Wall clock time and date at job start Mon Mar 30 2020 05:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47403 * 2 1 4 4 H 1.08998 * 109.49109 * 61.42956 * 3 2 1 5 5 C 1.52781 * 109.58646 * 301.51360 * 3 2 1 6 6 N 1.47083 * 108.76700 * 186.35711 * 5 3 2 7 7 C 1.34775 * 120.87722 * 231.12327 * 6 5 3 8 8 O 1.21442 * 120.00399 * 5.73754 * 7 6 5 9 9 C 1.48834 * 119.99879 * 185.73621 * 7 6 5 10 10 O 1.21510 * 119.99866 * 6.43924 * 9 7 6 11 11 N 1.34773 * 120.00576 * 186.44266 * 9 7 6 12 12 C 1.36115 * 120.00616 * 180.02562 * 11 9 7 13 13 H 1.08003 * 119.99624 * 359.97438 * 12 11 9 14 14 C 1.39585 * 120.00161 * 179.97438 * 12 11 9 15 15 N 1.31013 * 120.00236 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99941 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47075 * 180.02562 * 16 14 12 18 18 H 1.48500 * 109.47135 * 59.99822 * 16 14 12 19 19 H 1.48501 * 109.47073 * 299.99844 * 16 14 12 20 20 C 1.47077 * 118.23775 * 50.84816 * 6 5 3 21 21 C 1.53241 * 108.51884 * 309.08974 * 20 6 5 22 22 N 1.46898 * 109.33933 * 53.83592 * 21 20 6 23 23 C 1.46902 * 110.99687 * 172.74339 * 22 21 20 24 24 H 1.08997 * 109.47458 * 185.72307 * 1 2 3 25 25 H 1.09001 * 109.47151 * 305.72501 * 1 2 3 26 26 H 1.09003 * 109.46830 * 65.72727 * 1 2 3 27 27 H 1.09006 * 109.47348 * 239.99870 * 2 1 3 28 28 H 1.09002 * 109.47175 * 120.00078 * 2 1 3 29 29 H 1.08999 * 109.55802 * 66.53680 * 5 3 2 30 30 H 1.09007 * 109.45876 * 306.10759 * 5 3 2 31 31 H 0.97008 * 119.99626 * 359.97438 * 11 9 7 32 32 H 0.97005 * 119.99783 * 0.02562 * 15 14 12 33 33 H 1.08997 * 109.62982 * 68.80147 * 20 6 5 34 34 H 1.08999 * 109.62799 * 189.18740 * 20 6 5 35 35 H 1.09007 * 109.49140 * 173.78984 * 21 20 6 36 36 H 1.08996 * 109.49776 * 293.84121 * 21 20 6 37 37 H 1.09005 * 109.47224 * 67.38932 * 23 22 21 38 38 H 1.09005 * 109.46918 * 187.38313 * 23 22 21 39 39 H 1.08994 * 109.47318 * 307.38125 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6980 1.9492 0.9024 5 6 1.5014 2.1762 -1.2271 6 7 2.1219 3.5081 -1.2922 7 6 1.3678 4.6164 -1.4315 8 8 0.1565 4.5346 -1.4004 9 6 2.0195 5.9407 -1.6234 10 8 3.2235 6.0094 -1.7718 11 7 1.2742 7.0636 -1.6327 12 6 1.8702 8.2746 -1.8087 13 1 2.9404 8.3357 -1.9406 14 6 1.0982 9.4375 -1.8188 15 7 -0.2000 9.3634 -1.6583 16 14 1.9162 11.0995 -2.0597 17 1 0.8849 12.1676 -2.0303 18 1 2.6155 11.1218 -3.3695 19 1 2.8984 11.3304 -0.9701 20 6 3.5867 3.5989 -1.1951 21 6 4.0427 2.8097 0.0367 22 7 3.5086 1.4432 -0.0360 23 6 4.0618 0.6041 1.0354 24 1 -0.3634 -1.0225 0.1025 25 1 -0.3633 0.6001 0.8343 26 1 -0.3633 0.4225 -0.9369 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4195 2.2798 -1.1446 30 1 1.7505 1.6119 -2.1259 31 1 0.3129 7.0086 -1.5146 32 1 -0.6246 8.5005 -1.5321 33 1 4.0400 3.1741 -2.0907 34 1 3.8829 4.6431 -1.0949 35 1 5.1318 2.7736 0.0628 36 1 3.6732 3.2976 0.9386 37 1 3.6915 0.9542 1.9990 38 1 3.7544 -0.4304 0.8822 39 1 5.1499 0.6658 1.0201 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110748875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:40 Heat of formation + Delta-G solvation = -72.663745 kcal Electronic energy + Delta-G solvation = -21415.288378 eV Core-core repulsion = 18164.581940 eV Total energy + Delta-G solvation = -3250.706438 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.87366 -40.15239 -39.01403 -37.04604 -35.72344 -34.87069 -33.32649 -30.65466 -29.74208 -27.62117 -26.03258 -25.56122 -24.06573 -22.88828 -21.47322 -20.71110 -20.12783 -18.76037 -18.05422 -16.98103 -16.83695 -16.62980 -16.41787 -16.17711 -15.56773 -15.46612 -15.18358 -15.13606 -14.69169 -14.24167 -13.95926 -13.66154 -13.52105 -13.08828 -12.90054 -12.84655 -12.68060 -12.52660 -12.16023 -12.04196 -11.99162 -11.88707 -11.77993 -11.63576 -11.55417 -10.39223 -9.97274 -9.89450 -9.37461 -9.17063 -6.24864 0.44083 1.49640 1.60207 1.62394 1.85661 2.25028 2.38345 2.75792 2.92376 3.07463 3.59286 3.72559 3.76786 3.98547 4.07745 4.18390 4.29668 4.34268 4.47143 4.54016 4.59880 4.69886 4.70783 4.79798 4.91796 4.99729 5.04640 5.11531 5.22196 5.30127 5.35503 5.38035 5.72328 5.89546 5.95675 6.08317 6.19611 6.43864 6.76833 7.13797 7.57335 8.26439 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033971 B = 0.004446 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.024003 B = 6296.945967 C = 6900.077757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C 0.076 3.924 4 H 0.026 0.974 5 C 0.114 3.886 6 N -0.584 5.584 7 C 0.514 3.486 8 O -0.572 6.572 9 C 0.395 3.605 10 O -0.588 6.588 11 N -0.522 5.522 12 C -0.414 4.414 13 H 0.099 0.901 14 C -0.031 4.031 15 N -0.885 5.885 16 Si 1.143 2.857 17 H -0.272 1.272 18 H -0.264 1.264 19 H -0.263 1.263 20 C 0.072 3.928 21 C 0.049 3.951 22 N -0.542 5.542 23 C 0.022 3.978 24 H 0.077 0.923 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.387 0.613 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.111 0.889 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.089 0.911 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -16.791 4.584 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.033 4.033 4 H 0.044 0.956 5 C -0.008 4.008 6 N -0.316 5.316 7 C 0.299 3.701 8 O -0.452 6.452 9 C 0.181 3.819 10 O -0.478 6.478 11 N -0.157 5.157 12 C -0.543 4.543 13 H 0.117 0.883 14 C -0.233 4.233 15 N -0.521 5.521 16 Si 0.959 3.041 17 H -0.197 1.197 18 H -0.189 1.189 19 H -0.188 1.188 20 C -0.049 4.049 21 C -0.079 4.079 22 N -0.267 5.267 23 C -0.125 4.125 24 H 0.095 0.905 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.222 0.778 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.148 0.852 35 H 0.129 0.871 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.108 0.892 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.992 -15.394 3.956 16.986 hybrid contribution -0.786 -1.323 0.902 1.783 sum 5.206 -16.716 4.858 18.170 Atomic orbital electron populations 1.21823 0.95083 1.02741 1.01641 1.21560 0.96007 0.92849 1.03969 1.21949 0.88044 0.97767 0.95532 0.95588 1.21955 0.98589 0.80846 0.99423 1.48015 1.08788 1.05402 1.69415 1.20131 0.86505 0.86179 0.77314 1.90650 1.14753 1.87156 1.52636 1.19437 0.87566 0.85124 0.89738 1.90263 1.14040 1.85507 1.58015 1.41716 1.09963 1.06076 1.57939 1.20880 0.96768 0.84348 1.52305 0.88300 1.28458 0.94846 1.07199 0.92825 1.70799 1.10567 1.28242 1.42450 0.82574 0.74585 0.68454 0.78474 1.19689 1.18900 1.18803 1.23038 0.77290 1.05838 0.98738 1.22503 1.01475 0.88114 0.95853 1.62064 1.05951 1.10964 1.47746 1.22515 1.00875 0.98219 0.90924 0.90454 0.93549 0.93017 0.89954 0.89830 0.89597 0.89566 0.77815 0.92746 0.90590 0.85233 0.87106 0.95998 0.95963 0.89239 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.35 71.98 0.67 -1.98 16 2 C -0.11 -1.81 4.95 30.59 0.15 -1.66 16 3 C 0.08 1.85 2.13 44.84 0.10 1.94 16 4 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 5 C 0.11 3.37 5.28 86.20 0.45 3.83 16 6 N -0.58 -21.60 3.02 -821.09 -2.48 -24.08 16 7 C 0.51 23.34 7.74 87.08 0.67 24.02 16 8 O -0.57 -27.62 15.94 -3.53 -0.06 -27.68 16 9 C 0.40 20.23 7.69 87.08 0.67 20.90 16 10 O -0.59 -30.83 12.69 -3.75 -0.05 -30.88 16 11 N -0.52 -28.35 5.24 -308.87 -1.62 -29.96 16 12 C -0.41 -23.08 9.67 84.35 0.82 -22.27 16 13 H 0.10 5.64 7.15 -2.91 -0.02 5.62 16 14 C -0.03 -1.63 5.51 85.14 0.47 -1.17 16 15 N -0.88 -49.27 13.66 21.76 0.30 -48.98 16 16 Si 1.14 45.45 29.93 68.60 2.05 47.50 16 17 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 18 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 C 0.07 2.41 6.17 86.35 0.53 2.94 16 21 C 0.05 1.29 5.62 86.38 0.49 1.77 16 22 N -0.54 -12.35 4.73 -896.97 -4.24 -16.60 16 23 C 0.02 0.36 8.92 127.69 1.14 1.50 16 24 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.05 0.98 6.89 -2.39 -0.02 0.96 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.08 1.18 6.48 -2.39 -0.02 1.16 16 29 H 0.09 2.74 5.82 -2.39 -0.01 2.72 16 30 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.39 20.86 6.20 -92.70 -0.57 20.29 16 32 H 0.26 14.67 6.78 -92.70 -0.63 14.04 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.13 5.20 4.29 -52.11 -0.22 4.97 16 35 H 0.11 2.36 8.02 -2.38 -0.02 2.34 16 36 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.09 1.17 6.43 -2.38 -0.02 1.15 16 39 H 0.08 1.14 8.02 -2.39 -0.02 1.12 16 Total: -1.00 -65.50 310.78 0.49 -65.02 By element: Atomic # 1 Polarization: 35.40 SS G_CDS: 0.42 Total: 35.82 kcal Atomic # 6 Polarization: 23.67 SS G_CDS: 6.16 Total: 29.83 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -8.04 Total: -119.62 kcal Atomic # 8 Polarization: -58.45 SS G_CDS: -0.10 Total: -58.55 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.05 Total: 47.50 kcal Total: -65.50 0.49 -65.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110748875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.646 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds