Wall clock time and date at job start Mon Mar 30 2020 05:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47403 * 2 1 4 4 H 1.08998 * 109.49109 * 61.42956 * 3 2 1 5 5 C 1.52781 * 109.58646 * 301.51360 * 3 2 1 6 6 N 1.47083 * 108.76700 * 186.35711 * 5 3 2 7 7 C 1.34775 * 120.87722 * 231.12327 * 6 5 3 8 8 O 1.21442 * 120.00399 * 5.73754 * 7 6 5 9 9 C 1.48834 * 119.99879 * 185.73621 * 7 6 5 10 10 O 1.21510 * 119.99866 * 6.43924 * 9 7 6 11 11 N 1.34773 * 120.00576 * 186.44266 * 9 7 6 12 12 C 1.36115 * 120.00616 * 180.02562 * 11 9 7 13 13 H 1.08003 * 119.99624 * 359.97438 * 12 11 9 14 14 C 1.39585 * 120.00161 * 179.97438 * 12 11 9 15 15 N 1.31013 * 120.00236 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99941 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47075 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47135 * 59.99822 * 16 14 12 19 19 H 1.48501 * 109.47073 * 299.99844 * 16 14 12 20 20 C 1.47077 * 118.23775 * 50.84816 * 6 5 3 21 21 C 1.53241 * 108.51884 * 309.08974 * 20 6 5 22 22 N 1.46898 * 109.33933 * 53.83592 * 21 20 6 23 23 C 1.46902 * 110.99687 * 172.74339 * 22 21 20 24 24 H 1.08997 * 109.47458 * 185.72307 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.72501 * 1 2 3 26 26 H 1.09003 * 109.46830 * 65.72727 * 1 2 3 27 27 H 1.09006 * 109.47348 * 239.99870 * 2 1 3 28 28 H 1.09002 * 109.47175 * 120.00078 * 2 1 3 29 29 H 1.08999 * 109.55802 * 66.53680 * 5 3 2 30 30 H 1.09007 * 109.45876 * 306.10759 * 5 3 2 31 31 H 0.97008 * 119.99626 * 359.97438 * 11 9 7 32 32 H 0.97005 * 119.99783 * 0.02562 * 15 14 12 33 33 H 1.08997 * 109.62982 * 68.80147 * 20 6 5 34 34 H 1.08999 * 109.62799 * 189.18740 * 20 6 5 35 35 H 1.09007 * 109.49140 * 173.78984 * 21 20 6 36 36 H 1.08996 * 109.49776 * 293.84121 * 21 20 6 37 37 H 1.09005 * 109.47224 * 67.38932 * 23 22 21 38 38 H 1.09005 * 109.46918 * 187.38313 * 23 22 21 39 39 H 1.08994 * 109.47318 * 307.38125 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6980 1.9492 0.9024 5 6 1.5014 2.1762 -1.2271 6 7 2.1219 3.5081 -1.2922 7 6 1.3678 4.6164 -1.4315 8 8 0.1565 4.5346 -1.4004 9 6 2.0195 5.9407 -1.6234 10 8 3.2235 6.0094 -1.7718 11 7 1.2742 7.0636 -1.6327 12 6 1.8702 8.2746 -1.8087 13 1 2.9404 8.3357 -1.9406 14 6 1.0982 9.4375 -1.8188 15 7 -0.2000 9.3634 -1.6583 16 14 1.9162 11.0995 -2.0597 17 1 0.8849 12.1676 -2.0303 18 1 2.6155 11.1218 -3.3695 19 1 2.8984 11.3304 -0.9701 20 6 3.5867 3.5989 -1.1951 21 6 4.0427 2.8097 0.0367 22 7 3.5086 1.4432 -0.0360 23 6 4.0618 0.6041 1.0354 24 1 -0.3634 -1.0225 0.1025 25 1 -0.3633 0.6001 0.8343 26 1 -0.3633 0.4225 -0.9369 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4195 2.2798 -1.1446 30 1 1.7505 1.6119 -2.1259 31 1 0.3129 7.0086 -1.5146 32 1 -0.6246 8.5005 -1.5321 33 1 4.0400 3.1741 -2.0907 34 1 3.8829 4.6431 -1.0949 35 1 5.1318 2.7736 0.0628 36 1 3.6732 3.2976 0.9386 37 1 3.6915 0.9542 1.9990 38 1 3.7544 -0.4304 0.8822 39 1 5.1499 0.6658 1.0201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110748875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:41 Heat of formation + Delta-G solvation = -50.497714 kcal Electronic energy + Delta-G solvation = -21414.327187 eV Core-core repulsion = 18164.581940 eV Total energy + Delta-G solvation = -3249.745247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.24559 -38.65903 -37.21072 -35.24328 -34.12319 -33.84102 -31.30627 -29.52017 -28.48102 -25.84812 -24.72737 -24.33268 -22.50373 -21.66096 -20.08567 -19.17005 -18.16943 -17.01671 -16.42768 -15.57620 -15.41439 -15.12476 -14.84481 -14.65298 -14.41788 -13.85374 -13.80016 -13.54992 -13.47630 -12.90669 -12.64406 -12.56960 -12.00485 -11.86649 -11.65038 -11.46841 -11.29766 -11.10669 -11.00776 -10.85862 -10.63285 -10.31672 -10.24699 -10.08806 -9.77215 -8.61543 -8.37176 -8.17897 -8.01480 -7.08498 -4.12316 2.30867 3.13828 3.25688 3.26568 3.44756 3.80701 4.09762 4.16146 4.59724 4.75138 4.78752 5.02826 5.09770 5.11791 5.26463 5.26797 5.31459 5.38115 5.55123 5.59344 5.62005 5.68132 5.73429 5.80218 5.83539 5.89252 6.07907 6.09009 6.24627 6.52066 6.80033 6.94742 7.04927 7.44286 7.68894 7.81846 8.15868 8.40346 8.63300 9.16227 9.60645 10.33059 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.004446 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.024003 B = 6296.945967 C = 6900.077757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.072 3.928 4 H 0.044 0.956 5 C 0.118 3.882 6 N -0.594 5.594 7 C 0.515 3.485 8 O -0.553 6.553 9 C 0.394 3.606 10 O -0.580 6.580 11 N -0.506 5.506 12 C -0.384 4.384 13 H 0.111 0.889 14 C 0.001 3.999 15 N -0.864 5.864 16 Si 1.096 2.904 17 H -0.276 1.276 18 H -0.279 1.279 19 H -0.279 1.279 20 C 0.074 3.926 21 C 0.041 3.959 22 N -0.540 5.540 23 C 0.023 3.977 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.388 0.612 32 H 0.271 0.729 33 H 0.065 0.935 34 H 0.159 0.841 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.023 0.977 38 H 0.070 0.930 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.737 -14.935 4.195 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.037 4.037 4 H 0.062 0.938 5 C -0.005 4.005 6 N -0.328 5.328 7 C 0.302 3.698 8 O -0.431 6.431 9 C 0.180 3.820 10 O -0.470 6.470 11 N -0.140 5.140 12 C -0.514 4.514 13 H 0.129 0.871 14 C -0.207 4.207 15 N -0.500 5.500 16 Si 0.920 3.080 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.205 1.205 20 C -0.048 4.048 21 C -0.087 4.087 22 N -0.265 5.265 23 C -0.125 4.125 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.223 0.777 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.176 0.824 35 H 0.104 0.896 36 H 0.053 0.947 37 H 0.041 0.959 38 H 0.089 0.911 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.682 -13.475 3.556 14.702 hybrid contribution -0.465 -1.696 1.011 2.028 sum 4.217 -15.171 4.567 16.395 Atomic orbital electron populations 1.21819 0.95259 1.01697 1.02513 1.21595 0.95960 0.95123 1.02684 1.21972 0.87598 0.96259 0.97871 0.93828 1.21680 0.99032 0.82534 0.97288 1.47866 1.08083 1.05116 1.71689 1.20572 0.86626 0.86127 0.76517 1.90661 1.14225 1.86962 1.51284 1.18815 0.87564 0.84227 0.91423 1.90233 1.13595 1.84686 1.58471 1.41620 1.09960 1.05723 1.56705 1.20786 0.97029 0.83330 1.50283 0.87125 1.26967 0.95117 1.04183 0.94424 1.70700 1.09769 1.28805 1.40699 0.83086 0.74974 0.72523 0.77416 1.20040 1.20432 1.20467 1.23126 0.78354 1.06779 0.96525 1.22617 1.00066 0.87659 0.98407 1.62048 1.06372 1.11789 1.46311 1.22410 1.00096 0.97992 0.92051 0.92493 0.92633 0.92079 0.90854 0.91641 0.88706 0.91125 0.77654 0.91674 0.91665 0.82434 0.89642 0.94694 0.95890 0.91132 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.35 37.15 0.35 -1.15 16 2 C -0.12 -1.17 4.95 -26.73 -0.13 -1.30 16 3 C 0.07 0.95 2.13 -67.82 -0.14 0.80 16 4 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 5 C 0.12 1.82 5.28 -3.84 -0.02 1.80 16 6 N -0.59 -11.08 3.02 -173.48 -0.52 -11.60 16 7 C 0.52 11.50 7.74 -11.88 -0.09 11.40 16 8 O -0.55 -13.07 15.94 5.42 0.09 -12.99 16 9 C 0.39 9.80 7.69 -11.88 -0.09 9.71 16 10 O -0.58 -14.86 12.69 5.36 0.07 -14.79 16 11 N -0.51 -13.25 5.24 -11.59 -0.06 -13.31 16 12 C -0.38 -10.42 9.67 -15.15 -0.15 -10.57 16 13 H 0.11 3.07 7.15 -52.48 -0.38 2.69 16 14 C 0.00 0.02 5.51 -17.40 -0.10 -0.07 16 15 N -0.86 -23.56 13.66 55.53 0.76 -22.81 16 16 Si 1.10 22.69 29.93 -169.99 -5.09 17.60 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 C 0.07 1.26 6.17 -3.60 -0.02 1.24 16 21 C 0.04 0.57 5.62 -3.70 -0.02 0.55 16 22 N -0.54 -6.92 4.73 -234.86 -1.11 -8.03 16 23 C 0.02 0.23 8.92 60.07 0.54 0.76 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.62 6.89 -51.93 -0.36 0.26 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.59 6.48 -51.93 -0.34 0.26 16 29 H 0.09 1.53 5.82 -51.93 -0.30 1.23 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.39 10.00 6.20 -40.82 -0.25 9.74 16 32 H 0.27 7.34 6.78 -40.82 -0.28 7.06 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.16 3.14 4.29 -55.07 -0.24 2.91 16 35 H 0.09 1.03 8.02 -51.93 -0.42 0.62 16 36 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.62 6.43 -51.93 -0.33 0.28 16 39 H 0.07 0.61 8.02 -51.93 -0.42 0.19 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -29.91 310.78 -6.55 -36.46 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -5.48 Total: 11.61 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 0.12 Total: 13.17 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.94 Total: -55.75 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: 0.15 Total: -27.78 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.09 Total: 17.60 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.91 -6.55 -36.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110748875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.038 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds