Wall clock time and date at job start Mon Mar 30 2020 05:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.08998 * 109.38809 * 54.79063 * 3 2 1 5 5 N 1.46910 * 109.38741 * 295.00260 * 3 2 1 6 6 C 1.47190 * 110.17297 * 189.54964 * 5 3 2 7 7 C 1.52976 * 108.73372 * 68.99818 * 6 5 3 8 8 N 1.46014 * 110.04026 * 309.70798 * 7 6 5 9 9 C 1.46507 * 118.53327 * 198.14004 * 8 7 6 10 10 C 1.50700 * 109.46956 * 90.00179 * 9 8 7 11 11 O 1.21287 * 120.00118 * 359.97438 * 10 9 8 12 12 N 1.34780 * 120.00000 * 179.97438 * 10 9 8 13 13 C 1.46491 * 120.00091 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.46957 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.33714 * 122.93016 * 18.41475 * 8 7 6 23 23 O 1.21276 * 118.62578 * 178.05328 * 22 8 7 24 24 H 1.09009 * 109.47455 * 59.99777 * 1 2 3 25 25 H 1.09004 * 109.47549 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47373 * 300.00137 * 1 2 3 27 27 H 1.09005 * 109.46893 * 240.00378 * 2 1 3 28 28 H 1.08996 * 109.47335 * 120.00367 * 2 1 3 29 29 H 1.00897 * 110.99974 * 66.18046 * 5 3 2 30 30 H 1.09003 * 109.59141 * 309.21734 * 6 5 3 31 31 H 1.08998 * 109.58939 * 188.77550 * 6 5 3 32 32 H 1.08995 * 109.37773 * 189.53423 * 7 6 5 33 33 H 1.08996 * 109.28145 * 69.81911 * 7 6 5 34 34 H 1.08998 * 109.47039 * 330.00140 * 9 8 7 35 35 H 1.09002 * 109.46505 * 209.99639 * 9 8 7 36 36 H 0.97003 * 119.99349 * 359.97438 * 12 10 9 37 37 H 1.09004 * 109.47166 * 60.00164 * 13 12 10 38 38 H 1.08994 * 109.47507 * 299.99870 * 13 12 10 39 39 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9812 0.8401 5 7 1.6503 2.0975 -1.2559 6 6 2.3201 3.4026 -1.3769 7 6 3.8166 3.1687 -1.5912 8 7 4.3282 2.2448 -0.5829 9 6 5.7736 2.1944 -0.3490 10 6 6.1442 3.1884 0.7213 11 8 5.2856 3.8720 1.2376 12 7 7.4297 3.3177 1.1049 13 6 7.7901 4.2844 2.1449 14 6 9.2767 4.2315 2.3865 15 1 9.8916 3.5467 1.8215 16 6 9.8527 5.0620 3.3245 17 7 9.1039 5.8962 4.0123 18 14 11.6964 5.0018 3.6184 19 1 12.4096 5.3342 2.3590 20 1 12.0624 5.9852 4.6694 21 1 12.0830 3.6381 4.0611 22 6 3.5368 1.4389 0.1327 23 8 4.0481 0.6762 0.9250 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.6481 2.1985 -1.3153 30 1 2.1671 3.9780 -0.4638 31 1 1.9096 3.9466 -2.2274 32 1 4.3459 4.1183 -1.5132 33 1 3.9764 2.7461 -2.5831 34 1 6.2997 2.4405 -1.2713 35 1 6.0546 1.1917 -0.0267 36 1 8.1163 2.7707 0.6922 37 1 7.2635 4.0390 3.0673 38 1 7.5096 5.2869 1.8222 39 1 9.5091 6.4802 4.6724 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110687710.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:47 Heat of formation + Delta-G solvation = -99.880394 kcal Electronic energy + Delta-G solvation = -20896.813421 eV Core-core repulsion = 17644.926781 eV Total energy + Delta-G solvation = -3251.886640 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.89160 -40.23657 -37.93268 -36.75634 -36.08722 -34.40614 -33.49345 -30.56568 -29.91384 -28.64094 -26.60047 -24.76567 -23.96228 -22.55365 -21.52549 -19.70368 -19.13790 -18.28636 -18.15232 -17.72193 -17.10970 -16.51176 -16.41215 -16.05074 -15.95958 -15.49873 -15.09003 -14.70293 -14.61824 -14.22394 -14.19722 -13.97276 -13.37055 -13.18039 -12.97661 -12.90976 -12.75047 -12.69564 -12.60818 -12.26233 -11.96935 -11.73247 -11.54932 -11.13005 -10.95334 -10.82199 -9.89824 -9.82828 -9.67460 -8.31797 -6.49107 1.39101 1.42371 1.46103 1.54326 1.67013 1.81296 2.32733 2.63580 2.97472 3.02877 3.38712 3.73203 3.91086 3.94451 4.01178 4.17919 4.24999 4.33516 4.39838 4.53097 4.54468 4.73732 4.81334 4.92604 5.03700 5.14709 5.18058 5.18933 5.20496 5.40408 5.43886 5.62797 5.65661 5.80702 6.26254 6.32852 6.61209 6.81264 7.01757 7.19859 7.41520 8.80353 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040294 B = 0.003582 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.723394 B = 7815.671080 C = 7995.516484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.100 4.100 3 C 0.080 3.920 4 H 0.066 0.934 5 N -0.664 5.664 6 C 0.039 3.961 7 C 0.112 3.888 8 N -0.585 5.585 9 C 0.098 3.902 10 C 0.480 3.520 11 O -0.598 6.598 12 N -0.705 5.705 13 C 0.269 3.731 14 C -0.558 4.558 15 H 0.086 0.914 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.285 1.285 21 H -0.264 1.264 22 C 0.514 3.486 23 O -0.590 6.590 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.367 0.633 30 H 0.026 0.974 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.410 0.590 37 H -0.022 1.022 38 H -0.009 1.009 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.260 -8.803 -16.503 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.033 4.033 4 H 0.084 0.916 5 N -0.300 5.300 6 C -0.091 4.091 7 C -0.010 4.010 8 N -0.315 5.315 9 C -0.029 4.029 10 C 0.266 3.734 11 O -0.480 6.480 12 N -0.355 5.355 13 C 0.146 3.854 14 C -0.596 4.596 15 H 0.104 0.896 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.810 3.190 19 H -0.183 1.183 20 H -0.210 1.210 21 H -0.188 1.188 22 C 0.303 3.697 23 O -0.471 6.471 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.188 0.812 30 H 0.044 0.956 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.170 0.830 35 H 0.132 0.868 36 H 0.246 0.754 37 H -0.004 1.004 38 H 0.008 0.992 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.157 -8.892 -16.001 23.142 hybrid contribution 0.713 0.837 1.464 1.831 sum -13.445 -8.055 -14.538 21.377 Atomic orbital electron populations 1.21747 0.92770 1.03152 1.02524 1.21369 0.97866 0.91938 1.02644 1.21556 0.89160 0.99209 0.93417 0.91635 1.60889 1.14717 1.21463 1.32916 1.22391 0.93302 0.90464 1.02903 1.21856 0.94900 0.92868 0.91397 1.47192 1.05916 1.39545 1.38843 1.21448 0.82988 0.99495 0.98932 1.21955 0.82471 0.84338 0.84618 1.90613 1.50133 1.48704 1.58521 1.46168 1.08283 1.40988 1.40083 1.18506 0.95330 0.86678 0.84856 1.21602 0.92044 1.23020 1.22918 0.89636 1.26113 1.04721 0.94096 0.94766 1.70141 1.38456 1.23688 1.24781 0.85171 0.77106 0.78354 0.78370 1.18277 1.21044 1.18825 1.20752 0.90742 0.79168 0.79015 1.90677 1.75903 1.42308 1.38167 0.90580 0.91198 0.92806 0.90796 0.92394 0.81169 0.95582 0.84703 0.90602 0.87751 0.82995 0.86776 0.75396 1.00367 0.99155 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.68 71.98 0.70 -1.22 16 2 C -0.10 -2.03 5.41 30.59 0.17 -1.87 16 3 C 0.08 1.88 2.70 44.03 0.12 2.00 16 4 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 5 N -0.66 -10.82 6.45 -495.48 -3.20 -14.01 16 6 C 0.04 0.65 6.63 86.24 0.57 1.22 16 7 C 0.11 2.25 6.57 86.46 0.57 2.82 16 8 N -0.58 -16.85 2.32 -829.57 -1.92 -18.77 16 9 C 0.10 2.88 5.77 85.63 0.49 3.37 16 10 C 0.48 20.20 7.89 87.66 0.69 20.89 16 11 O -0.60 -30.93 16.43 -3.05 -0.05 -30.98 16 12 N -0.70 -30.93 5.55 -466.80 -2.59 -33.52 16 13 C 0.27 15.27 5.43 85.64 0.46 15.74 16 14 C -0.56 -31.01 9.28 25.60 0.24 -30.77 16 15 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 16 C 0.00 0.15 5.46 84.66 0.46 0.61 16 17 N -0.93 -57.27 13.29 21.45 0.28 -56.99 16 18 Si 0.99 42.85 29.54 68.60 2.03 44.88 16 19 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 22 C 0.51 16.78 7.12 87.69 0.62 17.41 16 23 O -0.59 -24.08 15.43 -3.02 -0.05 -24.13 16 24 H 0.08 0.74 6.92 -2.38 -0.02 0.72 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.06 1.44 7.63 -2.39 -0.02 1.43 16 29 H 0.37 3.97 7.47 -89.70 -0.67 3.30 16 30 H 0.03 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.63 8.12 -2.39 -0.02 1.61 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.15 2.96 8.03 -2.39 -0.02 2.94 16 35 H 0.11 3.40 7.20 -2.39 -0.02 3.38 16 36 H 0.41 14.66 8.32 -92.71 -0.77 13.89 16 37 H -0.02 -1.41 8.14 -2.38 -0.02 -1.43 16 38 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 39 H 0.27 15.43 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -82.12 325.07 -0.77 -82.89 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -0.38 Total: 20.42 kcal Atomic # 6 Polarization: 25.10 SS G_CDS: 5.10 Total: 30.20 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -7.42 Total: -123.29 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -0.10 Total: -55.10 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -82.12 -0.77 -82.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110687710.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.990 kcal (2) G-P(sol) polarization free energy of solvation -82.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds