3.904 10 C 0.485 3.515 11 O -0.592 6.592 12 N -0.703 5.703 13 C 0.234 3.766 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.027 3.973 17 N -0.929 5.929 18 Si 0.937 3.063 19 H -0.269 1.269 20 H -0.261 1.261 21 H -0.269 1.269 22 C 0.515 3.485 23 O -0.590 6.590 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.366 0.634 30 H 0.029 0.971 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.113 0.887 35 H 0.152 0.848 36 H 0.411 0.589 37 H 0.016 0.984 38 H 0.002 0.998 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.787 -5.650 14.684 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.139 4.139 3 C -0.033 4.033 4 H 0.085 0.915 5 N -0.302 5.302 6 C -0.090 4.090 7 C -0.010 4.010 8 N -0.315 5.315 9 C -0.031 4.031 10 C 0.271 3.729 11 O -0.474 6.474 12 N -0.353 5.353 13 C 0.111 3.889 14 C -0.585 4.585 15 H 0.079 0.921 16 C -0.173 4.173 17 N -0.568 5.568 18 Si 0.761 3.239 19 H -0.194 1.194 20 H -0.185 1.185 21 H -0.194 1.194 22 C 0.304 3.696 23 O -0.470 6.470 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.188 0.812 30 H 0.047 0.953 31 H 0.152 0.848 32 H 0.120 0.880 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.169 0.831 36 H 0.246 0.754 37 H 0.034 0.966 38 H 0.020 0.980 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.519 -5.797 14.213 26.433 hybrid contribution 0.209 0.968 -1.543 1.833 sum -21.310 -4.830 12.671 25.258 Atomic orbital electron populations 1.21744 0.92779 1.03118 1.02548 1.21370 0.97860 0.92053 1.02592 1.21537 0.89131 0.99108 0.93504 0.91476 1.60883 1.14468 1.21408 1.33420 1.22426 0.93269 0.90417 1.02896 1.21901 0.94818 0.92927 0.91392 1.47190 1.05743 1.39756 1.38781 1.21440 0.82937 0.99621 0.99078 1.21859 0.82212 0.84234 0.84581 1.90605 1.50338 1.48486 1.57936 1.46005 1.08284 1.41162 1.39866 1.19066 0.94378 0.88681 0.86824 1.21285 0.91147 1.23445 1.22654 0.92060 1.25595 0.96034 0.98302 0.97415 1.69977 1.11249 1.40343 1.35244 0.85862 0.79273 0.79208 0.79547 1.19435 1.18541 1.19369 1.20740 0.90758 0.79118 0.78999 1.90685 1.75609 1.42220 1.38510 0.91302 0.90594 0.92711 0.92380 0.90955 0.81184 0.95286 0.84836 0.87956 0.90371 0.86884 0.83095 0.75353 0.96625 0.97977 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.67 71.99 0.70 -1.08 16 2 C -0.10 -1.93 5.42 30.59 0.17 -1.77 16 3 C 0.08 1.77 2.70 44.02 0.12 1.89 16 4 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 5 N -0.67 -9.91 6.44 -495.20 -3.19 -13.10 16 6 C 0.04 0.58 6.64 86.31 0.57 1.16 16 7 C 0.11 2.04 6.58 86.53 0.57 2.61 16 8 N -0.58 -15.74 2.32 -829.21 -1.92 -17.66 16 9 C 0.10 2.65 5.77 85.64 0.49 3.15 16 10 C 0.48 18.81 7.89 87.66 0.69 19.51 16 11 O -0.59 -27.68 16.43 -3.03 -0.05 -27.73 16 12 N -0.70 -28.97 5.55 -466.77 -2.59 -31.56 16 13 C 0.23 11.86 4.50 85.63 0.38 12.24 16 14 C -0.55 -30.79 9.83 25.60 0.25 -30.54 16 15 H 0.06 3.60 7.84 -2.91 -0.02 3.57 16 16 C 0.03 1.55 5.47 84.66 0.46 2.02 16 17 N -0.93 -56.09 13.96 21.45 0.30 -55.79 16 18 Si 0.94 44.92 27.47 68.60 1.88 46.80 16 19 H -0.27 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.26 -12.38 6.54 99.48 0.65 -11.73 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 C 0.51 15.88 7.11 87.68 0.62 16.50 16 23 O -0.59 -23.08 15.45 -3.03 -0.05 -23.13 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.08 0.67 6.90 -2.39 -0.02 0.65 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 1.38 7.65 -2.39 -0.02 1.36 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.37 3.50 7.45 -89.70 -0.67 2.83 16 30 H 0.03 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.50 8.13 -2.38 -0.02 1.48 16 34 H 0.11 3.23 7.21 -2.38 -0.02 3.22 16 35 H 0.15 2.77 8.03 -2.39 -0.02 2.75 16 36 H 0.41 14.60 8.32 -92.71 -0.77 13.83 16 37 H 0.02 0.83 7.20 -2.38 -0.02 0.81 16 38 H 0.00 0.12 7.57 -2.39 -0.02 0.11 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.33 321.48 -1.01 -79.34 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.43 Total: 17.15 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 5.03 Total: 25.68 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -7.40 Total: -118.12 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.10 Total: -50.86 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -78.33 -1.01 -79.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110687707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.591 kcal (2) G-P(sol) polarization free energy of solvation -78.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds