Wall clock time and date at job start Mon Mar 30 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.08998 * 109.38809 * 54.79063 * 3 2 1 5 5 N 1.46910 * 109.38741 * 295.00260 * 3 2 1 6 6 C 1.47190 * 110.17297 * 189.54964 * 5 3 2 7 7 C 1.52976 * 108.73372 * 68.99818 * 6 5 3 8 8 N 1.46014 * 110.04026 * 309.70798 * 7 6 5 9 9 C 1.46507 * 118.53327 * 198.14004 * 8 7 6 10 10 C 1.50700 * 109.46956 * 90.00179 * 9 8 7 11 11 O 1.21287 * 120.00118 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00000 * 179.97438 * 10 9 8 13 13 C 1.46491 * 120.00091 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46957 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.33714 * 122.93016 * 18.41475 * 8 7 6 23 23 O 1.21276 * 118.62578 * 178.05328 * 22 8 7 24 24 H 1.09009 * 109.47455 * 59.99777 * 1 2 3 25 25 H 1.09004 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47373 * 300.00137 * 1 2 3 27 27 H 1.09005 * 109.46893 * 240.00378 * 2 1 3 28 28 H 1.08996 * 109.47335 * 120.00367 * 2 1 3 29 29 H 1.00897 * 110.99974 * 66.18046 * 5 3 2 30 30 H 1.09003 * 109.59141 * 309.21734 * 6 5 3 31 31 H 1.08998 * 109.58939 * 188.77550 * 6 5 3 32 32 H 1.08995 * 109.37773 * 189.53423 * 7 6 5 33 33 H 1.08996 * 109.28145 * 69.81911 * 7 6 5 34 34 H 1.08998 * 109.47039 * 330.00140 * 9 8 7 35 35 H 1.09002 * 109.46505 * 209.99639 * 9 8 7 36 36 H 0.97003 * 119.99349 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.47166 * 60.00164 * 13 12 10 38 38 H 1.08994 * 109.47507 * 299.99870 * 13 12 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9812 0.8401 5 7 1.6503 2.0975 -1.2559 6 6 2.3201 3.4026 -1.3769 7 6 3.8166 3.1687 -1.5912 8 7 4.3282 2.2448 -0.5829 9 6 5.7736 2.1944 -0.3490 10 6 6.1442 3.1884 0.7213 11 8 5.2856 3.8720 1.2376 12 7 7.4297 3.3177 1.1049 13 6 7.7901 4.2844 2.1449 14 6 9.2767 4.2315 2.3865 15 1 9.8916 3.5467 1.8215 16 6 9.8527 5.0620 3.3245 17 7 9.1039 5.8962 4.0123 18 14 11.6964 5.0018 3.6184 19 1 12.4096 5.3342 2.3590 20 1 12.0624 5.9852 4.6694 21 1 12.0830 3.6381 4.0611 22 6 3.5368 1.4389 0.1327 23 8 4.0481 0.6762 0.9250 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6481 2.1985 -1.3153 30 1 2.1671 3.9780 -0.4638 31 1 1.9096 3.9466 -2.2274 32 1 4.3459 4.1183 -1.5132 33 1 3.9764 2.7461 -2.5831 34 1 6.2997 2.4405 -1.2713 35 1 6.0546 1.1917 -0.0267 36 1 8.1163 2.7707 0.6922 37 1 7.2635 4.0390 3.0673 38 1 7.5096 5.2869 1.8222 39 1 9.5091 6.4802 4.6724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110687710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:47 Heat of formation + Delta-G solvation = -70.818280 kcal Electronic energy + Delta-G solvation = -20895.553194 eV Core-core repulsion = 17644.926781 eV Total energy + Delta-G solvation = -3250.626413 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68946 -38.56013 -36.85252 -35.61165 -34.13156 -32.62306 -32.30019 -29.29734 -28.73514 -26.94564 -25.49321 -23.29194 -22.48616 -21.58857 -19.79484 -18.61582 -17.37643 -17.22300 -17.02516 -15.86159 -15.58067 -15.34790 -14.98406 -14.73402 -14.42371 -13.98980 -13.94997 -13.67796 -13.51147 -12.67846 -12.59812 -12.42113 -12.10731 -11.94638 -11.92496 -11.77886 -11.38482 -11.16480 -11.00688 -10.96452 -10.85243 -10.31954 -9.73351 -9.48611 -9.40945 -8.88166 -8.72918 -8.45208 -7.88580 -6.16088 -4.23122 2.66169 2.92840 3.25930 3.30610 3.32279 3.34874 3.78120 4.16238 4.37040 4.40088 4.59728 4.75979 4.91045 5.03404 5.13886 5.19831 5.22970 5.30368 5.34396 5.48742 5.50855 5.53660 5.61616 5.73006 5.82323 5.93623 6.11955 6.27469 6.51814 6.92623 7.30130 7.43123 7.45269 7.52109 7.66485 7.97250 8.21805 8.61923 8.77775 9.08822 9.43317 10.94146 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040294 B = 0.003582 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.723394 B = 7815.671080 C = 7995.516484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 C 0.075 3.925 4 H 0.074 0.926 5 N -0.677 5.677 6 C 0.037 3.963 7 C 0.122 3.878 8 N -0.582 5.582 9 C 0.088 3.912 10 C 0.484 3.516 11 O -0.551 6.551 12 N -0.710 5.710 13 C 0.252 3.748 14 C -0.544 4.544 15 H 0.063 0.937 16 C 0.063 3.937 17 N -0.886 5.886 18 Si 0.905 3.095 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.530 3.470 23 O -0.544 6.544 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.349 0.651 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.391 0.609 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.619 -8.020 -13.978 21.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.038 4.038 4 H 0.092 0.908 5 N -0.311 5.311 6 C -0.092 4.092 7 C -0.002 4.002 8 N -0.313 5.313 9 C -0.039 4.039 10 C 0.268 3.732 11 O -0.430 6.430 12 N -0.359 5.359 13 C 0.131 3.869 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.140 4.140 17 N -0.524 5.524 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.200 1.200 22 C 0.317 3.683 23 O -0.420 6.420 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.168 0.832 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.224 0.776 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.495 -8.093 -13.404 21.336 hybrid contribution 0.892 0.560 0.691 1.259 sum -13.603 -7.533 -12.713 20.085 Atomic orbital electron populations 1.21781 0.95309 1.02172 1.01638 1.21423 0.95797 0.93341 1.03793 1.21625 0.91924 0.97908 0.92320 0.90803 1.60910 1.13418 1.21725 1.35077 1.22313 0.94057 0.90522 1.02332 1.21510 0.93927 0.93631 0.91101 1.46911 1.06178 1.39537 1.38691 1.21427 0.81776 1.01592 0.99127 1.20881 0.83643 0.84367 0.84346 1.90639 1.48990 1.46647 1.56758 1.46428 1.06932 1.41572 1.41005 1.19082 0.95300 0.87177 0.85366 1.21198 0.91998 1.22518 1.22485 0.91882 1.24962 0.98839 0.94882 0.95362 1.69970 1.35763 1.22654 1.23983 0.86458 0.84346 0.78000 0.78001 1.20053 1.21076 1.20017 1.19916 0.88921 0.79690 0.79749 1.90713 1.74758 1.40290 1.36251 0.92406 0.92175 0.92805 0.90811 0.90039 0.83157 0.93292 0.88592 0.90055 0.90942 0.87931 0.87015 0.77645 0.95646 0.95629 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.68 37.15 0.36 -0.79 16 2 C -0.11 -1.10 5.41 -26.73 -0.14 -1.25 16 3 C 0.07 0.91 2.70 -69.07 -0.19 0.72 16 4 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 5 N -0.68 -6.31 6.45 -107.96 -0.70 -7.01 16 6 C 0.04 0.35 6.63 -3.68 -0.02 0.33 16 7 C 0.12 1.36 6.57 -4.32 -0.03 1.33 16 8 N -0.58 -8.65 2.32 -175.95 -0.41 -9.06 16 9 C 0.09 1.34 5.77 -5.19 -0.03 1.31 16 10 C 0.48 10.02 7.89 -10.98 -0.09 9.93 16 11 O -0.55 -13.66 16.43 5.55 0.09 -13.57 16 12 N -0.71 -15.34 5.55 -61.48 -0.34 -15.68 16 13 C 0.25 6.82 5.43 -5.20 -0.03 6.80 16 14 C -0.54 -14.98 9.28 -34.44 -0.32 -15.30 16 15 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 C 0.53 8.60 7.12 -11.67 -0.08 8.51 16 23 O -0.54 -10.72 15.43 5.56 0.09 -10.64 16 24 H 0.06 0.37 6.92 -51.92 -0.36 0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 29 H 0.35 2.43 7.47 -39.29 -0.29 2.14 16 30 H 0.05 0.55 8.08 -51.93 -0.42 0.13 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 1.17 8.03 -51.93 -0.42 0.75 16 35 H 0.11 1.71 7.20 -51.93 -0.37 1.34 16 36 H 0.39 7.15 8.32 -40.82 -0.34 6.81 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -35.56 325.07 -7.26 -42.82 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.94 Total: 4.66 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -0.67 Total: 13.27 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -0.71 Total: -57.49 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.18 Total: -24.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.56 -7.26 -42.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110687710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.002 kcal (2) G-P(sol) polarization free energy of solvation -35.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds